Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0159

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0158 and Echvi_0159 are separated by 457 nucleotidesEchvi_0159 and Echvi_0160 are separated by 172 nucleotides Echvi_0158: Echvi_0158 - Predicted phosphosugar isomerases, at 159,864 to 161,036 _0158 Echvi_0159: Echvi_0159 - Cellulase M and related proteins, at 161,494 to 162,561 _0159 Echvi_0160: Echvi_0160 - Acetyl-CoA carboxylase, carboxyltransferase component (subunits alpha and beta), at 162,734 to 164,317 _0160 Position (kb) 161 162 163Strain fitness (log2 ratio) -2 -1 0 1 2 3at 160.599 kb on - strand, within Echvi_0158at 160.611 kb on + strand, within Echvi_0158at 160.611 kb on + strand, within Echvi_0158at 160.611 kb on + strand, within Echvi_0158at 160.611 kb on + strand, within Echvi_0158at 160.612 kb on - strand, within Echvi_0158at 160.620 kb on + strand, within Echvi_0158at 160.620 kb on + strand, within Echvi_0158at 160.620 kb on + strand, within Echvi_0158at 160.620 kb on + strand, within Echvi_0158at 160.673 kb on + strand, within Echvi_0158at 160.673 kb on + strand, within Echvi_0158at 160.674 kb on - strand, within Echvi_0158at 160.754 kb on + strand, within Echvi_0158at 160.754 kb on + strand, within Echvi_0158at 160.821 kb on - strand, within Echvi_0158at 160.877 kb on + strand, within Echvi_0158at 160.878 kb on - strand, within Echvi_0158at 160.959 kb on + strandat 160.960 kb on - strandat 160.960 kb on - strandat 161.031 kb on + strandat 161.032 kb on - strandat 161.042 kb on - strandat 161.053 kb on + strandat 161.243 kb on + strandat 161.255 kb on + strandat 161.255 kb on + strandat 161.255 kb on + strandat 161.255 kb on + strandat 161.319 kb on + strandat 161.320 kb on - strandat 161.438 kb on - strandat 161.466 kb on + strandat 161.466 kb on + strandat 161.504 kb on + strandat 161.504 kb on + strandat 161.504 kb on + strandat 161.508 kb on + strandat 161.565 kb on + strandat 161.568 kb on + strandat 161.569 kb on - strandat 161.569 kb on - strandat 161.569 kb on - strandat 161.569 kb on - strandat 161.601 kb on + strand, within Echvi_0159at 161.601 kb on + strand, within Echvi_0159at 161.601 kb on + strand, within Echvi_0159at 161.601 kb on + strand, within Echvi_0159at 161.601 kb on + strand, within Echvi_0159at 161.602 kb on - strand, within Echvi_0159at 161.607 kb on + strand, within Echvi_0159at 161.607 kb on + strand, within Echvi_0159at 161.607 kb on + strand, within Echvi_0159at 161.608 kb on - strand, within Echvi_0159at 161.608 kb on - strand, within Echvi_0159at 161.609 kb on + strand, within Echvi_0159at 161.610 kb on - strand, within Echvi_0159at 161.610 kb on - strand, within Echvi_0159at 161.685 kb on + strand, within Echvi_0159at 161.780 kb on + strand, within Echvi_0159at 161.781 kb on - strand, within Echvi_0159at 161.781 kb on - strand, within Echvi_0159at 161.830 kb on - strand, within Echvi_0159at 161.834 