Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0502

Experiment: m.b. Carbenicillin 0.2 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_0500 and Echvi_0501 are separated by 72 nucleotidesEchvi_0501 and Echvi_0502 are separated by 318 nucleotidesEchvi_0502 and Echvi_0503 are separated by 87 nucleotides Echvi_0500: Echvi_0500 - Beta-xylosidase, at 557,142 to 558,122 _0500 Echvi_0501: Echvi_0501 - ADP-ribose pyrophosphatase, at 558,195 to 558,647 _0501 Echvi_0502: Echvi_0502 - Galactose mutarotase and related enzymes, at 558,966 to 560,126 _0502 Echvi_0503: Echvi_0503 - L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) (from data), at 560,214 to 560,918 _0503 Position (kb) 558 559 560 561Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 557.979 kb on + strand, within Echvi_0500at 557.979 kb on + strand, within Echvi_0500at 557.980 kb on - strand, within Echvi_0500at 557.999 kb on + strand, within Echvi_0500at 558.000 kb on - strand, within Echvi_0500at 558.000 kb on - strand, within Echvi_0500at 558.054 kb on + strandat 558.057 kb on + strandat 558.058 kb on - strandat 558.072 kb on - strandat 558.104 kb on + strandat 558.120 kb on + strandat 558.131 kb on - strandat 558.209 kb on - strandat 558.214 kb on + strandat 558.214 kb on + strandat 558.214 kb on + strandat 558.293 kb on - strand, within Echvi_0501at 558.359 kb on - strand, within Echvi_0501at 558.454 kb on - strand, within Echvi_0501at 558.461 kb on - strand, within Echvi_0501at 558.551 kb on - strand, within Echvi_0501at 558.551 kb on - strand, within Echvi_0501at 558.585 kb on + strand, within Echvi_0501at 558.585 kb on + strand, within Echvi_0501at 558.586 kb on - strand, within Echvi_0501at 558.586 kb on - strand, within Echvi_0501at 558.618 kb on + strandat 558.663 kb on - strandat 558.913 kb on + strandat 558.914 kb on - strandat 558.914 kb on - strandat 558.922 kb on + strandat 558.923 kb on - strandat 558.961 kb on + strandat 558.962 kb on - strandat 558.985 kb on + strandat 558.985 kb on + strandat 559.003 kb on + strandat 559.003 kb on + strandat 559.003 kb on + strandat 559.003 kb on + strandat 559.004 kb on - strandat 559.090 kb on + strand, within Echvi_0502at 559.090 kb on + strand, within Echvi_0502at 559.093 kb on + strand, within Echvi_0502at 559.093 kb on + strand, within Echvi_0502at 559.094 kb on - strand, within Echvi_0502at 559.102 kb on + strand, within Echvi_0502at 559.102 kb on + strand, within Echvi_0502at 559.102 kb on + strand, within Echvi_0502at 559.103 kb on - strand, within Echvi_0502at 559.122 kb on - strand, within Echvi_0502at 559.127 kb on + strand, within Echvi_0502at 559.212 kb on + strand, within Echvi_0502at 559.261 kb on + strand, within Echvi_0502at 559.261 kb on + strand, within Echvi_0502at 559.265 kb on + strand, within Echvi_0502at 559.266 kb on - strand, within Echvi_0502at 559.266 kb on - strand, within Echvi_0502at 559.266 kb on - strand, within Echvi_0502at 559.266 kb on - strand, within Echvi_0502at 559.284 kb on + strand, within Echvi_0502at 559.337 kb on + strand, within Echvi_0502at 559.365 kb on - strand, within Echvi_0502at 559.393 kb on + strand, within Echvi_0502at 559.393 kb on + strand, within Echvi_0502at 559.394 kb on - strand, within Echvi_0502at 559.394 kb on - strand, within Echvi_0502at 559.394 kb on - strand, within Echvi_0502at 559.431 kb on - strand, within Echvi_0502at 559.454 kb on + strand, within Echvi_0502at 559.459 kb on + strand, within Echvi_0502at 559.479 kb on + strand, within Echvi_0502at 559.598 kb on + strand, within Echvi_0502at 559.598 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.607 kb on + strand, within Echvi_0502at 559.721 kb on + strand, within Echvi_0502at 559.721 kb on + strand, within Echvi_0502at 559.722 kb on - strand, within Echvi_0502at 559.722 kb on - strand, within Echvi_0502at 559.723 kb on + strand, within Echvi_0502at 559.759 kb on - strand, within Echvi_0502at 559.779 kb on + strand, within Echvi_0502at 559.779 kb on + strand, within Echvi_0502at 559.779 kb on + strand, within Echvi_0502at 559.813 kb on + strand, within Echvi_0502at 559.814 kb on - strand, within Echvi_0502at 559.814 kb on - strand, within Echvi_0502at 559.891 kb on - strand, within Echvi_0502at 559.900 kb on + strand, within Echvi_0502at 559.900 kb on + strand, within Echvi_0502at 559.900 kb on + strand, within Echvi_0502at 559.900 kb on + strand, within Echvi_0502at 559.910 kb on + strand, within Echvi_0502at 559.911 kb on - strand, within Echvi_0502at 559.943 kb on + strand, within Echvi_0502at 559.944 kb on - strand, within Echvi_0502at 559.945 kb on + strand, within Echvi_0502at 559.946 kb on - strand, within Echvi_0502at 559.946 kb on - strand, within Echvi_0502at 559.946 kb on - strand, within Echvi_0502at 559.968 kb on + strand, within Echvi_0502at 559.968 kb on + strand, within Echvi_0502at 559.968 kb on + strand, within Echvi_0502at 559.992 kb on - strand, within Echvi_0502at 560.057 kb on + strandat 560.058 kb on - strandat 560.066 kb on - strandat 560.102 kb on + strandat 560.116 kb on - strandat 560.118 kb on + strandat 560.119 kb on - strandat 560.133 kb on + strandat 560.137 kb on + strandat 560.138 kb on - strandat 560.152 kb on + strandat 560.152 kb on + strandat 560.152 kb on + strandat 560.152 kb on + strandat 560.152 kb on + strandat 560.172 kb on + strandat 560.176 kb on + strandat 560.176 kb on + strandat 560.176 kb on + strandat 560.208 kb on + strandat 560.230 kb on + strandat 560.234 kb on - strandat 560.234 kb on - strandat 560.318 kb on + strand, within Echvi_0503at 560.323 