Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0321

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0320 and Echvi_0321 are separated by 169 nucleotidesEchvi_0321 and Echvi_0322 overlap by 26 nucleotides Echvi_0320: Echvi_0320 - Uncharacterized protein conserved in bacteria, at 333,561 to 334,484 _0320 Echvi_0321: Echvi_0321 - Glycerol-3-phosphate O-acyltransferase, at 334,654 to 336,354 _0321 Echvi_0322: Echvi_0322 - Glycerol-3-phosphate dehydrogenase, at 336,329 to 337,393 _0322 Position (kb) 334 335 336 337Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5 6 7at 333.736 kb on + strand, within Echvi_0320at 333.736 kb on + strand, within Echvi_0320at 333.736 kb on + strand, within Echvi_0320at 333.736 kb on + strand, within Echvi_0320at 333.736 kb on + strand, within Echvi_0320at 333.736 kb on + strandat 333.737 kb on - strand, within Echvi_0320at 333.737 kb on - strand, within Echvi_0320at 333.737 kb on - strand, within Echvi_0320at 333.761 kb on + strand, within Echvi_0320at 333.761 kb on + strand, within Echvi_0320at 333.761 kb on + strand, within Echvi_0320at 333.761 kb on + strand, within Echvi_0320at 333.772 kb on + strand, within Echvi_0320at 333.805 kb on + strand, within Echvi_0320at 333.849 kb on - strand, within Echvi_0320at 333.872 kb on + strand, within Echvi_0320at 333.873 kb on - strand, within Echvi_0320at 333.919 kb on + strand, within Echvi_0320at 333.920 kb on - strand, within Echvi_0320at 333.920 kb on - strand, within Echvi_0320at 334.072 kb on + strand, within Echvi_0320at 334.072 kb on + strand, within Echvi_0320at 334.111 kb on - strand, within Echvi_0320at 334.207 kb on + strand, within Echvi_0320at 334.295 kb on - strand, within Echvi_0320at 334.295 kb on - strand, within Echvi_0320at 334.295 kb on - strand, within Echvi_0320at 334.295 kb on - strand, within Echvi_0320at 334.302 kb on - strand, within Echvi_0320at 334.302 kb on - strand, within Echvi_0320at 334.302 kb on - strand, within Echvi_0320at 334.303 kb on + strand, within Echvi_0320at 334.303 kb on + strand, within Echvi_0320at 334.307 kb on + strand, within Echvi_0320at 334.327 kb on + strand, within Echvi_0320at 334.328 kb on - strand, within Echvi_0320at 334.328 kb on - strand, within Echvi_0320at 334.493 kb on + strandat 334.549 kb on - strandat 334.565 kb on + strandat 334.586 kb on - strandat 334.701 kb on + strandat 334.780 kb on - strandat 334.934 kb on + strand, within Echvi_0321at 335.103 kb on - strand, within Echvi_0321at 335.117 kb on + strand, within Echvi_0321at 335.149 kb on + strand, within Echvi_0321at 335.149 kb on + strand, within Echvi_0321at 335.308 kb on + strand, within Echvi_0321at 335.321 kb on + strand, within Echvi_0321at 335.355 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.583 kb on + strand, within Echvi_0321at 335.585 kb on + strand, within Echvi_0321at 335.586 kb on - strand, within Echvi_0321at 335.586 kb on - strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.623 kb on + strand, within Echvi_0321at 335.631 kb on + strand, within Echvi_0321at 335.689 kb on + strand, within Echvi_0321at 335.692 kb on + strand, within Echvi_0321at 335.692 kb on + strand, within Echvi_0321at 335.722 kb on + strand, within Echvi_0321at 335.812 kb on + strand, within Echvi_0321at 335.835 kb on + strand, within Echvi_0321at 335.853 kb on + strand, within Echvi_0321at 335.853 kb on + strand, within Echvi_0321at 335.853 kb on + strand, within Echvi_0321at 335.895 kb on - strand, within Echvi_0321at 335.895 kb on - strand, within Echvi_0321at 335.895 kb on - strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.900 kb on + strand, within Echvi_0321at 335.901 kb on - strand, within Echvi_0321at 335.901 kb on - strand, within Echvi_0321at 335.901 kb on - strand, within Echvi_0321at 335.901 