Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS03685 and RPSI07_RS03690 overlap by 4 nucleotides RPSI07_RS03690 and RPSI07_RS03695 are separated by 11 nucleotides RPSI07_RS03695 and RPSI07_RS03700 are separated by 134 nucleotides
RPSI07_RS03685: RPSI07_RS03685 - EscN/YscN/HrcN family type III secretion system ATPase, at 995,324 to 996,643
_RS03685
RPSI07_RS03690: RPSI07_RS03690 - type III secretion protein HrpB7, at 996,640 to 997,140
_RS03690
RPSI07_RS03695: RPSI07_RS03695 - EscT/YscT/HrcT family type III secretion system export apparatus protein, at 997,152 to 998,000
_RS03695
RPSI07_RS03700: RPSI07_RS03700 - AraC family transcriptional regulator, at 998,135 to 999,568
_RS03700
Position (kb) 997
998
999 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 996.251 kb on + strand, within RPSI07_RS03685 at 996.252 kb on - strand, within RPSI07_RS03685 at 996.467 kb on + strand, within RPSI07_RS03685 at 996.467 kb on + strand, within RPSI07_RS03685 at 996.468 kb on - strand, within RPSI07_RS03685 at 996.468 kb on - strand, within RPSI07_RS03685 at 996.468 kb on - strand, within RPSI07_RS03685 at 996.468 kb on - strand, within RPSI07_RS03685 at 996.468 kb on - strand, within RPSI07_RS03685 at 996.503 kb on + strand, within RPSI07_RS03685 at 996.504 kb on - strand, within RPSI07_RS03685 at 996.504 kb on - strand, within RPSI07_RS03685 at 996.581 kb on - strand at 996.581 kb on - strand at 996.868 kb on + strand, within RPSI07_RS03690 at 996.869 kb on - strand, within RPSI07_RS03690 at 996.869 kb on - strand, within RPSI07_RS03690 at 996.869 kb on - strand, within RPSI07_RS03690 at 996.877 kb on + strand, within RPSI07_RS03690 at 996.877 kb on + strand, within RPSI07_RS03690 at 996.878 kb on - strand, within RPSI07_RS03690 at 996.878 kb on - strand, within RPSI07_RS03690 at 997.124 kb on - strand at 997.166 kb on + strand at 997.167 kb on - strand at 997.167 kb on - strand at 997.167 kb on - strand at 997.320 kb on + strand, within RPSI07_RS03695 at 997.321 kb on - strand, within RPSI07_RS03695 at 997.321 kb on - strand, within RPSI07_RS03695 at 997.321 kb on - strand, within RPSI07_RS03695 at 997.321 kb on - strand, within RPSI07_RS03695 at 997.594 kb on - strand, within RPSI07_RS03695 at 997.594 kb on - strand, within RPSI07_RS03695 at 997.594 kb on - strand, within RPSI07_RS03695 at 997.913 kb on + strand, within RPSI07_RS03695 at 997.914 kb on - strand, within RPSI07_RS03695 at 997.914 kb on - strand, within RPSI07_RS03695 at 997.924 kb on - strand at 997.924 kb on - strand at 998.036 kb on + strand at 998.061 kb on - strand at 998.150 kb on + strand at 998.151 kb on - strand at 998.151 kb on - strand at 998.151 kb on - strand at 998.151 kb on - strand at 998.151 kb on - strand at 998.285 kb on + strand, within RPSI07_RS03700 at 998.285 kb