kb on + strand, within Echvi_0503at 560.324 kb on - strand, within Echvi_0503at 560.337 kb on + strand, within Echvi_0503at 560.357 kb on + strand, within Echvi_0503at 560.360 kb on + strand, within Echvi_0503at 560.362 kb on + strand, within Echvi_0503at 560.362 kb on + strand, within Echvi_0503at 560.362 kb on + strand, within Echvi_0503at 560.362 kb on + strand, within Echvi_0503at 560.363 kb on - strand, within Echvi_0503at 560.427 kb on + strand, within Echvi_0503at 560.428 kb on - strand, within Echvi_0503at 560.438 kb on - strand, within Echvi_0503at 560.771 kb on - strand, within Echvi_0503at 560.873 kb on + strandat 560.885 kb on - strandat 560.899 kb on - strandat 560.899 kb on - strandat 560.928 kb on - strandat 560.956 kb on - strandat 560.958 kb on - strandat 560.960 kb on - strandat 560.974 kb on - strandat 561.042 kb on + strandat 561.042 kb on + strandat 561.082 kb on - strandat 561.112 kb on - strandat 561.125 kb on + strandat 561.126 kb on - strandat 561.126 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
remove
557,979 + Echvi_0500 0.85 -0.9
557,979 + Echvi_0500 0.85 -0.6
557,980 - Echvi_0500 0.85 +0.7
557,999 + Echvi_0500 0.87 +0.7
558,000 - Echvi_0500 0.87 +0.4
558,000 - Echvi_0500 0.87 +2.2
558,054 + +1.8
558,057 + -0.1
558,058 - -1.3
558,072 - +0.3
558,104 + +0.4
558,120 + -0.1
558,131 - -0.6
558,209 - +0.1
558,214 + -1.5
558,214 + -0.5
558,214 + -1.1
558,293 - Echvi_0501 0.22 -0.3
558,359 - Echvi_0501 0.36 -0.8
558,454 - Echvi_0501 0.57 +0.7
558,461 - Echvi_0501 0.59 -0.5
558,551 - Echvi_0501 0.79 -1.4
558,551 - Echvi_0501 0.79 -0.7
558,585 + Echvi_0501 0.86 +0.9
558,585 + Echvi_0501 0.86 +1.1
558,586 - Echvi_0501 0.86 -0.9
558,586 - Echvi_0501 0.86 +1.1
558,618 + +0.7
558,663 - -1.5
558,913 + -2.8
558,914 - -0.3
558,914 - +0.1
558,922 + +0.2
558,923 - +0.7
558,961 + -0.2
558,962 - +0.9
558,985 + -0.5
558,985 + +0.1
559,003 + +0.5
559,003 + -0.4
559,003 + +0.3
559,003 + -1.1
559,004 - -0.6
559,090 + Echvi_0502 0.11 +0.1
559,090 + Echvi_0502 0.11 +0.7
559,093 + Echvi_0502 0.11 +0.5
559,093 + Echvi_0502 0.11 +0.8
559,094 - Echvi_0502 0.11 +0.6
559,102 + Echvi_0502 0.12 -0.9
559,102 + Echvi_0502 0.12 -0.6
559,102 + Echvi_0502 0.12 -0.0
559,103 - Echvi_0502 0.12 +1.9
559,122 - Echvi_0502 0.13 +1.0
559,127 + Echvi_0502 0.14 -0.9
559,212 + Echvi_0502 0.21 +0.2
559,261 + Echvi_0502 0.25 +0.5
559,261 + Echvi_0502 0.25 -0.4
559,265 + Echvi_0502 0.26 -1.8
559,266 - Echvi_0502 0.26 +0.3
559,266 - Echvi_0502 0.26 +0.4
559,266 - Echvi_0502 0.26 +1.8
559,266 - Echvi_0502 0.26 +0.2
559,284 + Echvi_0502 0.27 +1.7
559,337 + Echvi_0502 0.32 +1.0
559,365 - Echvi_0502 0.34 +1.2
559,393 + Echvi_0502 0.37 +0.4
559,393 + Echvi_0502 0.37 -1.9
559,394 - Echvi_0502 0.37 +0.6
559,394 - Echvi_0502 0.37 +2.1
559,394 - Echvi_0502 0.37 +1.6
