Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0176 and Echvi_0177 overlap by 4 nucleotides Echvi_0177 and Echvi_0178 are separated by 2 nucleotides
Echvi_0176: Echvi_0176 - conserved repeat domain, at 191,926 to 193,527
_0176
Echvi_0177: Echvi_0177 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 193,524 to 195,848
_0177
Echvi_0178: Echvi_0178 - Bacteroidetes-specific putative membrane protein, at 195,851 to 196,819
_0178
Position (kb) 193
194
195
196 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 192.649 kb on + strand, within Echvi_0176 at 192.661 kb on + strand, within Echvi_0176 at 192.814 kb on + strand, within Echvi_0176 at 192.814 kb on + strand, within Echvi_0176 at 192.823 kb on + strand, within Echvi_0176 at 192.833 kb on + strand, within Echvi_0176 at 192.858 kb on + strand, within Echvi_0176 at 192.858 kb on + strand, within Echvi_0176 at 192.870 kb on + strand, within Echvi_0176 at 192.918 kb on + strand, within Echvi_0176 at 192.919 kb on - strand, within Echvi_0176 at 192.923 kb on + strand, within Echvi_0176 at 192.971 kb on + strand, within Echvi_0176 at 192.971 kb on + strand, within Echvi_0176 at 192.994 kb on + strand, within Echvi_0176 at 192.996 kb on + strand, within Echvi_0176 at 192.997 kb on - strand, within Echvi_0176 at 193.005 kb on + strand, within Echvi_0176 at 193.005 kb on + strand, within Echvi_0176 at 193.006 kb on - strand, within Echvi_0176 at 193.006 kb on - strand, within Echvi_0176 at 193.008 kb on + strand, within Echvi_0176 at 193.027 kb on + strand, within Echvi_0176 at 193.045 kb on - strand, within Echvi_0176 at 193.063 kb on + strand, within Echvi_0176 at 193.064 kb on - strand, within Echvi_0176 at 193.112 kb on - strand, within Echvi_0176 at 193.125 kb on + strand, within Echvi_0176 at 193.150 kb on + strand, within Echvi_0176 at 193.150 kb on + strand, within Echvi_0176 at 193.150 kb on + strand, within Echvi_0176 at 193.151 kb on - strand, within Echvi_0176 at 193.151 kb on - strand, within Echvi_0176 at 193.188 kb on + strand, within Echvi_0176 at 193.188 kb on + strand, within Echvi_0176 at 193.189 kb on - strand, within Echvi_0176 at 193.189 kb on - strand, within Echvi_0176 at 193.191 kb on + strand, within Echvi_0176 at 193.209 kb on + strand, within Echvi_0176 at 193.209 kb on + strand, within Echvi_0176 at 193.210 kb on - strand, within Echvi_0176 at 193.210 kb on - strand, within Echvi_0176 at 193.295 kb on + strand, within Echvi_0176 at 193.335 kb on - strand, within Echvi_0176 at 193.352 kb on - strand, within Echvi_0176 at 193.352 kb on - strand, within Echvi_0176 at 193.404 kb on + strand at 193.504 kb on + strand at 193.505 kb on - strand at 193.515 kb on + strand at 193.515 kb on + strand at 193.517 kb on + strand at 193.517 kb on + strand at 193.517 kb on + strand at 193.518 kb on - strand at 193.518 kb on - strand at 193.518 kb on - strand at 193.522 kb on + strand at 193.542 kb on + strand at 193.543 kb on - strand at 193.638 kb on - strand at 193.666 kb on + strand at 193.667 kb on - strand at 193.667 kb on - strand at 193.707 kb on - strand at 193.791 kb on + strand, within Echvi_0177 at 193.791 kb on + strand, within Echvi_0177 at 193.792 kb on - strand, within Echvi_0177 at 193.860 kb on + strand, within Echvi_0177 at 193.860 kb on + strand, within Echvi_0177 at 193.860 kb on + strand, within Echvi_0177 at 193.861 kb on - strand, within Echvi_0177 at 193.882 kb on + strand, within Echvi_0177 at 194.071 kb on + strand, within Echvi_0177 at 194.071 kb on + strand, within Echvi_0177 at 194.117 kb on - strand, within Echvi_0177 at 194.117 kb on - strand, within Echvi_0177 at 194.178 kb on + strand, within Echvi_0177 at 194.178 kb on + strand, within Echvi_0177 at 194.251 kb on + strand, within Echvi_0177 at 194.251 kb on + strand, within Echvi_0177 at 194.251 kb on + strand, within Echvi_0177 at 194.368 kb on + strand, within Echvi_0177 at 194.444 kb on + strand, within Echvi_0177 at 194.445 kb on - strand, within Echvi_0177 at 194.454 kb on + strand, within Echvi_0177 at 194.455 kb on - strand, within Echvi_0177 at 194.513 kb on + strand, within Echvi_0177 at 194.514 kb on - strand, within Echvi_0177 at 194.563 kb on + strand, within Echvi_0177 at 194.568 kb on - strand, within Echvi_0177 at 194.591 kb on + strand, within Echvi_0177 at 194.740 kb on + strand, within Echvi_0177 at 194.819 kb on + strand, within Echvi_0177 at 194.820 kb on - strand, within Echvi_0177 at 194.870 kb on + strand, within Echvi_0177 at 194.875 kb on + strand, within Echvi_0177 at 194.875 kb on + strand, within Echvi_0177 at 194.887 kb on + strand, within Echvi_0177 at 194.888 kb on - strand, within Echvi_0177 at 194.888 kb on - strand, within Echvi_0177 at 194.932 kb on + strand, within Echvi_0177 at 194.932 kb on + strand, within Echvi_0177 at 194.959 kb on + strand, within Echvi_0177 at 195.002 kb on - strand, within Echvi_0177 at 195.008 kb on - strand, within Echvi_0177 at 195.013 kb on + strand, within Echvi_0177 at 195.013 kb on + strand, within Echvi_0177 at 195.036 kb on - strand, within Echvi_0177 at 195.036 kb on - strand, within Echvi_0177 at 195.036 kb on - strand, within Echvi_0177 at 195.046 kb on + strand, within Echvi_0177 at 195.049 kb on + strand, within Echvi_0177 at 195.050 kb on - strand, within Echvi_0177 at 195.145 kb on - strand, within Echvi_0177 at 195.170 kb on + strand, within Echvi_0177 at 195.171 kb on - strand, within Echvi_0177 at 195.200 kb on + strand, within Echvi_0177 at 195.201 kb on - strand, within Echvi_0177 at 195.215 kb on + strand, within Echvi_0177 at 195.226 kb on + strand, within Echvi_0177 at 195.234 kb on + strand, within Echvi_0177 at 195.238 kb on + strand, within Echvi_0177 at 195.239 kb on - strand, within Echvi_0177 at 195.259 kb on + strand, within Echvi_0177 at 195.260 kb on - strand, within Echvi_0177 at 195.275 kb on - strand, within Echvi_0177 at 195.300 kb on + strand, within Echvi_0177 at 195.309 kb on + strand, within Echvi_0177 at 195.310 kb on - strand, within Echvi_0177 at 195.352 kb on + strand, within Echvi_0177 at 195.357 kb on - strand, within Echvi_0177 at 195.383 kb on + strand, within Echvi_0177 at 195.384 kb on - strand, within Echvi_0177 at 195.384 kb on - strand, within Echvi_0177 at 195.410 kb on + strand, within Echvi_0177 at 195.411 kb on - strand, within Echvi_0177 at 195.459 kb on - strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.464 kb on + strand, within Echvi_0177 at 195.465 kb on - strand, within Echvi_0177 at 195.465 kb on - strand, within Echvi_0177 at 195.465 kb on - strand, within