kb on + strand, within Echvi_0159at 161.834 kb on + strand, within Echvi_0159at 161.835 kb on - strand, within Echvi_0159at 161.954 kb on + strand, within Echvi_0159at 161.954 kb on + strand, within Echvi_0159at 161.954 kb on + strand, within Echvi_0159at 161.955 kb on - strand, within Echvi_0159at 161.955 kb on - strand, within Echvi_0159at 161.955 kb on - strand, within Echvi_0159at 161.955 kb on - strand, within Echvi_0159at 162.015 kb on + strand, within Echvi_0159at 162.015 kb on - strand, within Echvi_0159at 162.016 kb on - strand, within Echvi_0159at 162.016 kb on - strand, within Echvi_0159at 162.017 kb on + strand, within Echvi_0159at 162.017 kb on + strand, within Echvi_0159at 162.018 kb on - strand, within Echvi_0159at 162.192 kb on + strand, within Echvi_0159at 162.192 kb on + strand, within Echvi_0159at 162.246 kb on + strand, within Echvi_0159at 162.255 kb on + strand, within Echvi_0159at 162.261 kb on + strand, within Echvi_0159at 162.261 kb on + strand, within Echvi_0159at 162.261 kb on + strand, within Echvi_0159at 162.261 kb on + strand, within Echvi_0159at 162.317 kb on + strand, within Echvi_0159at 162.317 kb on + strand, within Echvi_0159at 162.317 kb on + strand, within Echvi_0159at 162.318 kb on - strand, within Echvi_0159at 162.321 kb on + strand, within Echvi_0159at 162.321 kb on + strand, within Echvi_0159at 162.321 kb on + strand, within Echvi_0159at 162.321 kb on + strand, within Echvi_0159at 162.323 kb on + strand, within Echvi_0159at 162.324 kb on - strand, within Echvi_0159at 162.341 kb on + strand, within Echvi_0159at 162.341 kb on + strand, within Echvi_0159at 162.431 kb on + strand, within Echvi_0159at 162.459 kb on - strandat 162.459 kb on - strandat 162.468 kb on + strandat 162.469 kb on - strandat 162.482 kb on - strandat 162.482 kb on - strandat 162.482 kb on - strandat 162.482 kb on - strandat 162.531 kb on - strandat 162.531 kb on - strandat 162.570 kb on + strandat 162.570 kb on + strandat 162.595 kb on - strandat 162.595 kb on - strandat 162.595 kb on - strandat 162.600 kb on + strandat 162.604 kb on + strandat 162.604 kb on + strandat 162.605 kb on - strandat 162.626 kb on - strandat 162.644 kb on + strandat 162.645 kb on - strandat 162.657 kb on + strandat 162.672 kb on - strandat 162.677 kb on - strandat 162.681 kb on + strandat 162.682 kb on - strandat 162.698 kb on + strandat 162.699 kb on - strandat 162.702 kb on + strandat 162.702 kb on + strandat 162.702 kb on + strandat 162.702 kb on + strandat 162.703 kb on - strandat 162.703 kb on - strandat 162.735 kb on + strandat 162.736 kb on - strandat 162.745 kb on + strandat 162.746 kb on - strandat 162.833 kb on + strandat 162.872 kb on - strandat 162.898 kb on - strand, within Echvi_0160at 163.009 kb on + strand, within Echvi_0160at 163.040 kb on - strand, within Echvi_0160at 163.063 kb on - strand, within Echvi_0160at 163.063 kb on - strand, within Echvi_0160at 