Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0491

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0490 and Echvi_0491 are separated by 103 nucleotidesEchvi_0491 and Echvi_0492 are separated by 116 nucleotides Echvi_0490: Echvi_0490 - Beta-glucanase/Beta-glucan synthetase, at 543,251 to 544,132 _0490 Echvi_0491: Echvi_0491 - Domain of Unknown Function (DUF1080)., at 544,236 to 545,045 _0491 Echvi_0492: Echvi_0492 - SusD family., at 545,162 to 546,847 _0492 Position (kb) 544 545 546Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 543.265 kb on - strandat 543.266 kb on + strandat 543.266 kb on + strandat 543.266 kb on + strandat 543.267 kb on - strandat 543.273 kb on - strandat 543.277 kb on - strandat 543.288 kb on + strandat 543.288 kb on + strandat 543.288 kb on + strandat 543.307 kb on + strandat 543.307 kb on + strandat 543.355 kb on + strand, within Echvi_0490at 543.355 kb on + strand, within Echvi_0490at 543.479 kb on + strand, within Echvi_0490at 543.637 kb on + strand, within Echvi_0490at 543.637 kb on + strand, within Echvi_0490at 543.638 kb on - strand, within Echvi_0490at 543.641 kb on + strand, within Echvi_0490at 543.642 kb on - strand, within Echvi_0490at 543.642 kb on - strand, within Echvi_0490at 543.716 kb on + strand, within Echvi_0490at 543.716 kb on + strand, within Echvi_0490at 543.716 kb on + strand, within Echvi_0490at 543.716 kb on + strand, within Echvi_0490at 543.789 kb on + strand, within Echvi_0490at 543.789 kb on + strand, within Echvi_0490at 543.916 kb on - strand, within Echvi_0490at 543.916 kb on - strand, within Echvi_0490at 543.918 kb on + strand, within Echvi_0490at 543.919 kb on - strand, within Echvi_0490at 544.015 kb on + strand, within Echvi_0490at 544.015 kb on + strand, within Echvi_0490at 544.016 kb on - strand, within Echvi_0490at 544.031 kb on - strand, within Echvi_0490at 544.050 kb on - strandat 544.050 kb on - strandat 544.118 kb on + strandat 544.118 kb on + strandat 544.118 kb on + strandat 544.118 kb on + strandat 544.119 kb on - strandat 544.119 kb on - strandat 544.120 kb on + strandat 544.120 kb on + strandat 544.121 kb on - strandat 544.121 kb on - strandat 544.159 kb on - strandat 544.184 kb on - strandat 544.207 kb on - strandat 544.223 kb on + strandat 544.265 kb on + strandat 544.265 kb on + strandat 544.309 kb on + strandat 544.309 kb on + strandat 544.310 kb on - strandat 544.391 kb on + strand, within Echvi_0491at 544.483 kb on + strand, within Echvi_0491at 544.484 kb on - strand, within Echvi_0491at 544.505 kb on + strand, within Echvi_0491at 544.562 kb on + strand, within Echvi_0491at 544.644 kb on + strand, within Echvi_0491at 544.685 kb on + strand, within Echvi_0491at 544.691 kb on + strand, within Echvi_0491at 544.691 kb on + strand, within Echvi_0491at 544.692 kb on - strand, within Echvi_0491at 544.693 kb on + strand, within Echvi_0491at 544.693 kb on + strand, within Echvi_0491at 544.693 kb on + strand, within Echvi_0491at 544.697 kb on + strand, within Echvi_0491at 544.697 kb on + strand, within Echvi_0491at 544.697 kb on + strand, within Echvi_0491at 544.698 kb on - strand, within Echvi_0491at 544.699 kb on + strand, within Echvi_0491at 544.699 kb on + strand, within Echvi_0491at 544.816 kb on + strand, within Echvi_0491at 544.825 kb on + strand, within Echvi_0491at 544.826 kb on - strand, within Echvi_0491at 544.826 kb on - strand, within Echvi_0491at 545.077 kb on - strandat 545.147 kb on + strandat 545.248 kb on + strandat 545.248 kb on + strandat 545.395 kb on + strand, within Echvi_0492at 545.520 kb on + strand, within Echvi_0492at 545.589 kb on + strand, within Echvi_0492at 545.589 kb on + strand, within Echvi_0492at 545.589 kb on + strand, within Echvi_0492at 545.590 kb on - strand, within Echvi_0492at 545.610 kb on + strand, within Echvi_0492at 545.610 kb on + strand, within Echvi_0492at 545.610 kb on + strand, within Echvi_0492at 545.619 kb on + strand, within Echvi_0492at 545.619 kb on + strand, within Echvi_0492at 545.620 kb on - strand, within Echvi_0492at 545.625 kb on + strand, within Echvi_0492at 545.625 kb on + strand, within Echvi_0492at 545.625 kb on + strand, within Echvi_0492at 545.626 kb on - strand, within Echvi_0492at 545.626 kb on - strand, within Echvi_0492at 545.628 kb on - strand, within Echvi_0492at 545.724 kb on + strand, within Echvi_0492at 545.724 kb on + strand, within Echvi_0492at 545.724 kb on + strand, within Echvi_0492at 545.725 kb on - strand, within Echvi_0492at 545.725 kb on - strand, within Echvi_0492at 545.755 kb on + strand, within Echvi_0492at 545.799 kb on + strand, within Echvi_0492at 545.800 kb on - strand, within Echvi_0492at 545.821 kb on + strand, within Echvi_0492at 545.825 kb on - strand, within Echvi_0492

