Experiment: L-Rhamnose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0003 and Atu0004 overlap by 1 nucleotides Atu0004 and Atu0005 are separated by 20 nucleotides Atu0005 and Atu0006 are separated by 98 nucleotides Atu0006 and Atu0007 are separated by 103 nucleotides
Atu0003: Atu0003 - shikimate 5-dehydrogenase, at 1,648 to 2,508
Atu0003
Atu0004: Atu0004 - dephospho-CoA kinase, at 2,508 to 3,089
Atu0004
Atu0005: Atu0005 - DNA polymerase III, epsilon chain, at 3,110 to 3,808
Atu0005
Atu0006: Atu0006 - protein-export protein SECB, at 3,907 to 4,389
Atu0006
Atu0007: Atu0007 - hypothetical protein, at 4,493 to 5,029
Atu0007
Position (kb) 3
4 Strain fitness (log2 ratio) -1
0
1
2 at 3.844 kb on + strand at 3.928 kb on - strand at 3.928 kb on - strand at 4.192 kb on + strand, within Atu0006 at 4.284 kb on - strand, within Atu0006 at 4.491 kb on + strand at 4.516 kb on + strand at 4.516 kb on + strand at 4.524 kb on - strand at 4.539 kb on - strand at 4.543 kb on + strand at 4.544 kb on + strand at 4.551 kb on - strand, within Atu0007 at 4.557 kb on + strand, within Atu0007 at 4.580 kb on + strand, within Atu0007 at 4.588 kb on + strand, within Atu0007 at 4.605 kb on + strand, within Atu0007 at 4.647 kb on + strand, within Atu0007 at 4.655 kb on - strand, within Atu0007 at 4.687 kb on + strand, within Atu0007 at 4.687 kb on + strand, within Atu0007
Per-strain Table
Position Strand Gene LocusTag Fraction L-Rhamnose (C) remove 3,844 + +2.3 3,928 - -0.4 3,928 - -0.5 4,192 + Atu0006 0.59 -0.5 4,284 - Atu0006 0.78 +2.4 4,491 + +0.1 4,516 + -0.1 4,516 + -0.2 4,524 - +0.0 4,539 - -0.1 4,543 + +0.0 4,544 + -0.7 4,551 - Atu0007 0.11 -0.3 4,557 + Atu0007 0.12 +1.8 4,580 + Atu0007 0.16 +0.2 4,588 + Atu0007 0.18 -0.0 4,605 + Atu0007 0.21 +0.6 4,647 + Atu0007 0.29 +0.2 4,655 - Atu0007 0.30 +0.3 4,687 + Atu0007 0.36 -0.4 4,687 + Atu0007 0.36 +0.8
Or see this region's nucleotide sequence