Echvi_0177 at 195.466 kb on + strand, within Echvi_0177 at 195.466 kb on + strand, within Echvi_0177 at 195.466 kb on + strand, within Echvi_0177 at 195.466 kb on + strand, within Echvi_0177 at 195.476 kb on + strand, within Echvi_0177 at 195.494 kb on + strand, within Echvi_0177 at 195.519 kb on + strand, within Echvi_0177 at 195.519 kb on + strand, within Echvi_0177 at 195.600 kb on + strand, within Echvi_0177 at 195.710 kb on + strand at 195.710 kb on + strand at 195.712 kb on + strand at 195.712 kb on + strand at 195.713 kb on - strand at 195.727 kb on - strand at 195.727 kb on - strand at 195.727 kb on - strand at 195.731 kb on + strand at 195.731 kb on + strand at 195.731 kb on + strand at 195.733 kb on + strand at 195.733 kb on + strand at 195.733 kb on + strand at 195.734 kb on - strand at 195.820 kb on - strand at 195.824 kb on + strand at 195.825 kb on - strand at 195.825 kb on - strand at 195.829 kb on - strand at 195.829 kb on - strand at 195.897 kb on + strand at 195.897 kb on + strand at 195.898 kb on - strand at 195.898 kb on - strand at 195.934 kb on + strand at 195.935 kb on - strand at 195.955 kb on + strand, within Echvi_0178 at 195.955 kb on + strand, within Echvi_0178 at 195.955 kb on + strand, within Echvi_0178 at 195.956 kb on - strand, within Echvi_0178 at 195.956 kb on - strand, within Echvi_0178 at 195.963 kb on + strand, within Echvi_0178 at 195.974 kb on + strand, within Echvi_0178 at 195.974 kb on + strand, within Echvi_0178 at 196.009 kb on + strand, within Echvi_0178 at 196.107 kb on + strand, within Echvi_0178 at 196.108 kb on - strand, within Echvi_0178 at 196.139 kb on - strand, within Echvi_0178 at 196.139 kb on - strand, within Echvi_0178 at 196.228 kb on - strand, within Echvi_0178 at 196.228 kb on - strand, within Echvi_0178 at 196.246 kb on - strand, within Echvi_0178 at 196.253 kb on + strand, within Echvi_0178 at 196.279 kb on + strand, within Echvi_0178 at 196.327 kb on + strand, within Echvi_0178 at 196.327 kb on + strand, within Echvi_0178 at 196.331 kb on - strand, within Echvi_0178 at 196.343 kb on + strand, within Echvi_0178 at 196.349 kb on + strand, within Echvi_0178 at 196.349 kb on + strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.354 kb on + strand, within Echvi_0178 at 196.364 kb on + strand, within Echvi_0178 at 196.406 kb on + strand, within Echvi_0178 at 196.420 kb on + strand, within Echvi_0178 at 196.426 kb on - strand, within Echvi_0178 at 196.437 kb on + strand, within Echvi_0178 at 196.506 kb on + strand, within Echvi_0178 at 196.506 kb on + strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.579 kb on + strand, within Echvi_0178 at 196.656 kb on + strand, within Echvi_0178 at 196.657 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.687 kb on - strand, within Echvi_0178 at 196.687 kb on - strand, within Echvi_0178 at 196.708 kb on + strand, within Echvi_0178 at 196.709 kb on - strand, within Echvi_0178 at 196.709 kb on - strand, within Echvi_0178 at 196.724 kb on + strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.727 kb on - strand at 196.728 kb on + strand at 196.728 kb on + strand at 196.729 kb on - strand at 196.766 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 192,649 + Echvi_0176 0.45 -0.7 192,661 + Echvi_0176 0.46 -1.5 192,814 + Echvi_0176 0.55 -1.1 192,814 + Echvi_0176 0.55 +0.2 192,823 + Echvi_0176 0.56 -0.8 192,833 + Echvi_0176 0.57 -0.7 192,858 + Echvi_0176 0.58 +2.0 192,858 + Echvi_0176 0.58 -0.1 192,870 + Echvi_0176 0.59 +0.2 192,918 + Echvi_0176 0.62 +2.0 192,919 - Echvi_0176 0.62 -0.8 192,923 + Echvi_0176 0.62 -0.4 192,971 + Echvi_0176 0.65 -0.2 192,971 + Echvi_0176 0.65 -0.1 192,994 + Echvi_0176 0.67 +0.1 192,996 + Echvi_0176 0.67 -2.0 192,997 - Echvi_0176 0.67 +1.3 193,005 + Echvi_0176 0.67 -1.3 193,005 + Echvi_0176 0.67 -1.3 193,006 - Echvi_0176 0.67 -1.2 193,006 - Echvi_0176 0.67 -0.6 193,008 + Echvi_0176 0.68 -0.4 193,027 + Echvi_0176 0.69 -1.0 193,045 - Echvi_0176 0.70 -0.2 193,063 + Echvi_0176 0.71 +0.8 193,064 - Echvi_0176 0.71 +0.2 193,112 - Echvi_0176 0.74 -1.6 193,125 + Echvi_0176 0.75 -1.4 193,150 + Echvi_0176 0.76 -1.7 193,150 + Echvi_0176 0.76 -0.1 193,150 + Echvi_0176 0.76 +0.5 193,151 - Echvi_0176 0.76 +0.5 193,151 - Echvi_0176 0.76 -2.4 193,188 + Echvi_0176 0.79 +0.3 193,188 + Echvi_0176 0.79 +0.9 193,189 - Echvi_0176 0.79 -0.7 193,189 - Echvi_0176 0.79 -1.3 193,191 + Echvi_0176 0.79 +2.2 193,209 + Echvi_0176 0.80 +0.0 193,209 + Echvi_0176 0.80 +2.6 193,210 - Echvi_0176 0.80 -0.8 193,210 - Echvi_0176 0.80 -2.4 193,295 + Echvi_0176 0.85 +0.0 193,335 - Echvi_0176 0.88 +0.1 193,352 - Echvi_0176 0.89 -0.7 193,352 - Echvi_0176 0.89 -0.3 193,404 + +0.3 193,504 + -1.6 193,505 - +1.0 193,515 + -0.7 193,515 + -2.1 193,517 + +0.5 193,517 + +0.3 193,517 + -1.3 193,518 - -0.2 193,518 - +0.9 193,518 - -0.7 193,522 + +0.2 193,542 + -1.1 193,543 - +2.0 193,638 - -1.1 193,666 + +1.5 193,667 - +2.0 193,667 - -1.0 193,707 - +1.0 193,791 + Echvi_0177 0.11 -0.8 193,791 + Echvi_0177 0.11 +2.6 193,792 - Echvi_0177 0.12 -1.0 193,860 + Echvi_0177 0.14 -0.4 193,860 + Echvi_0177 0.14 -1.5 193,860 + Echvi_0177 0.14 -1.9 193,861 - Echvi_0177 0.14 +1.8 193,882 + Echvi_0177 0.15 -1.3 194,071 + Echvi_0177 0.24 -1.9 194,071 + Echvi_0177 0.24 +0.8 194,117 - Echvi_0177 0.26 -0.5 194,117 - Echvi_0177 0.26 -1.7 194,178 + Echvi_0177 0.28 -0.4 194,178 + Echvi_0177 0.28 -1.0 194,251 + Echvi_0177 0.31 -1.0 194,251 + Echvi_0177 0.31 -0.3 194,251 + Echvi_0177 0.31 -0.2 194,368 + Echvi_0177 0.36 +0.1 194,444 + Echvi_0177 0.40 -0.3 194,445 - Echvi_0177 0.40 -0.6 194,454 + Echvi_0177 0.40 -0.7 194,455 - Echvi_0177 0.40 -1.4 194,513 + Echvi_0177 0.43 -0.4 194,514 - Echvi_0177 0.43 -0.3 194,563 + Echvi_0177 0.45 -0.7 194,568 - Echvi_0177 0.45 -2.2 194,591 + Echvi_0177 0.46 -0.2 194,740 + Echvi_0177 0.52 -1.4 194,819 + Echvi_0177 0.56 +0.2 194,820 - Echvi_0177 0.56 -1.1 194,870 + Echvi_0177 0.58 +0.1 194,875 + Echvi_0177 0.58 -0.1 194,875 + Echvi_0177 0.58 -0.6 194,887 + Echvi_0177 0.59 +0.2 194,888 - Echvi_0177 0.59 +1.0 194,888 - Echvi_0177 0.59 +2.0 194,932 + Echvi_0177 0.61 -1.1 194,932 + Echvi_0177 0.61 +1.0 194,959 + Echvi_0177 0.62 -1.9 195,002 - Echvi_0177 0.64 +1.5 195,008 - Echvi_0177 0.64 -1.0 195,013 + Echvi_0177 0.64 -0.5 195,013 + Echvi_0177 0.64 -1.3 195,036 - Echvi_0177 0.65 +2.0 195,036 - Echvi_0177 0.65 -1.7 195,036 - Echvi_0177 0.65 -0.9 195,046 + Echvi_0177 0.65 -1.0 195,049 + Echvi_0177 0.66 +1.0 195,050 - Echvi_0177 0.66 -1.2 195,145 - Echvi_0177 0.70 +1.1 195,170 + Echvi_0177 0.71 +0.8 195,171 - Echvi_0177 0.71 -0.1 195,200 + Echvi_0177 0.72 +0.2 195,201 - Echvi_0177 0.72 -0.8 195,215 + Echvi_0177 0.73 -1.0 195,226 + Echvi_0177 0.73 -0.5 195,234 + Echvi_0177 0.74 -1.2 195,238 + Echvi_0177 0.74 +0.2 195,239 - Echvi_0177 0.74 -0.3 195,259 + Echvi_0177 0.75 -1.3 195,260 - Echvi_0177 0.75 -0.5 195,275 - Echvi_0177 0.75 -1.1 195,300 + Echvi_0177 0.76 -0.1 195,309 + Echvi_0177 0.77 -1.5 195,310 - Echvi_0177 0.77 +0.4 195,352 + Echvi_0177 0.79 -0.7 195,357 - Echvi_0177 0.79 +0.4 195,383 + Echvi_0177 0.80 -1.2 195,384 - Echvi_0177 0.80 -2.0 195,384 - Echvi_0177 0.80 -0.6 195,410 + Echvi_0177 0.81 -0.4 195,411 - Echvi_0177 0.81 +0.5 195,459 - Echvi_0177 0.83 -0.8 195,464 + Echvi_0177 0.83 -1.0 195,464 + Echvi_0177 0.83 +0.4 195,464 + Echvi_0177 0.83 -0.6 195,464 + Echvi_0177 0.83 -1.2 195,464 + Echvi_0177 0.83 +0.5 195,464 + Echvi_0177 0.83 -0.4 195,465 - Echvi_0177 0.83 -0.3 195,465 - Echvi_0177 0.83 -2.0 195,465 - Echvi_0177 0.83 -0.3 195,466 + Echvi_0177 0.84 -0.9 195,466 + Echvi_0177 0.84 -1.4 195,466 + Echvi_0177 0.84 -0.6 195,466 + Echvi_0177 0.84 -1.2 195,476 + Echvi_0177 0.84 +0.7 195,494 + Echvi_0177 0.85 -2.0 195,519 + Echvi_0177 0.86 +0.5 195,519 + Echvi_0177 0.86 +1.0 195,600 + Echvi_0177 0.89 -0.6 195,710 + -2.0 195,710 + +0.3 195,712 + -2.2 195,712 + +0.2 195,713 - -1.1 195,727 - -0.1 195,727 - -2.6 195,727 - -1.8 195,731 + +1.0 195,731 + +1.0 195,731 + +0.2 195,733 + -0.0 195,733 + -0.3 195,733 + +0.9 195,734 - -0.7 195,820 - -0.2 195,824 + +0.0 195,825 - -0.7 195,825 - -0.3 195,829 - -0.3 195,829 - +0.5 195,897 + -1.2 195,897 + -2.9 195,898 - +1.3 195,898 - -1.0 195,934 + +0.6 195,935 - +0.5 195,955 + Echvi_0178 0.11 -0.8 195,955 + Echvi_0178 0.11 -0.6 195,955 + Echvi_0178 0.11 -1.0 195,956 - Echvi_0178 0.11 -1.9 195,956 - Echvi_0178 0.11 -2.7 195,963 + Echvi_0178 0.12 +0.5 195,974 + Echvi_0178 0.13 -1.0 195,974 + Echvi_0178 0.13 +0.5 196,009 + Echvi_0178 0.16 -1.1 196,107 + Echvi_0178 0.26 +1.0 196,108 - Echvi_0178 0.27 -0.7 196,139 - Echvi_0178 0.30 +1.0 196,139 - Echvi_0178 0.30 -0.9 196,228 - Echvi_0178 0.39 -0.8 196,228 - Echvi_0178 0.39 -0.5 196,246 - Echvi_0178 0.41 +0.1 196,253 + Echvi_0178 0.41 -2.7 196,279 + Echvi_0178 0.44 -0.5 196,327 + Echvi_0178 0.49 -0.7 196,327 + Echvi_0178 0.49 -0.1 196,331 - Echvi_0178 0.50 -0.7 196,343 + Echvi_0178 0.51 +0.0 196,349 + Echvi_0178 0.51 -0.9 196,349 + Echvi_0178 0.51 -0.0 196,350 - Echvi_0178 0.51 -0.5 196,350 - Echvi_0178 0.51 -0.1 196,350 - Echvi_0178 0.51 -1.0 196,354 + Echvi_0178 0.52 -0.4 196,364 + Echvi_0178 0.53 +0.0 196,406 + Echvi_0178 0.57 +1.3 196,420 + Echvi_0178 0.59 +0.7 196,426 - Echvi_0178 0.59 -0.5 196,437 + Echvi_0178 0.60 +0.0 196,506 + Echvi_0178 0.68 -0.6 196,506 + Echvi_0178 0.68 -0.8 196,507 - Echvi_0178 0.68 -0.5 196,507 - Echvi_0178 0.68 +1.6 196,507 - Echvi_0178 0.68 +0.5 196,579 + Echvi_0178 0.75 -1.5 196,656 + Echvi_0178 0.83 -1.4 196,657 - Echvi_0178 0.83 -0.7 196,672 - Echvi_0178 0.85 +0.3 196,672 - Echvi_0178 0.85 +0.7 196,672 - Echvi_0178 0.85 -0.1 196,687 - Echvi_0178 0.86 -0.4 196,687 - Echvi_0178 0.86 -0.5 196,708 + Echvi_0178 0.88 -1.5 196,709 - Echvi_0178 0.89 -0.7 196,709 - Echvi_0178 0.89 +0.1 196,724 + -0.8 196,726 + +0.9 196,726 + -0.6 196,727 - -0.5 196,728 + +0.3 196,728 + +0.1 196,729 - -1.1 196,766 + +1.5
Or see this region's nucleotide sequence