Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0098

Experiment: m.b. Carbenicillin 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0097 and Echvi_0098 are separated by 139 nucleotidesEchvi_0098 and Echvi_0099 are separated by 33 nucleotides Echvi_0097: Echvi_0097 - ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA, at 95,815 to 97,323 _0097 Echvi_0098: Echvi_0098 - D-tyrosyl-tRNA(Tyr) deacylase, at 97,463 to 97,915 _0098 Echvi_0099: Echvi_0099 - hypothetical protein, at 97,949 to 99,133 _0099 Position (kb) 97 98Strain fitness (log2 ratio) -2 -1 0 1 2 3at 96.492 kb on + strand, within Echvi_0097at 96.540 kb on + strand, within Echvi_0097at 96.571 kb on + strand, within Echvi_0097at 96.608 kb on - strand, within Echvi_0097at 96.648 kb on + strand, within Echvi_0097at 96.695 kb on - strand, within Echvi_0097at 96.744 kb on + strand, within Echvi_0097at 96.803 kb on - strand, within Echvi_0097at 97.040 kb on + strand, within Echvi_0097at 97.078 kb on - strand, within Echvi_0097at 97.150 kb on + strand, within Echvi_0097at 97.151 kb on - strand, within Echvi_0097at 97.210 kb on + strandat 97.266 kb on + strandat 97.266 kb on + strandat 97.267 kb on - strandat 97.267 kb on - strandat 97.267 kb on - strandat 97.278 kb on - strandat 97.278 kb on - strandat 97.309 kb on + strandat 97.309 kb on + strandat 97.309 kb on + strandat 97.309 kb on + strandat 97.309 kb on + strandat 97.311 kb on + strandat 97.312 kb on - strandat 97.351 kb on - strandat 97.362 kb on + strandat 97.363 kb on - strandat 97.363 kb on - strandat 97.426 kb on + strandat 97.426 kb on + strandat 97.460 kb on - strandat 97.588 kb on + strand, within Echvi_0098at 97.588 kb on + strand, within Echvi_0098at 97.859 kb on + strand, within Echvi_0098at 97.859 kb on + strand, within Echvi_0098at 97.860 kb on - strand, within Echvi_0098at 97.903 kb on + strandat 97.903 kb on + strandat 97.918 kb on + strandat 97.947 kb on - strandat 97.965 kb on + strandat 97.966 kb on - strandat 97.966 kb on - strandat 98.002 kb on + strandat 98.018 kb on - strandat 98.060 kb on - strandat 98.084 kb on + strand, within Echvi_0099at 98.096 kb on + strand, within Echvi_0099at 98.096 kb on + strand, within Echvi_0099at 98.097 kb on - strand, within Echvi_0099at 98.102 kb on + strand, within Echvi_0099at 98.139 kb on - strand, within Echvi_0099at 98.146 kb on + strand, within Echvi_0099at 98.147 kb on - strand, within Echvi_0099at 98.158 kb on - strand, within Echvi_0099at 98.374 kb on - strand, within Echvi_0099at 98.374 kb on - strand, within Echvi_0099at 98.387 kb on + strand, within Echvi_0099at 98.411 kb on + strand, within Echvi_0099at 98.412 kb on - strand, within Echvi_0099at 98.496 kb on + strand, within Echvi_0099at 98.536 kb on + strand, within Echvi_0099at 98.580 kb on + strand, within Echvi_0099at 98.580 kb on + strand, within Echvi_0099at 98.664 kb on - strand, within Echvi_0099at 98.772 kb on + strand, within Echvi_0099at 98.772 kb on + strand, within Echvi_0099at 98.772 kb on + strand, within Echvi_0099at 98.773 kb on - strand, within Echvi_0099at 98.783 kb on + strand, within Echvi_0099at 98.815 kb on + strand, within Echvi_0099at 98.815 kb on + strand, within Echvi_0099at 98.815 kb on + strand, within Echvi_0099at 98.816 kb on - strand, within Echvi_0099at 98.816 kb on - strand, within Echvi_0099at 98.816 kb on - strand, within Echvi_0099at 98.820 kb on - strand, within Echvi_0099

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml
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96,492 + Echvi_0097 0.45 +1.3
96,540 + Echvi_0097 0.48 -0.7
96,571 + Echvi_0097 0.50 -1.0
96,608 - Echvi_0097 0.53 -1.1
96,648 + Echvi_0097 0.55 -1.0
96,695 - Echvi_0097 0.58 -0.5
96,744 + Echvi_0097 0.62 -0.7
96,803 - Echvi_0097 0.65 +1.1
97,040 + Echvi_0097 0.81 -1.2
97,078 - Echvi_0097 0.84 -0.5
97,150 + Echvi_0097 0.88 +3.2
97,151 - Echvi_0097 0.89 -0.8
97,210 + -0.5
97,266 + -0.7
97,266 + -0.9
97,267 - +2.5
97,267 - -0.3
97,267 - +0.5
97,278 - +0.3
97,278 - -1.1
97,309 + +0.7
97,309 + +0.5
97,309 + -0.7
97,309 + -0.2
97,309 + -1.3
97,311 + -0.2
97,312 - -1.8
97,351 - +1.9
97,362 + +1.2
97,363 - +0.3
97,363 - -1.5
97,426 + -0.4
97,426 + -0.1
97,460 - +1.4
97,588 + Echvi_0098 0.28 -0.8
97,588 + Echvi_0098 0.28 -1.0
97,859 + Echvi_0098 0.87 +0.2
97,859 + Echvi_0098 0.87 +0.1
97,860 - Echvi_0098 0.88 -0.6
97,903 + +1.0
97,903 + -1.1
97,918 + +2.4
97,947 - -0.3
97,965 + -1.4
97,966 - +0.0
97,966 - -1.0
98,002 + -0.4
98,018 - -0.1
98,060 - -0.3
98,084 + Echvi_0099 0.11 +0.1
98,096 + Echvi_0099 0.12 -0.9
98,096 + Echvi_0099 0.12 -0.2
98,097 - Echvi_0099 0.12 +0.6
98,102 + Echvi_0099 0.13 +0.3
98,139 - Echvi_0099 0.16 +0.1
98,146 + Echvi_0099 0.17 -0.7
98,147 - Echvi_0099 0.17 +1.1
98,158 - Echvi_0099 0.18 +0.1
98,374 - Echvi_0099 0.36 +1.3
98,374 - Echvi_0099 0.36 -0.5
98,387 + Echvi_0099 0.37 -1.7
98,411 + Echvi_0099 0.39 -0.4
98,412 - Echvi_0099 0.39 +0.2
98,496 + Echvi_0099 0.46 -0.1
98,536 + Echvi_0099 0.50 +0.9
98,580 + Echvi_0099 0.53 -0.4
98,580 + Echvi_0099 0.53 +0.5
98,664 - Echvi_0099 0.60 -0.1
98,772 + Echvi_0099 0.69 +3.0
98,772 + Echvi_0099 0.69 +0.2
98,772 + Echvi_0099 0.69 +1.6
98,773 - Echvi_0099 0.70 +1.5
98,783 + Echvi_0099 0.70 +0.2
98,815 + Echvi_0099 0.73 -0.5
98,815 + Echvi_0099 0.73 +1.0
98,815 + Echvi_0099 0.73 -0.1
98,816 - Echvi_0099 0.73 +0.0
98,816 - Echvi_0099 0.73 +1.6
98,816 - Echvi_0099 0.73 +0.5
98,820 - Echvi_0099 0.74 -0.0

Or see this region's nucleotide sequence