Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3683 and Atu3684 are separated by 4 nucleotides Atu3684 and Atu3685 are separated by 14 nucleotides Atu3685 and Atu3686 are separated by 27 nucleotides
Atu3683: Atu3683 - peptide synthetase, siderophore biosynthesis protein, at 749,718 to 757,409
Atu3683
Atu3684: Atu3684 - siderophore biosynthesis protein, at 757,414 to 759,081
Atu3684
Atu3685: Atu3685 - thioesterase, siderophore biosynthesis protein, at 759,096 to 759,842
Atu3685
Atu3686: Atu3686 - siderophore biosynthesis protein, at 759,870 to 760,763
Atu3686
Position (kb) 757
758
759
760 Strain fitness (log2 ratio) -2
-1
0
1 at 756.506 kb on + strand, within Atu3683 at 756.529 kb on - strand, within Atu3683 at 756.620 kb on + strand, within Atu3683 at 756.687 kb on - strand at 756.719 kb on + strand at 756.727 kb on - strand at 756.762 kb on + strand at 756.843 kb on + strand at 756.844 kb on + strand at 756.844 kb on + strand at 756.852 kb on - strand at 756.854 kb on - strand at 756.884 kb on + strand at 756.907 kb on - strand at 756.944 kb on - strand at 757.033 kb on - strand at 757.085 kb on + strand at 757.093 kb on - strand at 757.138 kb on - strand at 757.178 kb on + strand at 757.198 kb on - strand at 757.226 kb on + strand at 757.234 kb on - strand at 757.337 kb on + strand at 757.343 kb on - strand at 757.394 kb on + strand at 757.402 kb on + strand at 757.469 kb on - strand at 757.601 kb on + strand, within Atu3684 at 757.606 kb on + strand, within Atu3684 at 757.621 kb on + strand, within Atu3684 at 757.629 kb on - strand, within Atu3684 at 757.633 kb on + strand, within Atu3684 at 757.633 kb on + strand, within Atu3684 at 757.641 kb on - strand, within Atu3684 at 757.680 kb on - strand, within Atu3684 at 757.717 kb on + strand, within Atu3684 at 757.756 kb on + strand, within Atu3684 at 757.924 kb on + strand, within Atu3684 at 757.940 kb on + strand, within Atu3684 at 758.150 kb on + strand, within Atu3684 at 758.168 kb on - strand, within Atu3684 at 758.177 kb on - strand, within Atu3684 at 758.283 kb on + strand, within Atu3684 at 758.378 kb on + strand, within Atu3684 at 758.425 kb on - strand, within Atu3684 at 758.475 kb on - strand, within Atu3684 at 758.503 kb on + strand, within Atu3684 at 758.565 kb on - strand, within Atu3684 at 758.616 kb on + strand, within Atu3684 at 758.624 kb on - strand, within Atu3684 at 758.626 kb on - strand, within Atu3684 at 758.726 kb on - strand, within Atu3684 at 758.738 kb on - strand, within Atu3684 at 758.766 kb on + strand, within Atu3684 at 758.774 kb on - strand, within Atu3684 at 758.774 kb on - strand, within Atu3684 at 758.799 kb on - strand, within Atu3684 at 758.872 kb on + strand, within Atu3684 at 758.877 kb on + strand, within Atu3684 at 758.877 kb on + strand, within Atu3684 at 759.260 kb on - strand, within Atu3685 at 759.260 kb on - strand, within Atu3685 at 759.267 kb on - strand, within Atu3685 at 759.306 kb on + strand, within Atu3685 at 759.307 kb on + strand, within Atu3685 at 759.315 kb on - strand, within Atu3685 at 759.448 kb on + strand, within Atu3685 at 759.456 kb on - strand, within Atu3685 at 759.536 kb on + strand, within Atu3685 at 759.638 kb on - strand, within Atu3685 at 759.649 kb on + strand, within Atu3685 at 759.724 kb on + strand, within Atu3685 at 759.758 kb on - strand, within Atu3685 at 759.807 kb on + strand at 759.812 kb on + strand at 759.812 kb on + strand at 759.822 kb on + strand at 759.886 kb on + strand at 759.948 kb on - strand at 759.966 kb on - strand, within Atu3686
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 756,506 + Atu3683 0.88 -0.5 756,529 - Atu3683 0.89 +0.1 756,620 + Atu3683 0.90 -0.6 756,687 - +0.5 756,719 + -0.2 756,727 - +0.1 756,762 + +0.6 756,843 + -0.3 756,844 + -0.1 756,844 + +0.9 756,852 - -0.5 756,854 - -0.2 756,884 + -0.0 756,907 - +0.3 756,944 - -1.0 757,033 - -0.4 757,085 + -0.2 757,093 - +0.0 757,138 - -0.7 757,178 + -0.1 757,198 - +1.3 757,226 + -0.0 757,234 - -0.3 757,337 + -0.2 757,343 - -0.8 757,394 + -0.2 757,402 + -0.2 757,469 - -0.5 757,601 + Atu3684 0.11 +0.0 757,606 + Atu3684 0.12 +1.1 757,621 + Atu3684 0.12 -0.1 757,629 - Atu3684 0.13 -0.5 757,633 + Atu3684 0.13 -0.4 757,633 + Atu3684 0.13 +0.7 757,641 - Atu3684 0.14 -0.3 757,680 - Atu3684 0.16 -1.2 757,717 + Atu3684 0.18 -0.8 757,756 + Atu3684 0.21 +0.3 757,924 + Atu3684 0.31 +0.4 757,940 + Atu3684 0.32 -0.6 758,150 + Atu3684 0.44 -0.2 758,168 - Atu3684 0.45 +0.2 758,177 - Atu3684 0.46 +0.0 758,283 + Atu3684 0.52 -1.0 758,378 + Atu3684 0.58 +0.8 758,425 - Atu3684 0.61 -0.5 758,475 - Atu3684 0.64 -1.0 758,503 + Atu3684 0.65 -1.0 758,565 - Atu3684 0.69 -0.3 758,616 + Atu3684 0.72 +1.2 758,624 - Atu3684 0.73 -0.9 758,626 - Atu3684 0.73 -0.0 758,726 - Atu3684 0.79 -0.6 758,738 - Atu3684 0.79 +0.2 758,766 + Atu3684 0.81 +0.1 758,774 - Atu3684 0.82 -1.2 758,774 - Atu3684 0.82 +0.0 758,799 - Atu3684 0.83 +0.2 758,872 + Atu3684 0.87 -1.2 758,877 + Atu3684 0.88 -0.9 758,877 + Atu3684 0.88 -0.5 759,260 - Atu3685 0.22 -0.2 759,260 - Atu3685 0.22 -0.0 759,267 - Atu3685 0.23 -0.2 759,306 + Atu3685 0.28 -0.4 759,307 + Atu3685 0.28 -1.8 759,315 - Atu3685 0.29 -0.0 759,448 + Atu3685 0.47 -0.5 759,456 - Atu3685 0.48 -0.7 759,536 + Atu3685 0.59 -0.4 759,638 - Atu3685 0.73 -0.1 759,649 + Atu3685 0.74 -0.6 759,724 + Atu3685 0.84 -0.4 759,758 - Atu3685 0.89 +0.0 759,807 + +0.1 759,812 + +0.0 759,812 + +0.1 759,822 + -0.8 759,886 + -0.6 759,948 - +0.4 759,966 - Atu3686 0.11 -0.3
Or see this region's nucleotide sequence