Experiment: m.b. Carbenicillin 0.2 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0038 and Echvi_0039 are separated by 12 nucleotides Echvi_0039 and Echvi_0040 are separated by 80 nucleotides Echvi_0040 and Echvi_0041 overlap by 56 nucleotides Echvi_0041 and Echvi_0042 are separated by 123 nucleotides
Echvi_0038: Echvi_0038 - Putative regulator of cell autolysis, at 35,975 to 37,018
_0038
Echvi_0039: Echvi_0039 - Predicted membrane protein (DUF2154)., at 37,031 to 37,831
_0039
Echvi_0040: Echvi_0040 - hypothetical protein, at 37,912 to 38,079
_0040
Echvi_0041: Echvi_0041 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase, at 38,024 to 38,701
_0041
Echvi_0042: Echvi_0042 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase, at 38,825 to 39,874
_0042
Position (kb) 37
38
39 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 36.944 kb on + strand at 36.944 kb on + strand at 36.945 kb on - strand at 37.116 kb on + strand, within Echvi_0039 at 37.117 kb on - strand, within Echvi_0039 at 37.117 kb on - strand, within Echvi_0039 at 37.117 kb on - strand, within Echvi_0039 at 37.147 kb on + strand, within Echvi_0039 at 37.148 kb on - strand, within Echvi_0039 at 37.257 kb on - strand, within Echvi_0039 at 37.381 kb on + strand, within Echvi_0039 at 37.566 kb on + strand, within Echvi_0039 at 37.588 kb on + strand, within Echvi_0039 at 37.589 kb on - strand, within Echvi_0039 at 37.589 kb on - strand, within Echvi_0039 at 37.678 kb on + strand, within Echvi_0039 at 37.715 kb on + strand, within Echvi_0039 at 37.775 kb on + strand at 37.776 kb on - strand at 37.776 kb on - strand at 37.778 kb on + strand at 37.779 kb on - strand at 37.779 kb on - strand at 37.840 kb on + strand at 37.892 kb on + strand at 37.895 kb on - strand at 38.702 kb on - strand at 38.741 kb on + strand at 38.764 kb on + strand at 38.765 kb on - strand at 38.784 kb on + strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.785 kb on - strand at 38.786 kb on + strand at 38.786 kb on + strand at 38.786 kb on + strand at 38.787 kb on - strand at 38.787 kb on - strand at 38.789 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.2 mg/ml remove 36,944 + -0.3 36,944 + -0.3 36,945 - -0.4 37,116 + Echvi_0039 0.11 -1.7 37,117 - Echvi_0039 0.11 -1.4 37,117 - Echvi_0039 0.11 -0.0 37,117 - Echvi_0039 0.11 -0.9 37,147 + Echvi_0039 0.14 -1.8 37,148 - Echvi_0039 0.15 -0.8 37,257 - Echvi_0039 0.28 +0.0 37,381 + Echvi_0039 0.44 +0.9 37,566 + Echvi_0039 0.67 -0.8 37,588 + Echvi_0039 0.70 -0.8 37,589 - Echvi_0039 0.70 -0.8 37,589 - Echvi_0039 0.70 -0.6 37,678 + Echvi_0039 0.81 -1.6 37,715 + Echvi_0039 0.85 +0.2 37,775 + -0.3 37,776 - -0.2 37,776 - -0.6 37,778 + +0.5 37,779 - +0.2 37,779 - +0.3 37,840 + -0.5 37,892 + +0.6 37,895 - -0.0 38,702 - -0.2 38,741 + +0.7 38,764 + -1.7 38,765 - +0.8 38,784 + -0.1 38,785 - +1.6 38,785 - +2.4 38,785 - +0.2 38,785 - +1.5 38,785 - -0.4 38,786 + -0.4 38,786 + +0.6 38,786 + -0.6 38,787 - -0.2 38,787 - +3.0 38,789 - +1.2
Or see this region's nucleotide sequence