Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0535 and Echvi_0536 are separated by 234 nucleotides Echvi_0536 and Echvi_0537 are separated by 77 nucleotides Echvi_0537 and Echvi_0538 are separated by 116 nucleotides Echvi_0538 and Echvi_0539 overlap by 53 nucleotides
Echvi_0535: Echvi_0535 - NAD-dependent aldehyde dehydrogenases, at 597,007 to 598,551
_0535
Echvi_0536: Echvi_0536 - hypothetical protein, at 598,786 to 599,355
_0536
Echvi_0537: Echvi_0537 - hypothetical protein, at 599,433 to 600,113
_0537
Echvi_0538: Echvi_0538 - hypothetical protein, at 600,230 to 601,024
_0538
Echvi_0539: Echvi_0539 - Protein of unknown function (DUF3037)., at 600,972 to 601,379
_0539
Position (kb) 599
600
601 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 598.434 kb on - strand at 598.441 kb on - strand at 598.459 kb on - strand at 598.462 kb on + strand at 598.463 kb on - strand at 598.463 kb on - strand at 598.464 kb on + strand at 598.491 kb on + strand at 598.495 kb on + strand at 598.496 kb on - strand at 598.570 kb on - strand at 598.587 kb on - strand at 598.619 kb on - strand at 598.622 kb on + strand at 598.623 kb on - strand at 598.639 kb on + strand at 598.653 kb on + strand at 598.653 kb on + strand at 598.653 kb on + strand at 598.657 kb on + strand at 598.657 kb on + strand at 598.658 kb on - strand at 598.751 kb on + strand at 598.751 kb on + strand at 598.752 kb on - strand at 598.752 kb on - strand at 598.753 kb on + strand at 598.754 kb on - strand at 598.754 kb on - strand at 598.754 kb on - strand at 598.754 kb on - strand at 598.758 kb on + strand at 598.758 kb on + strand at 598.759 kb on - strand at 598.761 kb on - strand at 598.764 kb on + strand at 598.765 kb on - strand at 598.765 kb on - strand at 598.765 kb on - strand at 598.796 kb on - strand at 598.823 kb on + strand at 598.827 kb on + strand at 598.827 kb on + strand at 598.828 kb on - strand at 598.828 kb on - strand at 598.828 kb on - strand at 598.828 kb on - strand at 598.884 kb on + strand, within Echvi_0536 at 598.884 kb on + strand, within Echvi_0536 at 598.885 kb on - strand, within Echvi_0536 at 598.972 kb on - strand, within Echvi_0536 at 599.017 kb on - strand, within Echvi_0536 at 599.151 kb on + strand, within Echvi_0536 at 599.151 kb on + strand, within Echvi_0536 at 599.160 kb on + strand, within Echvi_0536 at 599.160 kb on + strand, within Echvi_0536 at 599.161 kb on - strand, within Echvi_0536 at 599.195 kb on + strand, within Echvi_0536 at 599.196 kb on - strand, within Echvi_0536 at 599.202 kb on + strand, within Echvi_0536 at 599.202 kb on + strand, within Echvi_0536 at 599.202 kb on + strand, within Echvi_0536 at 599.206 kb on + strand, within Echvi_0536 at 599.312 kb on + strand at 599.442 kb on + strand at 599.442 kb on + strand at 599.443 kb on - strand at 599.450 kb on - strand at 599.452 kb on + strand at 599.452 kb on + strand at 599.452 kb on + strand at 599.452 kb on + strand at 599.453 kb on - strand at 599.453 kb on - strand at 599.526 kb on + strand, within Echvi_0537 at 599.548 kb on - strand, within Echvi_0537 at 599.548 kb on - strand, within Echvi_0537 at 599.549 kb on + strand, within Echvi_0537 at 599.549 kb on + strand, within Echvi_0537 at 599.550 kb on - strand, within Echvi_0537 at 599.555 kb on + strand, within Echvi_0537 at 599.556 kb on - strand, within Echvi_0537 at 599.606 kb on + strand, within Echvi_0537 at 599.631 kb on + strand at 599.631 kb on + strand, within Echvi_0537 at 599.631 kb on + strand, within Echvi_0537 at 599.632 kb on - strand, within Echvi_0537 at 599.698 kb on + strand, within Echvi_0537 at 599.698 kb on + strand, within