Experiment: Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RPSI07_RS02590 and RPSI07_RS02595 are separated by 273 nucleotides RPSI07_RS02595 and RPSI07_RS02600 are separated by 178 nucleotides
RPSI07_RS02590: RPSI07_RS02590 - EamA/RhaT family transporter, at 737,089 to 737,985
_RS02590
RPSI07_RS02595: RPSI07_RS02595 - AraC family transcriptional regulator, at 738,259 to 739,083
_RS02595
RPSI07_RS02600: RPSI07_RS02600 - acyl-CoA dehydrogenase, at 739,262 to 740,419
_RS02600
Position (kb) 738
739
740 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 737.336 kb on + strand, within RPSI07_RS02590 at 737.686 kb on + strand, within RPSI07_RS02590 at 737.686 kb on + strand, within RPSI07_RS02590 at 737.686 kb on + strand, within RPSI07_RS02590 at 737.686 kb on + strand, within RPSI07_RS02590 at 737.686 kb on + strand, within RPSI07_RS02590 at 737.711 kb on + strand, within RPSI07_RS02590 at 737.711 kb on + strand, within RPSI07_RS02590 at 737.711 kb on + strand, within RPSI07_RS02590 at 737.712 kb on - strand, within RPSI07_RS02590 at 737.712 kb on - strand, within RPSI07_RS02590 at 737.712 kb on - strand, within RPSI07_RS02590 at 737.712 kb on - strand, within RPSI07_RS02590 at 737.739 kb on + strand, within RPSI07_RS02590 at 737.739 kb on + strand, within RPSI07_RS02590 at 737.739 kb on + strand, within RPSI07_RS02590 at 737.739 kb on + strand, within RPSI07_RS02590 at 737.739 kb on + strand, within RPSI07_RS02590 at 737.739 kb on + strand, within RPSI07_RS02590 at 737.739 kb on - strand, within RPSI07_RS02590 at 737.740 kb on - strand, within RPSI07_RS02590 at 737.740 kb on - strand, within RPSI07_RS02590 at 737.740 kb on - strand, within RPSI07_RS02590 at 737.740 kb on - strand, within RPSI07_RS02590 at 737.963 kb on + strand at 737.964 kb on - strand at 737.997 kb on + strand at 737.997 kb on + strand at 737.998 kb on - strand at 737.998 kb on - strand at 737.998 kb on - strand at 737.998 kb on - strand at 738.019 kb on - strand at 738.036 kb on + strand at 738.036 kb on + strand at 738.036 kb on + strand at 738.036 kb on + strand at 738.036 kb on + strand at 738.037 kb on - strand at 738.037 kb on - strand at 738.037 kb on - strand at 738.037 kb on - strand at 738.047 kb on - strand at 738.056 kb on - strand at 738.056 kb on - strand at 738.151 kb on + strand at 738.151 kb on + strand at 738.152 kb on - strand at 738.152 kb on - strand at 738.212 kb on - strand at 738.286 kb on + strand at 738.317 kb on + strand at 738.317 kb on + strand at 738.317 kb on + strand at 738.317 kb on + strand at 738.317 kb on + strand at 738.317 kb on + strand at 738.317 kb on + strand at 738.318 kb on - strand at 738.318 kb on - strand at 738.318 kb on - strand at 738.318 kb on - strand at 738.318 kb on - strand at 738.526 kb on + strand, within RPSI07_RS02595 at 738.526 kb on + strand, within RPSI07_RS02595 at 738.527 kb on - strand, within RPSI07_RS02595 at 738.527 kb on - strand, within RPSI07_RS02595 at 738.573 kb on + strand, within RPSI07_RS02595 at 738.573 kb on + strand, within RPSI07_RS02595 at 738.573 kb on + strand, within RPSI07_RS02595 at 738.643 kb on + strand, within RPSI07_RS02595 at 738.732 kb on + strand, within RPSI07_RS02595 at 738.732 kb on + strand, within RPSI07_RS02595 at 738.790 kb on - strand, within RPSI07_RS02595 at 739.033 kb on + strand at 739.033 kb on + strand at 739.034 kb on - strand at 739.034 kb on - strand at 739.136 kb on + strand at 739.136 kb on + strand at 739.136 kb on + strand at 739.136 kb on + strand at 739.136 kb on + strand at 739.137 kb on - strand at 739.137 kb on - strand at 739.137 kb on - strand at 739.226 kb on + strand at 739.227 kb on - strand at 739.227 kb on - strand at 739.227 kb on - strand at 739.227 kb on - strand at 739.434 kb on - strand, within RPSI07_RS02600 at 739.478 kb on + strand, within RPSI07_RS02600 at 739.478 kb on + strand, within RPSI07_RS02600 at 739.478 kb on + strand, within RPSI07_RS02600 at 739.478 kb on + strand, within RPSI07_RS02600 at 739.478 kb on + strand, within RPSI07_RS02600 at 739.478 kb on + strand, within RPSI07_RS02600 at 739.479 kb on - strand, within RPSI07_RS02600 at 739.479 kb on - strand, within RPSI07_RS02600 at 739.479 kb on - strand, within RPSI07_RS02600 at 739.479 kb on - strand, within RPSI07_RS02600 at 739.479 kb on - strand, within RPSI07_RS02600 at 739.586 kb on + strand, within RPSI07_RS02600 at 739.587 kb on - strand, within RPSI07_RS02600 at 739.587 kb on - strand, within RPSI07_RS02600 at 739.618 kb on + strand, within RPSI07_RS02600 at 739.618 kb on + strand, within RPSI07_RS02600 at 739.618 kb on + strand, within RPSI07_RS02600 at 739.618 kb on + strand, within RPSI07_RS02600 at 739.619 kb on - strand, within RPSI07_RS02600 at 739.619 kb on - strand, within RPSI07_RS02600 at 739.619 kb on - strand, within RPSI07_RS02600 at 739.619 kb on - strand, within RPSI07_RS02600 at 739.700 kb on + strand, within RPSI07_RS02600 at 739.700 kb on + strand, within RPSI07_RS02600 at 739.700 kb on + strand, within RPSI07_RS02600 at 739.700 kb on + strand, within RPSI07_RS02600 at 739.701 kb on - strand, within RPSI07_RS02600 at 739.701 kb on - strand, within RPSI07_RS02600 at 739.701 kb on - strand, within RPSI07_RS02600 at 739.701 kb on - strand, within RPSI07_RS02600 at 739.991 kb on + strand, within RPSI07_RS02600 at 739.993 kb on + strand, within RPSI07_RS02600 at 740.032 kb on + strand, within RPSI07_RS02600 at 740.033 kb on - strand, within RPSI07_RS02600 at 740.049 kb on - strand, within RPSI07_RS02600 at 740.049 kb on - strand, within RPSI07_RS02600 at 740.049 kb on - strand, within RPSI07_RS02600
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Tomato_C21O; PlantTreatment=Petiole_stem_inoculation_Ralstonia; Sample=stem; Collection=Homogenized_filtered_pelleted remove 737,336 + RPSI07_RS02590 0.28 -1.6 737,686 + RPSI07_RS02590 0.67 -1.3 737,686 + RPSI07_RS02590 0.67 -2.0 737,686 + RPSI07_RS02590 0.67 -1.0 737,686 + RPSI07_RS02590 0.67 -2.4 737,686 + RPSI07_RS02590 0.67 -2.8 737,711 + RPSI07_RS02590 0.69 -2.2 737,711 + RPSI07_RS02590 0.69 -0.5 737,711 + RPSI07_RS02590 0.69 -1.3 737,712 - RPSI07_RS02590 0.69 -1.1 737,712 - RPSI07_RS02590 0.69 -0.3 737,712 - RPSI07_RS02590 0.69 -0.9 737,712 - RPSI07_RS02590 0.69 -0.8 737,739 + RPSI07_RS02590 0.72 -1.3 737,739 + RPSI07_RS02590 0.72 -1.2 737,739 + RPSI07_RS02590 0.72 -1.8 737,739 + RPSI07_RS02590 0.72 -0.3 737,739 + RPSI07_RS02590 0.72 -2.2 737,739 + RPSI07_RS02590 0.72 -2.0 737,739 - RPSI07_RS02590 0.72 -0.9 737,740 - RPSI07_RS02590 0.73 -0.1 737,740 - RPSI07_RS02590 0.73 -1.1 737,740 - RPSI07_RS02590 0.73 -1.6 737,740 - RPSI07_RS02590 0.73 -1.7 737,963 + -2.2 737,964 - +0.2 737,997 + -3.4 737,997 + -0.3 737,998 - -1.6 737,998 - -0.2 737,998 - +0.1 737,998 - -1.0 738,019 - -0.9 738,036 + -0.1 738,036 + -0.3 738,036 + -1.1 738,036 + -1.6 738,036 + -0.9 738,037 - +0.8 738,037 - +1.7 738,037 - +0.7 738,037 - -0.1 738,047 - +0.2 738,056 - -1.0 738,056 - +0.9 738,151 + -0.6 738,151 + -0.1 738,152 - +0.7 738,152 - +1.1 738,212 - -0.1 738,286 + -0.2 738,317 + -2.4 738,317 + -1.2 738,317 + -1.3 738,317 + -1.9 738,317 + +0.7 738,317 + -0.7 738,317 + -1.5 738,318 - +0.1 738,318 - +2.7 738,318 - -0.4 738,318 - -0.2 738,318 - -0.0 738,526 + RPSI07_RS02595 0.32 -0.5 738,526 + RPSI07_RS02595 0.32 -0.7 738,527 - RPSI07_RS02595 0.32 -0.4 738,527 - RPSI07_RS02595 0.32 -0.5 738,573 + RPSI07_RS02595 0.38 -1.3 738,573 + RPSI07_RS02595 0.38 -0.1 738,573 + RPSI07_RS02595 0.38 -1.2 738,643 + RPSI07_RS02595 0.47 +2.3 738,732 + RPSI07_RS02595 0.57 -2.1 738,732 + RPSI07_RS02595 0.57 -0.7 738,790 - RPSI07_RS02595 0.64 -1.9 739,033 + -1.8 739,033 + -0.3 739,034 - -2.0 739,034 - -1.3 739,136 + +0.5 739,136 + -0.9 739,136 + -0.1 739,136 + -0.1 739,136 + -0.1 739,137 - +0.2 739,137 - -0.6 739,137 - +0.0 739,226 + +0.1 739,227 - -0.7 739,227 - -1.1 739,227 - +0.1 739,227 - +1.7 739,434 - RPSI07_RS02600 0.15 -0.1 739,478 + RPSI07_RS02600 0.19 +0.9 739,478 + RPSI07_RS02600 0.19 +1.4 739,478 + RPSI07_RS02600 0.19 -0.1 739,478 + RPSI07_RS02600 0.19 +0.7 739,478 + RPSI07_RS02600 0.19 +1.1 739,478 + RPSI07_RS02600 0.19 +0.3 739,479 - RPSI07_RS02600 0.19 +1.0 739,479 - RPSI07_RS02600 0.19 +0.6 739,479 - RPSI07_RS02600 0.19 +1.7 739,479 - RPSI07_RS02600 0.19 +1.7 739,479 - RPSI07_RS02600 0.19 -0.3 739,586 + RPSI07_RS02600 0.28 +0.1 739,587 - RPSI07_RS02600 0.28 +1.9 739,587 - RPSI07_RS02600 0.28 +1.1 739,618 + RPSI07_RS02600 0.31 -0.5 739,618 + RPSI07_RS02600 0.31 -1.1 739,618 + RPSI07_RS02600 0.31 -0.9 739,618 + RPSI07_RS02600 0.31 -0.5 739,619 - RPSI07_RS02600 0.31 -0.2 739,619 - RPSI07_RS02600 0.31 +0.4 739,619 - RPSI07_RS02600 0.31 -0.2 739,619 - RPSI07_RS02600 0.31 +0.3 739,700 + RPSI07_RS02600 0.38 -1.1 739,700 + RPSI07_RS02600 0.38 -0.5 739,700 + RPSI07_RS02600 0.38 +0.1 739,700 + RPSI07_RS02600 0.38 +0.7 739,701 - RPSI07_RS02600 0.38 +0.7 739,701 - RPSI07_RS02600 0.38 +0.1 739,701 - RPSI07_RS02600 0.38 +0.9 739,701 - RPSI07_RS02600 0.38 -1.0 739,991 + RPSI07_RS02600 0.63 +0.1 739,993 + RPSI07_RS02600 0.63 -0.1 740,032 + RPSI07_RS02600 0.66 +0.5 740,033 - RPSI07_RS02600 0.67 -0.5 740,049 - RPSI07_RS02600 0.68 -0.1 740,049 - RPSI07_RS02600 0.68 +0.3 740,049 - RPSI07_RS02600 0.68 -0.0
Or see this region's nucleotide sequence