Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3722 and Atu3723 are separated by 86 nucleotides Atu3723 and Atu3724 are separated by 27 nucleotides Atu3724 and Atu3725 are separated by 246 nucleotides
Atu3722: Atu3722 - Holliday junction DNA helicase RuvB, at 802,331 to 803,371
Atu3722
Atu3723: Atu3723 - Holliday junction DNA helicase RuvA, at 803,458 to 804,075
Atu3723
Atu3724: Atu3724 - Holliday junction resolvase, at 804,103 to 804,615
Atu3724
Atu3725: Atu3725 - methyl-accepting chemotaxis protein, at 804,862 to 807,171
Atu3725
Position (kb) 804
805 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 803.311 kb on + strand at 803.622 kb on - strand, within Atu3723 at 803.908 kb on + strand, within Atu3723 at 803.937 kb on + strand, within Atu3723 at 804.118 kb on - strand at 804.634 kb on + strand at 804.715 kb on - strand at 804.728 kb on + strand at 804.736 kb on - strand at 804.783 kb on - strand at 804.783 kb on - strand at 804.843 kb on + strand at 804.963 kb on - strand at 804.968 kb on - strand at 804.974 kb on + strand at 805.031 kb on + strand at 805.033 kb on + strand at 805.061 kb on - strand at 805.091 kb on - strand at 805.141 kb on - strand, within Atu3725 at 805.143 kb on - strand, within Atu3725 at 805.185 kb on - strand, within Atu3725 at 805.196 kb on - strand, within Atu3725 at 805.240 kb on - strand, within Atu3725 at 805.266 kb on + strand, within Atu3725 at 805.274 kb on - strand, within Atu3725 at 805.303 kb on + strand, within Atu3725 at 805.313 kb on - strand, within Atu3725 at 805.581 kb on - strand, within Atu3725
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 803,311 + -0.1 803,622 - Atu3723 0.27 -2.4 803,908 + Atu3723 0.73 +0.1 803,937 + Atu3723 0.78 -0.4 804,118 - +0.7 804,634 + -0.6 804,715 - -0.3 804,728 + +0.1 804,736 - -0.7 804,783 - -0.4 804,783 - -0.4 804,843 + +0.4 804,963 - -0.1 804,968 - +3.2 804,974 + -0.3 805,031 + -0.1 805,033 + -2.3 805,061 - -0.5 805,091 - -0.3 805,141 - Atu3725 0.12 -0.8 805,143 - Atu3725 0.12 -0.5 805,185 - Atu3725 0.14 +0.4 805,196 - Atu3725 0.14 -0.3 805,240 - Atu3725 0.16 -0.1 805,266 + Atu3725 0.17 -2.4 805,274 - Atu3725 0.18 +0.1 805,303 + Atu3725 0.19 +0.5 805,313 - Atu3725 0.20 -0.9 805,581 - Atu3725 0.31 +0.5
Or see this region's nucleotide sequence