Echvi_0537 at 599.699 kb on - strand, within Echvi_0537 at 599.699 kb on - strand, within Echvi_0537 at 599.699 kb on - strand, within Echvi_0537 at 599.727 kb on + strand, within Echvi_0537 at 599.728 kb on - strand, within Echvi_0537 at 599.739 kb on + strand, within Echvi_0537 at 599.739 kb on + strand, within Echvi_0537 at 599.739 kb on + strand, within Echvi_0537 at 599.740 kb on - strand, within Echvi_0537 at 599.740 kb on - strand, within Echvi_0537 at 599.740 kb on - strand, within Echvi_0537 at 599.751 kb on - strand, within Echvi_0537 at 599.751 kb on - strand, within Echvi_0537 at 599.751 kb on - strand, within Echvi_0537 at 599.787 kb on + strand, within Echvi_0537 at 599.788 kb on - strand, within Echvi_0537 at 599.889 kb on - strand, within Echvi_0537 at 599.889 kb on - strand, within Echvi_0537 at 599.892 kb on + strand, within Echvi_0537 at 599.892 kb on + strand, within Echvi_0537 at 599.958 kb on - strand, within Echvi_0537 at 599.978 kb on - strand, within Echvi_0537 at 599.978 kb on - strand, within Echvi_0537 at 599.978 kb on - strand, within Echvi_0537 at 599.985 kb on - strand, within Echvi_0537 at 599.987 kb on + strand, within Echvi_0537 at 600.032 kb on + strand, within Echvi_0537 at 600.032 kb on + strand, within Echvi_0537 at 600.032 kb on + strand, within Echvi_0537 at 600.032 kb on + strand, within Echvi_0537 at 600.033 kb on - strand, within Echvi_0537 at 600.033 kb on - strand, within Echvi_0537 at 600.033 kb on - strand, within Echvi_0537 at 600.075 kb on - strand at 600.135 kb on - strand at 600.135 kb on - strand at 600.135 kb on - strand at 600.135 kb on - strand at 600.136 kb on + strand at 600.136 kb on + strand at 600.136 kb on + strand at 600.136 kb on + strand at 600.137 kb on - strand at 600.137 kb on - strand at 600.137 kb on - strand at 600.156 kb on - strand at 600.156 kb on - strand at 600.164 kb on - strand at 600.164 kb on - strand at 600.180 kb on + strand at 600.181 kb on - strand at 600.183 kb on - strand at 600.183 kb on - strand at 600.183 kb on - strand at 600.183 kb on - strand at 600.191 kb on + strand at 600.221 kb on - strand at 600.227 kb on + strand at 600.334 kb on + strand at 600.335 kb on - strand, within Echvi_0538 at 600.335 kb on - strand, within Echvi_0538 at 600.339 kb on - strand, within Echvi_0538 at 600.339 kb on - strand, within Echvi_0538 at 600.339 kb on - strand, within Echvi_0538 at 600.445 kb on - strand, within Echvi_0538 at 600.507 kb on + strand, within Echvi_0538 at 600.508 kb on - strand, within Echvi_0538 at 600.585 kb on + strand, within Echvi_0538 at 600.586 kb on - strand, within Echvi_0538 at 600.586 kb on - strand, within Echvi_0538 at 600.586 kb on - strand, within Echvi_0538 at 600.586 kb on - strand, within Echvi_0538 at 600.586 kb on - strand, within Echvi_0538 at 600.664 kb on + strand, within Echvi_0538 at 600.942 kb on - strand, within Echvi_0538 at 600.942 kb on - strand, within Echvi_0538 at 600.960 kb on + strand at 600.960 kb on + strand at 601.019 kb on - strand at 601.020 kb on + strand at 601.020 kb on + strand at 601.021 kb on - strand at 601.027 kb on - strand, within Echvi_0539 at 601.079 kb on - strand, within Echvi_0539 at 601.079 kb on - strand, within Echvi_0539