163.129 kb on - strand, within Echvi_0160at 163.150 kb on + strand, within Echvi_0160at 163.276 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.322 kb on + strand, within Echvi_0160at 163.323 kb on - strand, within Echvi_0160at 163.323 kb on - strand, within Echvi_0160at 163.323 kb on - strand, within Echvi_0160at 163.323 kb on - strand, within Echvi_0160at 163.323 kb on - strand, within Echvi_0160at 163.360 kb on + strand, within Echvi_0160at 163.361 kb on - strand, within Echvi_0160at 163.363 kb on + strand, within Echvi_0160at 163.469 kb on - strand, within Echvi_0160at 163.501 kb on + strand, within Echvi_0160at 163.501 kb on + strand, within Echvi_0160at 163.501 kb on + strand, within Echvi_0160at 163.501 kb on + strand, within Echvi_0160at 163.501 kb on + strand, within Echvi_0160at 163.502 kb on - strand, within Echvi_0160at 163.502 kb on - strand, within Echvi_0160at 163.502 kb on - strand, within Echvi_0160at 163.548 kb on + strand, within Echvi_0160at 163.548 kb on + strand, within Echvi_0160at 163.549 kb on - strand, within Echvi_0160at 163.549 kb on - strand, within Echvi_0160at 163.558 kb on + strand, within Echvi_0160

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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160,599 - Echvi_0158 0.63 -1.5
160,611 + Echvi_0158 0.64 -2.0
160,611 + Echvi_0158 0.64 -1.3
160,611 + Echvi_0158 0.64 -1.5
160,611 + Echvi_0158 0.64 -2.1
160,612 - Echvi_0158 0.64 -0.8
160,620 + Echvi_0158 0.64 -1.4
160,620 + Echvi_0158 0.64 -2.7
160,620 + Echvi_0158 0.64 -1.9
160,620 + Echvi_0158 0.64 -0.5
160,673 + Echvi_0158 0.69 -1.0
160,673 + Echvi_0158 0.69 -1.9
160,674 - Echvi_0158 0.69 +0.6
160,754 + Echvi_0158 0.76 +0.3
160,754 + Echvi_0158 0.76 -2.4
160,821 - Echvi_0158 0.82 +1.5
160,877 + Echvi_0158 0.86 -0.8
160,878 - Echvi_0158 0.86 -0.2
160,959 + -2.2
160,960 - +0.5
160,960 - +1.6
161,031 + -0.7
161,032 - +2.9
161,042 - -0.3
161,053 + -1.4
161,243 + +0.7
161,255 + +0.0
161,255 + +0.3
161,255 + +0.5
161,255 + +1.5
161,319 + +0.0
161,320 - +2.0
161,438 - +0.3
161,466 + -0.3
161,466 + -0.2
161,504 + -0.8
161,504 + -0.3
161,504 + +1.4
161,508 + +0.1
161,565 + +0.9
161,568 + +0.3
161,569 - +0.5
161,569 - -0.3
161,569 - +1.3
161,569 - +1.6
161,601 + Echvi_0159 0.10 +1.3
161,601 + Echvi_0159 0.10 -1.6
161,601 + Echvi_0159 0.10 +0.1
161,601 + Echvi_0159 0.10 -1.0
161,601 + Echvi_0159 0.10 +0.6
161,602 - Echvi_0159 0.10 +0.3
161,607 + Echvi_0159 0.11 -1.4
161,607 + Echvi_0159 0.11 +1.0
161,607 + Echvi_0159 0.11 +0.2
161,608 - Echvi_0159 0.11 +0.2
161,608 - Echvi_0159 0.11 +0.5
161,609 + Echvi_0159 0.11 +0.1
161,610 - Echvi_0159 0.11 -0.8
161,610 - Echvi_0159 0.11 -0.3
161,685 + Echvi_0159 0.18 -0.3
161,780 + Echvi_0159 0.27 -0.2
161,781 - Echvi_0159 0.27 -2.0
161,781 - Echvi_0159 0.27 +0.9
161,830 - Echvi_0159 0.31 +0.1
161,834 + Echvi_0159 0.32 +1.5
161,834 + Echvi_0159 0.32 -0.5
161,835 - Echvi_0159 0.32 -0.4
