Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0338 and Echvi_0339 overlap by 1 nucleotides Echvi_0339 and Echvi_0340 are separated by 192 nucleotides Echvi_0340 and Echvi_0341 are separated by 7 nucleotides
Echvi_0338: Echvi_0338 - Sua5/YciO/YrdC/YwlC family protein, at 360,209 to 361,171
_0338
Echvi_0339: Echvi_0339 - Tetratricopeptide repeat., at 361,171 to 361,866
_0339
Echvi_0340: Echvi_0340 - ADP-ribose pyrophosphatase, at 362,059 to 362,610
_0340
Echvi_0341: Echvi_0341 - hypothetical protein, at 362,618 to 363,199
_0341
Position (kb) 361
362 Strain fitness (log2 ratio) -1
0
1
2
3
4 at 360.179 kb on - strand at 360.180 kb on + strand at 361.249 kb on - strand, within Echvi_0339 at 361.518 kb on - strand, within Echvi_0339 at 361.522 kb on - strand, within Echvi_0339 at 361.522 kb on - strand, within Echvi_0339 at 361.558 kb on - strand, within Echvi_0339 at 361.560 kb on - strand, within Echvi_0339 at 361.560 kb on - strand, within Echvi_0339 at 361.560 kb on - strand, within Echvi_0339 at 361.599 kb on - strand, within Echvi_0339 at 361.599 kb on - strand, within Echvi_0339 at 361.629 kb on - strand, within Echvi_0339 at 361.636 kb on - strand, within Echvi_0339 at 361.660 kb on - strand, within Echvi_0339 at 361.732 kb on - strand, within Echvi_0339 at 361.767 kb on - strand, within Echvi_0339 at 361.771 kb on - strand, within Echvi_0339 at 361.783 kb on - strand, within Echvi_0339 at 361.944 kb on + strand at 361.944 kb on + strand at 361.944 kb on + strand at 361.944 kb on + strand at 361.945 kb on - strand at 361.945 kb on - strand at 362.051 kb on - strand at 362.052 kb on - strand at 362.144 kb on + strand, within Echvi_0340 at 362.150 kb on - strand, within Echvi_0340 at 362.221 kb on + strand, within Echvi_0340 at 362.221 kb on + strand, within Echvi_0340 at 362.222 kb on - strand, within Echvi_0340 at 362.222 kb on - strand, within Echvi_0340 at 362.307 kb on + strand, within Echvi_0340 at 362.396 kb on - strand, within Echvi_0340 at 362.605 kb on - strand at 362.611 kb on - strand at 362.620 kb on - strand at 362.634 kb on - strand at 362.642 kb on + strand at 362.642 kb on + strand at 362.643 kb on - strand at 362.643 kb on - strand at 362.644 kb on + strand at 362.645 kb on - strand at 362.673 kb on + strand at 362.673 kb on + strand at 362.674 kb on - strand at 362.674 kb on - strand at 362.674 kb on - strand at 362.804 kb on + strand, within Echvi_0341
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 360,179 - -0.3 360,180 + -1.1 361,249 - Echvi_0339 0.11 -0.6 361,518 - Echvi_0339 0.50 +2.1 361,522 - Echvi_0339 0.50 +1.2 361,522 - Echvi_0339 0.50 -0.1 361,558 - Echvi_0339 0.56 -0.1 361,560 - Echvi_0339 0.56 -1.0 361,560 - Echvi_0339 0.56 +1.3 361,560 - Echvi_0339 0.56 +0.9 361,599 - Echvi_0339 0.61 +0.9 361,599 - Echvi_0339 0.61 +0.8 361,629 - Echvi_0339 0.66 +1.3 361,636 - Echvi_0339 0.67 +0.6 361,660 - Echvi_0339 0.70 -0.3 361,732 - Echvi_0339 0.81 +1.3 361,767 - Echvi_0339 0.86 -1.4 361,771 - Echvi_0339 0.86 +0.0 361,783 - Echvi_0339 0.88 +0.6 361,944 + +0.5 361,944 + +0.6 361,944 + +2.1 361,944 + -1.2 361,945 - +0.3 361,945 - +0.6 362,051 - -0.4 362,052 - +0.3 362,144 + Echvi_0340 0.15 -0.4 362,150 - Echvi_0340 0.16 +0.0 362,221 + Echvi_0340 0.29 +4.0 362,221 + Echvi_0340 0.29 -0.7 362,222 - Echvi_0340 0.30 -0.3 362,222 - Echvi_0340 0.30 +0.5 362,307 + Echvi_0340 0.45 -1.5 362,396 - Echvi_0340 0.61 +0.8 362,605 - +1.4 362,611 - -0.0 362,620 - +0.9 362,634 - +1.1 362,642 + +0.1 362,642 + -0.3 362,643 - +0.5 362,643 - -0.9 362,644 + -0.0 362,645 - +0.6 362,673 + -0.8 362,673 + +0.9 362,674 - +1.1 362,674 - +0.6 362,674 - +1.2 362,804 + Echvi_0341 0.32 +0.7
Or see this region's nucleotide sequence