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 598,434 - +0.4 598,441 - +0.0 598,459 - +0.6 598,462 + -1.2 598,463 - +0.1 598,463 - +0.7 598,464 + -0.2 598,491 + +1.9 598,495 + -0.4 598,496 - +0.6 598,570 - -0.5 598,587 - +1.1 598,619 - +0.9 598,622 + -1.9 598,623 - +0.6 598,639 + -0.4 598,653 + +1.1 598,653 + -0.9 598,653 + +0.2 598,657 + -0.2 598,657 + +1.5 598,658 - -0.1 598,751 + +0.3 598,751 + -0.0 598,752 - -0.3 598,752 - +0.2 598,753 + -0.1 598,754 - -0.9 598,754 - +0.2 598,754 - +0.2 598,754 - +3.1 598,758 + -0.4 598,758 + -0.2 598,759 - -0.2 598,761 - -0.2 598,764 + +0.8 598,765 - +0.5 598,765 - -0.2 598,765 - +0.8 598,796 - +0.3 598,823 + +0.6 598,827 + -0.8 598,827 + -0.5 598,828 - +2.1 598,828 - -0.6 598,828 - +1.0 598,828 - +1.4 598,884 + Echvi_0536 0.17 -0.0 598,884 + Echvi_0536 0.17 +0.9 598,885 - Echvi_0536 0.17 -0.1 598,972 - Echvi_0536 0.33 -2.4 599,017 - Echvi_0536 0.41 +1.6 599,151 + Echvi_0536 0.64 +0.1 599,151 + Echvi_0536 0.64 +0.1 599,160 + Echvi_0536 0.66 +0.8 599,160 + Echvi_0536 0.66 +1.9 599,161 - Echvi_0536 0.66 +1.9 599,195 + Echvi_0536 0.72 -0.2 599,196 - Echvi_0536 0.72 +0.3 599,202 + Echvi_0536 0.73 +0.5 599,202 + Echvi_0536 0.73 -1.3 599,202 + Echvi_0536 0.73 -1.0 599,206 + Echvi_0536 0.74 -0.6 599,312 + -1.1 599,442 + +0.5 599,442 + -0.1 599,443 - +1.6 599,450 - +0.6 599,452 + -0.5 599,452 + -0.3 599,452 + -0.4 599,452 + -0.8 599,453 - +0.7 599,453 - -0.3 599,526 + Echvi_0537 0.14 -0.9 599,548 - Echvi_0537 0.17 +1.2 599,548 - Echvi_0537 0.17 +1.1 599,549 + Echvi_0537 0.17 -1.2 599,549 + Echvi_0537 0.17 +1.5 599,550 - Echvi_0537 0.17 +0.7 599,555 + Echvi_0537 0.18 -0.2 599,556 - Echvi_0537 0.18 +0.8 599,606 + Echvi_0537 0.25 +0.9 599,631 + +2.1 599,631 + Echvi_0537 0.29 +0.6 599,631 + Echvi_0537 0.29 +0.5 599,632 - Echvi_0537 0.29 +0.0 599,698 + Echvi_0537 0.39 -0.6 599,698 + Echvi_0537 0.39 -0.4 599,699 - Echvi_0537 0.39 +1.4 599,699 - Echvi_0537 0.39 -0.2 599,699 - Echvi_0537 0.39 -1.7 599,727 + Echvi_0537 0.43 +1.4 599,728 - Echvi_0537 0.43 +0.4 599,739 + Echvi_0537 0.45 -0.6 599,739 + Echvi_0537 0.45 -0.0 599,739 + Echvi_0537 0.45 +0.3 599,740 - Echvi_0537 0.45 +0.4 599,740 - Echvi_0537 0.45 -0.4 599,740 - Echvi_0537 0.45 -0.5 599,751 - Echvi_0537 0.47 -0.5 599,751 - Echvi_0537 0.47 +0.8 599,751 - Echvi_0537 0.47 -0.8 599,787 + Echvi_0537 0.52 -3.6 599,788 - Echvi_0537 0.52 -0.4 599,889 - Echvi_0537 0.67 -0.8 599,889 - Echvi_0537 0.67 -0.0 599,892 + Echvi_0537 0.67 -0.5 599,892 + Echvi_0537 0.67 -1.0 599,958 - Echvi_0537 0.77 +0.5 599,978 - Echvi_0537 0.80 +1.0 599,978 - Echvi_0537 0.80 -0.8 599,978 - Echvi_0537 0.80 +0.5 599,985 - Echvi_0537 0.81 +0.0 599,987 + Echvi_0537 0.81 +1.4 600,032 + Echvi_0537 0.88 +1.1 600,032 + Echvi_0537 0.88 +1.1 600,032 + Echvi_0537 0.88 +0.3 600,032 + Echvi_0537 0.88 -1.0 600,033 - Echvi_0537 0.88 -0.2 600,033 - Echvi_0537 0.88 +0.8 600,033 - Echvi_0537 0.88 -0.7 600,075 - +0.0 600,135 - -0.1 600,135 - +0.6 600,135 - +1.0 600,135 - -0.9 600,136 + -1.4 600,136 + +0.7 600,136 + +0.5 600,136 + +0.1 600,137 - -1.2 600,137 - -0.4 600,137 - -0.5 600,156 - +0.1 600,156 - +1.3 600,164 - -1.8 600,164 - +0.3 600,180 + +1.3 600,181 - -1.2 600,183 - +0.8 600,183 - +1.7 600,183 - +1.1 600,183 - -0.3 600,191 + +2.9 600,221 - +0.7 600,227 + -1.1 600,334 + +2.1 600,335 - Echvi_0538 0.13 -0.4 600,335 - Echvi_0538 0.13 +0.2 600,339 - Echvi_0538 0.14 +0.5 600,339 - Echvi_0538 0.14 -0.4 600,339 - Echvi_0538 0.14 +0.2 600,445 - Echvi_0538 0.27 +1.3 600,507 + Echvi_0538 0.35 -1.5 600,508 - Echvi_0538 0.35 +0.1 600,585 + Echvi_0538 0.45 -0.4 600,586 - Echvi_0538 0.45 +1.9 600,586 - Echvi_0538 0.45 +0.5 600,586 - Echvi_0538 0.45 -0.2 600,586 - Echvi_0538 0.45 -0.3 600,586 - Echvi_0538 0.45 -0.7 600,664 + Echvi_0538 0.55 +1.1 600,942 - Echvi_0538 0.90 +1.1 600,942 - Echvi_0538 0.90 -0.2 600,960 + +1.4 600,960 + -0.2 601,019 - -1.1 601,020 + +1.3 601,020 + +0.5 601,021 - +1.1 601,027 - Echvi_0539 0.13 -0.1 601,079 - Echvi_0539 0.26 +1.1 601,079 - Echvi_0539 0.26 -0.2
Or see this region's nucleotide sequence