161,954 + Echvi_0159 0.43 -0.6
161,954 + Echvi_0159 0.43 -1.4
161,954 + Echvi_0159 0.43 +0.5
161,955 - Echvi_0159 0.43 +1.6
161,955 - Echvi_0159 0.43 +0.1
161,955 - Echvi_0159 0.43 -0.0
161,955 - Echvi_0159 0.43 +0.7
162,015 + Echvi_0159 0.49 -1.1
162,015 - Echvi_0159 0.49 -0.6
162,016 - Echvi_0159 0.49 -0.4
162,016 - Echvi_0159 0.49 +0.0
162,017 + Echvi_0159 0.49 -0.6
162,017 + Echvi_0159 0.49 +0.0
162,018 - Echvi_0159 0.49 -0.1
162,192 + Echvi_0159 0.65 +0.7
162,192 + Echvi_0159 0.65 -1.3
162,246 + Echvi_0159 0.70 +0.5
162,255 + Echvi_0159 0.71 +0.0
162,261 + Echvi_0159 0.72 -1.8
162,261 + Echvi_0159 0.72 -0.9
162,261 + Echvi_0159 0.72 +0.5
162,261 + Echvi_0159 0.72 -1.9
162,317 + Echvi_0159 0.77 -2.4
162,317 + Echvi_0159 0.77 +0.0
162,317 + Echvi_0159 0.77 -0.8
162,318 - Echvi_0159 0.77 +1.9
162,321 + Echvi_0159 0.77 +0.7
162,321 + Echvi_0159 0.77 -0.5
162,321 + Echvi_0159 0.77 -0.8
162,321 + Echvi_0159 0.77 +0.4
162,323 + Echvi_0159 0.78 -0.9
162,324 - Echvi_0159 0.78 +1.3
162,341 + Echvi_0159 0.79 -2.3
162,341 + Echvi_0159 0.79 +0.6
162,431 + Echvi_0159 0.88 +0.1
162,459 - +1.2
162,459 - -0.9
162,468 + +0.1
162,469 - -0.2
162,482 - -1.4
162,482 - +1.1
162,482 - -0.2
162,482 - +0.0
162,531 - +0.9
162,531 - +0.8
162,570 + +1.0
162,570 + +0.6
162,595 - +0.8
162,595 - +0.0
162,595 - +1.0
162,600 + +0.0
162,604 + -0.8
162,604 + -0.0
162,605 - +1.7
162,626 - -2.2
162,644 + +0.0
162,645 - +1.5
162,657 + -1.1
162,672 - +0.5
162,677 - +0.7
162,681 + +0.0
162,682 - -1.4
162,698 + -1.0
162,699 - +2.0
162,702 + +0.2
162,702 + +0.5
162,702 + +0.7
162,702 + -1.4
162,703 - +0.0
162,703 - -0.2
162,735 + -1.0
162,736 - +1.6
162,745 + -0.1
162,746 - +1.5
162,833 + +0.6
162,872 - +0.8
162,898 - Echvi_0160 0.10 +0.2
163,009 + Echvi_0160 0.17 +1.5
163,040 - Echvi_0160 0.19 +1.3
163,063 - Echvi_0160 0.21 +0.7
163,063 - Echvi_0160 0.21 +0.9
163,129 - Echvi_0160 0.25 +1.7
163,150 + Echvi_0160 0.26 -0.2
163,276 + Echvi_0160 0.34 +0.0
163,322 + Echvi_0160 0.37 -0.4
163,322 + Echvi_0160 0.37 -0.2
163,322 + Echvi_0160 0.37 +0.5
163,322 + Echvi_0160 0.37 +0.0
163,322 + Echvi_0160 0.37 -1.0
163,322 + Echvi_0160 0.37 -0.9
163,322 + Echvi_0160 0.37 +1.0
163,322 + Echvi_0160 0.37 -0.2
163,323 - Echvi_0160 0.37 +1.5
163,323 - Echvi_0160 0.37 -0.5
163,323 - Echvi_0160 0.37 -0.3
163,323 - Echvi_0160 0.37 +0.6
163,323 - Echvi_0160 0.37 +0.5
163,360 + Echvi_0160 0.40 -1.1
163,361 - Echvi_0160 0.40 +0.4
163,363 + Echvi_0160 0.40 +0.2
163,469 - Echvi_0160 0.46 +0.4
163,501 + Echvi_0160 0.48 -0.0
163,501 + Echvi_0160 0.48 -0.3
163,501 + Echvi_0160 0.48 +0.5
163,501 + Echvi_0160 0.48 -0.8
163,501 + Echvi_0160 0.48 -0.8
163,502 - Echvi_0160 0.48 +0.0
163,502 - Echvi_0160 0.48 +0.9
163,502 - Echvi_0160 0.48 -0.2
163,548 + Echvi_0160 0.51 -0.5
163,548 + Echvi_0160 0.51 -0.1
163,549 - Echvi_0160 0.51 +0.2
163,549 - Echvi_0160 0.51 +0.2
163,558 + Echvi_0160 0.52 -0.2

Or see this region's nucleotide sequence