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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543,265 - -1.7
543,266 + +0.5
543,266 + +1.8
543,266 + -1.1
543,267 - +0.2
543,273 - -0.7
543,277 - +2.1
543,288 + -0.0
543,288 + -0.5
543,288 + -0.1
543,307 + +0.5
543,307 + -0.1
543,355 + Echvi_0490 0.12 -0.5
543,355 + Echvi_0490 0.12 -0.1
543,479 + Echvi_0490 0.26 -1.6
543,637 + Echvi_0490 0.44 -1.3
543,637 + Echvi_0490 0.44 +0.5
543,638 - Echvi_0490 0.44 -0.9
543,641 + Echvi_0490 0.44 +0.2
543,642 - Echvi_0490 0.44 -1.8
543,642 - Echvi_0490 0.44 +0.5
543,716 + Echvi_0490 0.53 -0.9
543,716 + Echvi_0490 0.53 -0.2
543,716 + Echvi_0490 0.53 +0.2
543,716 + Echvi_0490 0.53 -1.9
543,789 + Echvi_0490 0.61 +0.2
543,789 + Echvi_0490 0.61 +0.1
543,916 - Echvi_0490 0.75 +1.1
543,916 - Echvi_0490 0.75 +0.5
543,918 + Echvi_0490 0.76 -0.6
543,919 - Echvi_0490 0.76 -0.5
544,015 + Echvi_0490 0.87 -2.0
544,015 + Echvi_0490 0.87 -1.6
544,016 - Echvi_0490 0.87 -0.6
544,031 - Echvi_0490 0.88 -0.3
544,050 - +0.5
544,050 - -0.1
544,118 + -0.8
544,118 + +0.6
544,118 + -0.9
544,118 + -0.8
544,119 - -0.8
544,119 - -0.9
544,120 + +0.6
544,120 + -1.1
544,121 - -1.6
544,121 - -2.4
544,159 - -0.9
544,184 - +2.1
544,207 - -0.9
544,223 + +0.4
544,265 + -1.3
544,265 + +0.1
544,309 + -0.5
544,309 + -0.4
544,310 - -0.9
544,391 + Echvi_0491 0.19 -0.3
544,483 + Echvi_0491 0.30 -0.0
544,484 - Echvi_0491 0.31 -2.2
544,505 + Echvi_0491 0.33 -1.6
544,562 + Echvi_0491 0.40 +0.7
544,644 + Echvi_0491 0.50 -0.1
544,685 + Echvi_0491 0.55 -1.3
544,691 + Echvi_0491 0.56 -0.1
544,691 + Echvi_0491 0.56 -0.8
544,692 - Echvi_0491 0.56 -1.8
544,693 + Echvi_0491 0.56 -0.6
544,693 + Echvi_0491 0.56 -0.5
544,693 + Echvi_0491 0.56 -1.0
544,697 + Echvi_0491 0.57 +0.6
544,697 + Echvi_0491 0.57 -0.9
544,697 + Echvi_0491 0.57 -0.2
544,698 - Echvi_0491 0.57 -3.0
544,699 + Echvi_0491 0.57 -0.6
544,699 + Echvi_0491 0.57 -0.2
544,816 + Echvi_0491 0.72 -0.6
544,825 + Echvi_0491 0.73 +0.7
544,826 - Echvi_0491 0.73 +0.5
544,826 - Echvi_0491 0.73 -0.0
545,077 - -1.1
545,147 + -0.9
545,248 + -0.3
545,248 + +0.1
545,395 + Echvi_0492 0.14 +1.3
545,520 + Echvi_0492 0.21 -2.6
545,589 + Echvi_0492 0.25 -0.5
545,589 + Echvi_0492 0.25 -1.9
545,589 + Echvi_0492 0.25 +0.7
545,590 - Echvi_0492 0.25 +0.7
545,610 + Echvi_0492 0.27 -2.6
545,610 + Echvi_0492 0.27 -0.8
545,610 + Echvi_0492 0.27 -1.0
545,619 + Echvi_0492 0.27 -1.0
545,619 + Echvi_0492 0.27 +1.0
545,620 - Echvi_0492 0.27 +0.1
545,625 + Echvi_0492 0.27 +1.1
545,625 + Echvi_0492 0.27 -0.9
545,625 + Echvi_0492 0.27 +1.1
545,626 - Echvi_0492 0.28 -0.8
545,626 - Echvi_0492 0.28 -0.9
545,628 - Echvi_0492 0.28 -2.2
545,724 + Echvi_0492 0.33 +0.5
545,724 + Echvi_0492 0.33 +0.2
545,724 + Echvi_0492 0.33 -0.9
545,725 - Echvi_0492 0.33 +0.5
545,725 - Echvi_0492 0.33 -0.6
545,755 + Echvi_0492 0.35 -0.0
545,799 + Echvi_0492 0.38 +0.2
545,800 - Echvi_0492 0.38 -0.6
545,821 + Echvi_0492 0.39 +0.7
545,825 - Echvi_0492 0.39 -0.8

Or see this region's nucleotide sequence