Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0094 and Atu0095 are separated by 59 nucleotides Atu0095 and Atu0096 are separated by 24 nucleotides Atu0096 and Atu0097 are separated by 265 nucleotides Atu0097 and Atu0098 overlap by 1 nucleotides
Atu0094: Atu0094 - hypothetical protein, at 98,472 to 99,086
Atu0094
Atu0095: Atu0095 - hypothetical protein, at 99,146 to 99,469
Atu0095
Atu0096: Atu0096 - DNA polymerase III, tau subunit, at 99,494 to 101,368
Atu0096
Atu0097: Atu0097 - hypothetical protein, at 101,634 to 102,038
Atu0097
Atu0098: Atu0098 - mutT/nudix family protein, at 102,038 to 103,000
Atu0098
Position (kb) 99
100
101
102 Strain fitness (log2 ratio) -1
0
1
2 at 98.616 kb on + strand, within Atu0094 at 98.616 kb on + strand, within Atu0094 at 98.624 kb on - strand, within Atu0094 at 98.653 kb on + strand, within Atu0094 at 98.682 kb on + strand, within Atu0094 at 98.690 kb on - strand, within Atu0094 at 98.770 kb on + strand, within Atu0094 at 98.786 kb on - strand, within Atu0094 at 98.847 kb on - strand, within Atu0094 at 98.993 kb on - strand, within Atu0094 at 99.014 kb on + strand, within Atu0094 at 99.080 kb on + strand at 99.080 kb on + strand at 99.088 kb on - strand at 99.095 kb on - strand at 99.105 kb on - strand at 99.120 kb on + strand at 99.242 kb on + strand, within Atu0095 at 99.264 kb on + strand, within Atu0095 at 99.296 kb on - strand, within Atu0095 at 99.425 kb on - strand, within Atu0095 at 99.432 kb on + strand, within Atu0095 at 99.438 kb on + strand at 99.478 kb on + strand at 99.578 kb on - strand at 101.627 kb on - strand at 101.641 kb on + strand at 101.735 kb on - strand, within Atu0097 at 101.782 kb on + strand, within Atu0097 at 101.790 kb on - strand, within Atu0097 at 101.874 kb on - strand, within Atu0097 at 101.942 kb on - strand, within Atu0097 at 101.989 kb on - strand, within Atu0097 at 101.989 kb on - strand, within Atu0097 at 102.156 kb on - strand, within Atu0098 at 102.161 kb on + strand, within Atu0098 at 102.161 kb on + strand, within Atu0098 at 102.162 kb on + strand, within Atu0098 at 102.247 kb on + strand, within Atu0098 at 102.255 kb on + strand, within Atu0098 at 102.255 kb on + strand, within Atu0098
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 98,616 + Atu0094 0.23 +0.2 98,616 + Atu0094 0.23 -0.2 98,624 - Atu0094 0.25 -0.2 98,653 + Atu0094 0.29 +0.1 98,682 + Atu0094 0.34 -0.1 98,690 - Atu0094 0.35 +0.7 98,770 + Atu0094 0.48 +0.6 98,786 - Atu0094 0.51 +1.8 98,847 - Atu0094 0.61 -0.4 98,993 - Atu0094 0.85 -0.8 99,014 + Atu0094 0.88 -0.2 99,080 + -1.0 99,080 + +0.8 99,088 - -0.4 99,095 - +0.3 99,105 - -0.5 99,120 + +0.4 99,242 + Atu0095 0.30 +0.4 99,264 + Atu0095 0.36 -0.3 99,296 - Atu0095 0.46 +0.2 99,425 - Atu0095 0.86 -0.6 99,432 + Atu0095 0.88 -0.2 99,438 + -0.2 99,478 + -0.1 99,578 - +0.1 101,627 - +0.8 101,641 + +0.1 101,735 - Atu0097 0.25 -0.1 101,782 + Atu0097 0.37 +0.6 101,790 - Atu0097 0.39 -0.1 101,874 - Atu0097 0.59 -0.1 101,942 - Atu0097 0.76 -0.0 101,989 - Atu0097 0.88 +0.1 101,989 - Atu0097 0.88 -0.2 102,156 - Atu0098 0.12 -1.0 102,161 + Atu0098 0.13 -1.0 102,161 + Atu0098 0.13 +0.2 102,162 + Atu0098 0.13 +0.8 102,247 + Atu0098 0.22 +1.4 102,255 + Atu0098 0.23 +0.1 102,255 + Atu0098 0.23 +0.4
Or see this region's nucleotide sequence