559,431 - Echvi_0502 0.40 +1.2
559,454 + Echvi_0502 0.42 +0.2
559,459 + Echvi_0502 0.42 +1.2
559,479 + Echvi_0502 0.44 -0.3
559,598 + Echvi_0502 0.54 +0.5
559,598 + Echvi_0502 0.54 +2.3
559,603 + Echvi_0502 0.55 -0.2
559,603 + Echvi_0502 0.55 -0.0
559,603 + Echvi_0502 0.55 +0.7
559,603 + Echvi_0502 0.55 +0.4
559,603 + Echvi_0502 0.55 -0.6
559,603 + Echvi_0502 0.55 +1.6
559,603 + Echvi_0502 0.55 +0.4
559,603 + Echvi_0502 0.55 -0.4
559,603 + Echvi_0502 0.55 -0.9
559,604 - Echvi_0502 0.55 +0.3
559,604 - Echvi_0502 0.55 +0.3
559,604 - Echvi_0502 0.55 -0.1
559,604 - Echvi_0502 0.55 +0.5
559,604 - Echvi_0502 0.55 +0.7
559,604 - Echvi_0502 0.55 -2.6
559,604 - Echvi_0502 0.55 +0.7
559,604 - Echvi_0502 0.55 -1.9
559,604 - Echvi_0502 0.55 +0.5
559,607 + Echvi_0502 0.55 -1.2
559,721 + Echvi_0502 0.65 -0.3
559,721 + Echvi_0502 0.65 +0.1
559,722 - Echvi_0502 0.65 +1.2
559,722 - Echvi_0502 0.65 +0.3
559,723 + Echvi_0502 0.65 +0.6
559,759 - Echvi_0502 0.68 +1.7
559,779 + Echvi_0502 0.70 +0.1
559,779 + Echvi_0502 0.70 -1.5
559,779 + Echvi_0502 0.70 -0.2
559,813 + Echvi_0502 0.73 +0.3
559,814 - Echvi_0502 0.73 -0.9
559,814 - Echvi_0502 0.73 -0.1
559,891 - Echvi_0502 0.80 +0.2
559,900 + Echvi_0502 0.80 -0.4
559,900 + Echvi_0502 0.80 +0.7
559,900 + Echvi_0502 0.80 -0.2
559,900 + Echvi_0502 0.80 +1.7
559,910 + Echvi_0502 0.81 -0.7
559,911 - Echvi_0502 0.81 -1.9
559,943 + Echvi_0502 0.84 +0.6
559,944 - Echvi_0502 0.84 -0.3
559,945 + Echvi_0502 0.84 +0.5
559,946 - Echvi_0502 0.84 -0.2
559,946 - Echvi_0502 0.84 +0.5
559,946 - Echvi_0502 0.84 +0.9
559,968 + Echvi_0502 0.86 -1.0
559,968 + Echvi_0502 0.86 -3.6
559,968 + Echvi_0502 0.86 +0.5
559,992 - Echvi_0502 0.88 +0.6
560,057 + +0.2
560,058 - -0.4
560,066 - -0.0
560,102 + -2.3
560,116 - -1.6
560,118 + -0.3
560,119 - +0.9
560,133 + -1.1
560,137 + -0.3
560,138 - -0.3
560,152 + -1.1
560,152 + +1.1
560,152 + -2.8
560,152 + -2.5
560,152 + +0.5
560,172 + -1.2
560,176 + +0.2
560,176 + +0.8
560,176 + -1.4
560,208 + +1.1
560,230 + +0.1
560,234 - -0.3
560,234 - +0.1
560,318 + Echvi_0503 0.15 -0.9
560,323 + Echvi_0503 0.15 -1.5
560,324 - Echvi_0503 0.16 -1.9
560,337 + Echvi_0503 0.17 +0.1
560,357 + Echvi_0503 0.20 +0.1
560,360 + Echvi_0503 0.21 +0.5
560,362 + Echvi_0503 0.21 +0.4
560,362 + Echvi_0503 0.21 -0.5
560,362 + Echvi_0503 0.21 -0.3
560,362 + Echvi_0503 0.21 -1.3
560,363 - Echvi_0503 0.21 -1.4
560,427 + Echvi_0503 0.30 -0.4
560,428 - Echvi_0503 0.30 -1.0
560,438 - Echvi_0503 0.32 +0.1
560,771 - Echvi_0503 0.79 +0.0
560,873 + +0.6
560,885 - -0.5
560,899 - -0.3
560,899 - -0.9
560,928 - -0.3
560,956 - -1.3
560,958 - -0.6
560,960 - -2.1
560,974 - -2.6
561,042 + -1.9
561,042 + -0.2
561,082 - -1.3
561,112 - -0.3
561,125 + +1.6
561,126 - -1.4
561,126 - -2.3

Or see this region's nucleotide sequence