kb on - strand, within Echvi_0321at 335.923 kb on + strand, within Echvi_0321at 335.923 kb on + strand, within Echvi_0321at 335.923 kb on + strand, within Echvi_0321at 335.924 kb on - strand, within Echvi_0321at 336.233 kb on - strandat 336.301 kb on + strandat 336.301 kb on + strandat 336.302 kb on - strandat 336.302 kb on - strandat 336.307 kb on + strandat 336.580 kb on - strand, within Echvi_0322at 336.912 kb on - strand, within Echvi_0322at 337.154 kb on + strand, within Echvi_0322at 337.327 kb on + strandat 337.346 kb on + strandat 337.346 kb on + strandat 337.349 kb on + strandat 337.350 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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333,736 + Echvi_0320 0.19 +2.1
333,736 + Echvi_0320 0.19 -3.6
333,736 + Echvi_0320 0.19 +0.6
333,736 + Echvi_0320 0.19 +0.3
333,736 + Echvi_0320 0.19 -0.1
333,736 + +2.6
333,737 - Echvi_0320 0.19 +0.5
333,737 - Echvi_0320 0.19 -0.0
333,737 - Echvi_0320 0.19 +1.3
333,761 + Echvi_0320 0.22 -0.1
333,761 + Echvi_0320 0.22 -0.0
333,761 + Echvi_0320 0.22 -0.2
333,761 + Echvi_0320 0.22 -1.1
333,772 + Echvi_0320 0.23 +0.6
333,805 + Echvi_0320 0.26 -1.1
333,849 - Echvi_0320 0.31 -0.3
333,872 + Echvi_0320 0.34 +1.5
333,873 - Echvi_0320 0.34 -0.3
333,919 + Echvi_0320 0.39 -2.1
333,920 - Echvi_0320 0.39 -1.1
333,920 - Echvi_0320 0.39 -0.1
334,072 + Echvi_0320 0.55 -0.2
334,072 + Echvi_0320 0.55 +0.4
334,111 - Echvi_0320 0.60 +0.1
334,207 + Echvi_0320 0.70 -0.4
334,295 - Echvi_0320 0.79 +1.1
334,295 - Echvi_0320 0.79 +0.6
334,295 - Echvi_0320 0.79 +0.4
334,295 - Echvi_0320 0.79 +0.8
334,302 - Echvi_0320 0.80 +2.1
334,302 - Echvi_0320 0.80 -0.7
334,302 - Echvi_0320 0.80 +0.1
334,303 + Echvi_0320 0.80 +2.4
334,303 + Echvi_0320 0.80 +1.5
334,307 + Echvi_0320 0.81 -0.7
334,327 + Echvi_0320 0.83 -0.8
334,328 - Echvi_0320 0.83 -0.4
334,328 - Echvi_0320 0.83 +0.5
334,493 + -2.3
334,549 - -0.1
334,565 + +1.3
334,586 - +1.8
334,701 + +0.4
334,780 - +4.1
334,934 + Echvi_0321 0.16 -0.4
335,103 - Echvi_0321 0.26 +2.2
335,117 + Echvi_0321 0.27 +0.2
335,149 + Echvi_0321 0.29 +0.5
335,149 + Echvi_0321 0.29 -1.3
335,308 + Echvi_0321 0.38 -0.7
335,321 + Echvi_0321 0.39 -0.5
335,355 + Echvi_0321 0.41 +0.5
335,583 + Echvi_0321 0.55 +0.5
335,583 + Echvi_0321 0.55 -1.0
335,583 + Echvi_0321 0.55 +1.1
335,583 + Echvi_0321 0.55 -0.0
335,583 + Echvi_0321 0.55 +0.7
335,585 + Echvi_0321 0.55 -0.2
335,586 - Echvi_0321 0.55 +1.8
335,586 - Echvi_0321 0.55 +2.0
335,623 + Echvi_0321 0.57 +0.5
335,623 + Echvi_0321 0.57 -0.1
335,623 + Echvi_0321 0.57 -2.9
335,623 + Echvi_0321 0.57 +0.8
335,623 + Echvi_0321 0.57 +0.1
335,631 + Echvi_0321 0.57 +0.1
335,689 + Echvi_0321 0.61 +0.8
335,692 + Echvi_0321 0.61 -0.4
335,692 + Echvi_0321 0.61 +0.1
335,722 + Echvi_0321 0.63 +0.7
335,812 + Echvi_0321 0.68 -1.0
335,835 + Echvi_0321 0.69 +1.3
335,853 + Echvi_0321 0.70 +1.4
335,853 + Echvi_0321 0.70 +0.3
335,853 + Echvi_0321 0.70 +1.3
335,895 - Echvi_0321 0.73 +2.9
335,895 - Echvi_0321 0.73 +2.6
335,895 - Echvi_0321 0.73 +3.6
335,900 + Echvi_0321 0.73 +0.7
335,900 + Echvi_0321 0.73 +0.3
335,900 + Echvi_0321 0.73 +0.7
335,900 + Echvi_0321 0.73 -0.1
335,900 + Echvi_0321 0.73 +0.2
335,900 + Echvi_0321 0.73 -0.9
335,900 + Echvi_0321 0.73 -0.9
335,901 - Echvi_0321 0.73 +2.6
335,901 - Echvi_0321 0.73 +2.9
335,901 - Echvi_0321 0.73 +3.1
335,901 - Echvi_0321 0.73 +3.6
335,923 + Echvi_0321 0.75 +0.4
335,923 + Echvi_0321 0.75 -0.2
335,923 + Echvi_0321 0.75 -0.4
335,924 - Echvi_0321 0.75 +5.8
336,233 - +3.4
336,301 + +2.6
336,301 + -0.2
336,302 - +2.0
336,302 - +2.0
336,307 + +0.1
336,580 - Echvi_0322 0.24 +7.5
336,912 - Echvi_0322 0.55 +3.8
337,154 + Echvi_0322 0.77 +4.1
337,327 + +2.1
337,346 + -1.4
337,346 + +0.4
337,349 + +0.5
337,350 - +1.1

Or see this region's nucleotide sequence