Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3719 and Atu3720 overlap by 1 nucleotides Atu3720 and Atu3721 are separated by 35 nucleotides Atu3721 and Atu3722 are separated by 52 nucleotides Atu3722 and Atu3723 are separated by 86 nucleotides Atu3723 and Atu3724 are separated by 27 nucleotides
Atu3719: Atu3719 - MutT/nudix family protein, at 800,919 to 801,446
Atu3719
Atu3720: Atu3720 - hypothetical protein, at 801,446 to 802,024
Atu3720
Atu3721: Atu3721 - hypothetical protein, at 802,060 to 802,278
Atu3721
Atu3722: Atu3722 - Holliday junction DNA helicase RuvB, at 802,331 to 803,371
Atu3722
Atu3723: Atu3723 - Holliday junction DNA helicase RuvA, at 803,458 to 804,075
Atu3723
Atu3724: Atu3724 - Holliday junction resolvase, at 804,103 to 804,615
Atu3724
Position (kb) 802
803
804 Strain fitness (log2 ratio) -2
-1
0
1 at 801.443 kb on + strand at 801.451 kb on - strand at 801.456 kb on - strand at 801.521 kb on - strand, within Atu3720 at 801.581 kb on - strand, within Atu3720 at 801.652 kb on + strand, within Atu3720 at 801.665 kb on - strand, within Atu3720 at 801.681 kb on + strand, within Atu3720 at 801.728 kb on + strand, within Atu3720 at 801.743 kb on + strand, within Atu3720 at 801.747 kb on + strand, within Atu3720 at 801.764 kb on + strand, within Atu3720 at 801.861 kb on + strand, within Atu3720 at 801.861 kb on + strand, within Atu3720 at 801.861 kb on + strand, within Atu3720 at 801.861 kb on + strand, within Atu3720 at 801.869 kb on - strand, within Atu3720 at 801.869 kb on - strand, within Atu3720 at 801.877 kb on + strand, within Atu3720 at 801.877 kb on + strand, within Atu3720 at 801.882 kb on + strand, within Atu3720 at 801.951 kb on - strand, within Atu3720 at 801.956 kb on - strand, within Atu3720 at 802.003 kb on + strand at 802.022 kb on - strand at 802.106 kb on + strand, within Atu3721 at 802.129 kb on + strand, within Atu3721 at 802.290 kb on + strand at 802.358 kb on - strand at 802.764 kb on + strand, within Atu3722 at 803.311 kb on + strand at 803.622 kb on - strand, within Atu3723 at 803.908 kb on + strand, within Atu3723 at 803.937 kb on + strand, within Atu3723 at 804.118 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 801,443 + -0.6 801,451 - -0.1 801,456 - -0.4 801,521 - Atu3720 0.13 +0.1 801,581 - Atu3720 0.23 -0.2 801,652 + Atu3720 0.36 -0.0 801,665 - Atu3720 0.38 -0.6 801,681 + Atu3720 0.41 -0.0 801,728 + Atu3720 0.49 -0.3 801,743 + Atu3720 0.51 -0.7 801,747 + Atu3720 0.52 -0.0 801,764 + Atu3720 0.55 +0.4 801,861 + Atu3720 0.72 -0.2 801,861 + Atu3720 0.72 -1.3 801,861 + Atu3720 0.72 -0.1 801,861 + Atu3720 0.72 -0.4 801,869 - Atu3720 0.73 -0.1 801,869 - Atu3720 0.73 -0.2 801,877 + Atu3720 0.74 -0.2 801,877 + Atu3720 0.74 +0.3 801,882 + Atu3720 0.75 -0.1 801,951 - Atu3720 0.87 -1.4 801,956 - Atu3720 0.88 -0.5 802,003 + -0.2 802,022 - -0.6 802,106 + Atu3721 0.21 -0.1 802,129 + Atu3721 0.32 +0.1 802,290 + -0.1 802,358 - +0.6 802,764 + Atu3722 0.42 -0.5 803,311 + -0.1 803,622 - Atu3723 0.27 -2.4 803,908 + Atu3723 0.73 +0.1 803,937 + Atu3723 0.78 -0.4 804,118 - +0.7
Or see this region's nucleotide sequence