Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0283 and Echvi_0284 are separated by 216 nucleotides Echvi_0284 and Echvi_0285 are separated by 6 nucleotides Echvi_0285 and Echvi_0286 are separated by 17 nucleotides Echvi_0286 and Echvi_0287 are separated by 29 nucleotides
Echvi_0283: Echvi_0283 - PAP2 superfamily., at 294,587 to 295,933
_0283
Echvi_0284: Echvi_0284 - nicotinate (nicotinamide) nucleotide adenylyltransferase, at 296,150 to 296,716
_0284
Echvi_0285: Echvi_0285 - guanylate kinase, at 296,723 to 297,295
_0285
Echvi_0286: Echvi_0286 - hypothetical protein, at 297,313 to 297,585
_0286
Echvi_0287: Echvi_0287 - RNA polymerase sigma factor, sigma-70 family, at 297,615 to 298,205
_0287
Position (kb) 296
297 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 295.184 kb on + strand, within Echvi_0283 at 295.185 kb on - strand, within Echvi_0283 at 295.302 kb on - strand, within Echvi_0283 at 295.302 kb on - strand, within Echvi_0283 at 295.308 kb on + strand, within Echvi_0283 at 295.309 kb on - strand, within Echvi_0283 at 295.309 kb on - strand, within Echvi_0283 at 295.309 kb on - strand, within Echvi_0283 at 295.309 kb on - strand, within Echvi_0283 at 295.508 kb on - strand, within Echvi_0283 at 295.589 kb on + strand, within Echvi_0283 at 295.641 kb on - strand, within Echvi_0283 at 295.748 kb on - strand, within Echvi_0283 at 295.761 kb on - strand, within Echvi_0283 at 295.761 kb on - strand, within Echvi_0283 at 295.772 kb on - strand, within Echvi_0283 at 295.816 kb on + strand at 295.826 kb on - strand at 295.924 kb on + strand at 296.084 kb on + strand at 296.084 kb on + strand at 296.085 kb on - strand at 296.085 kb on - strand at 296.115 kb on + strand at 296.115 kb on + strand at 296.115 kb on + strand at 296.115 kb on + strand at 296.116 kb on - strand at 296.116 kb on - strand at 296.116 kb on - strand at 296.148 kb on + strand at 296.725 kb on - strand at 296.725 kb on - strand at 296.725 kb on - strand at 297.457 kb on - strand, within Echvi_0286 at 297.635 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 295,184 + Echvi_0283 0.44 +0.1 295,185 - Echvi_0283 0.44 +0.6 295,302 - Echvi_0283 0.53 -1.5 295,302 - Echvi_0283 0.53 -0.2 295,308 + Echvi_0283 0.54 +0.5 295,309 - Echvi_0283 0.54 +1.1 295,309 - Echvi_0283 0.54 -1.5 295,309 - Echvi_0283 0.54 +1.1 295,309 - Echvi_0283 0.54 -0.0 295,508 - Echvi_0283 0.68 -0.6 295,589 + Echvi_0283 0.74 -0.4 295,641 - Echvi_0283 0.78 -2.5 295,748 - Echvi_0283 0.86 -0.9 295,761 - Echvi_0283 0.87 +1.1 295,761 - Echvi_0283 0.87 -0.9 295,772 - Echvi_0283 0.88 +0.7 295,816 + -0.4 295,826 - -0.5 295,924 + +0.9 296,084 + -0.5 296,084 + +1.0 296,085 - -0.4 296,085 - +0.2 296,115 + -1.1 296,115 + -1.9 296,115 + -0.5 296,115 + -0.0 296,116 - +0.6 296,116 - -0.8 296,116 - +0.1 296,148 + -1.0 296,725 - +2.9 296,725 - -0.5 296,725 - -0.4 297,457 - Echvi_0286 0.53 -0.7 297,635 - -0.1
Or see this region's nucleotide sequence