on + strand, within RPSI07_RS03700 at 998.285 kb on + strand, within RPSI07_RS03700 at 998.285 kb on + strand, within RPSI07_RS03700 at 998.285 kb on + strand, within RPSI07_RS03700 at 998.286 kb on - strand, within RPSI07_RS03700 at 998.450 kb on + strand, within RPSI07_RS03700 at 998.451 kb on - strand, within RPSI07_RS03700 at 998.657 kb on + strand, within RPSI07_RS03700 at 998.658 kb on - strand, within RPSI07_RS03700 at 998.834 kb on + strand, within RPSI07_RS03700 at 998.834 kb on + strand, within RPSI07_RS03700 at 998.835 kb on - strand, within RPSI07_RS03700 at 998.835 kb on - strand, within RPSI07_RS03700 at 998.984 kb on + strand, within RPSI07_RS03700 at 998.984 kb on + strand, within RPSI07_RS03700 at 998.985 kb on - strand, within RPSI07_RS03700
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 996,251 + RPSI07_RS03685 0.70 +1.9 996,252 - RPSI07_RS03685 0.70 -1.0 996,467 + RPSI07_RS03685 0.87 -1.5 996,467 + RPSI07_RS03685 0.87 -0.8 996,468 - RPSI07_RS03685 0.87 -0.8 996,468 - RPSI07_RS03685 0.87 -1.0 996,468 - RPSI07_RS03685 0.87 +0.4 996,468 - RPSI07_RS03685 0.87 -1.2 996,468 - RPSI07_RS03685 0.87 +1.5 996,503 + RPSI07_RS03685 0.89 -0.6 996,504 - RPSI07_RS03685 0.89 +0.1 996,504 - RPSI07_RS03685 0.89 -1.8 996,581 - +0.6 996,581 - +0.7 996,868 + RPSI07_RS03690 0.46 -0.4 996,869 - RPSI07_RS03690 0.46 -1.2 996,869 - RPSI07_RS03690 0.46 -0.7 996,869 - RPSI07_RS03690 0.46 -0.5 996,877 + RPSI07_RS03690 0.47 -0.4 996,877 + RPSI07_RS03690 0.47 +0.5 996,878 - RPSI07_RS03690 0.48 +1.1 996,878 - RPSI07_RS03690 0.48 +1.2 997,124 - -0.1 997,166 + -0.4 997,167 - -0.9 997,167 - -1.7 997,167 - -0.4 997,320 + RPSI07_RS03695 0.20 -0.3 997,321 - RPSI07_RS03695 0.20 -0.2 997,321 - RPSI07_RS03695 0.20 -1.2 997,321 - RPSI07_RS03695 0.20 -1.0 997,321 - RPSI07_RS03695 0.20 +1.7 997,594 - RPSI07_RS03695 0.52 -2.3 997,594 - RPSI07_RS03695 0.52 +0.1 997,594 - RPSI07_RS03695 0.52 +1.3 997,913 + RPSI07_RS03695 0.90 -0.6 997,914 - RPSI07_RS03695 0.90 +0.2 997,914 - RPSI07_RS03695 0.90 +1.6 997,924 - +0.9 997,924 - +0.2 998,036 + +3.7 998,061 - +1.0 998,150 + +1.3 998,151 - -0.3 998,151 - +2.9 998,151 - +2.1 998,151 - +1.4 998,151 - +1.8 998,285 + RPSI07_RS03700 0.10 +0.5 998,285 + RPSI07_RS03700 0.10 +1.4 998,285 + RPSI07_RS03700 0.10 +0.8 998,285 + RPSI07_RS03700 0.10 +1.5 998,285 + RPSI07_RS03700 0.10 -0.6 998,286 - RPSI07_RS03700 0.11 +0.8 998,450 + RPSI07_RS03700 0.22 +1.4 998,451 - RPSI07_RS03700 0.22 +1.7 998,657 + RPSI07_RS03700 0.36 +0.7 998,658 - RPSI07_RS03700 0.36 +1.7 998,834 + RPSI07_RS03700 0.49 +0.8 998,834 + RPSI07_RS03700 0.49 +1.8 998,835 - RPSI07_RS03700 0.49 +1.5 998,835 - RPSI07_RS03700 0.49 +0.4 998,984 + RPSI07_RS03700 0.59 +1.9 998,984 + RPSI07_RS03700 0.59 +1.7 998,985 - RPSI07_RS03700 0.59 +0.8
Or see this region's nucleotide sequence