Experiment: m.b. Carbenicillin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4550 and Echvi_4551 are separated by 30 nucleotides Echvi_4551 and Echvi_4552 are separated by 339 nucleotides Echvi_4552 and Echvi_4553 are separated by 107 nucleotides Echvi_4553 and Echvi_4554 are separated by 18 nucleotides
Echvi_4550: Echvi_4550 - hypothetical protein, at 5,445,758 to 5,446,381
_4550
Echvi_4551: Echvi_4551 - hypothetical protein, at 5,446,412 to 5,446,741
_4551
Echvi_4552: Echvi_4552 - Bacterial Ig-like domain (group 4)./Putative glycosyl hydrolase of unknown function (DUF1680)., at 5,447,081 to 5,450,209
_4552
Echvi_4553: Echvi_4553 - hypothetical protein, at 5,450,317 to 5,450,781
_4553
Echvi_4554: Echvi_4554 - Outer membrane receptor proteins, mostly Fe transport, at 5,450,800 to 5,453,031
_4554
Position (kb) 5447
5448
5449
5450
5451 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 5446.182 kb on + strand, within Echvi_4550 at 5446.182 kb on + strand, within Echvi_4550 at 5446.182 kb on + strand, within Echvi_4550 at 5446.184 kb on + strand, within Echvi_4550 at 5446.199 kb on + strand, within Echvi_4550 at 5446.199 kb on + strand, within Echvi_4550 at 5446.211 kb on - strand, within Echvi_4550 at 5446.310 kb on + strand, within Echvi_4550 at 5446.311 kb on - strand, within Echvi_4550 at 5446.356 kb on + strand at 5446.369 kb on + strand at 5446.413 kb on + strand at 5446.415 kb on + strand at 5446.416 kb on - strand at 5446.471 kb on + strand, within Echvi_4551 at 5446.578 kb on + strand, within Echvi_4551 at 5446.578 kb on + strand, within Echvi_4551 at 5446.578 kb on + strand, within Echvi_4551 at 5446.582 kb on + strand, within Echvi_4551 at 5446.582 kb on + strand, within Echvi_4551 at 5446.582 kb on + strand, within Echvi_4551 at 5446.628 kb on + strand, within Echvi_4551 at 5446.741 kb on + strand at 5446.759 kb on + strand at 5446.789 kb on + strand at 5446.791 kb on + strand at 5446.791 kb on + strand at 5446.791 kb on + strand at 5446.803 kb on + strand at 5446.813 kb on + strand at 5446.835 kb on + strand at 5446.977 kb on + strand at 5446.978 kb on - strand at 5446.989 kb on + strand at 5447.011 kb on + strand at 5447.011 kb on + strand at 5447.022 kb on + strand at 5447.022 kb on + strand at 5447.022 kb on + strand at 5447.024 kb on + strand at 5447.024 kb on + strand at 5447.067 kb on + strand at 5447.070 kb on + strand at 5447.149 kb on + strand at 5447.149 kb on + strand at 5447.149 kb on + strand at 5447.178 kb on + strand at 5447.178 kb on + strand at 5447.179 kb on - strand at 5447.250 kb on + strand at 5447.379 kb on + strand at 5447.379 kb on + strand at 5447.379 kb on + strand at 5447.380 kb on - strand at 5447.693 kb on + strand, within Echvi_4552 at 5447.751 kb on + strand, within Echvi_4552 at 5447.820 kb on + strand, within Echvi_4552 at 5447.962 kb on - strand, within Echvi_4552 at 5447.988 kb on - strand, within Echvi_4552 at 5447.996 kb on + strand, within Echvi_4552 at 5448.009 kb on + strand, within Echvi_4552 at 5448.010 kb on - strand, within Echvi_4552 at 5448.158 kb on - strand, within Echvi_4552 at 5448.161 kb on + strand, within Echvi_4552 at 5448.162 kb on - strand, within Echvi_4552 at 5448.162 kb on - strand, within Echvi_4552 at 5448.162 kb on - strand, within Echvi_4552 at 5448.231 kb on + strand, within Echvi_4552 at 5448.231 kb on + strand, within Echvi_4552 at 5448.232 kb on - strand, within Echvi_4552 at 5448.232 kb on - strand, within Echvi_4552 at 5448.282 kb on + strand, within Echvi_4552 at 5448.569 kb on + strand, within Echvi_4552 at 5448.569 kb on + strand, within Echvi_4552 at 5448.569 kb on + strand, within Echvi_4552 at 5448.569 kb on + strand, within Echvi_4552 at 5448.569 kb on + strand, within Echvi_4552 at 5448.570 kb on - strand, within Echvi_4552 at 5448.571 kb on + strand, within Echvi_4552 at 5448.585 kb on + strand, within Echvi_4552 at 5448.586 kb on - strand, within Echvi_4552 at 5448.587 kb on + strand, within Echvi_4552 at 5448.589 kb on + strand, within Echvi_4552 at 5448.589 kb on + strand, within Echvi_4552 at 5448.590 kb on - strand, within Echvi_4552 at 5448.698 kb on - strand, within Echvi_4552 at 5448.715 kb on + strand, within Echvi_4552 at 5448.743 kb on + strand, within Echvi_4552 at 5448.743 kb on + strand, within Echvi_4552 at 5448.743 kb on + strand, within Echvi_4552 at 5448.743 kb on + strand, within Echvi_4552 at 5448.743 kb on + strand, within Echvi_4552 at 5448.743 kb on + strand, within Echvi_4552 at 5448.745 kb on + strand, within Echvi_4552 at 5448.745 kb on + strand, within Echvi_4552 at 5448.745 kb on + strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.746 kb on - strand, within Echvi_4552 at 5448.797 kb on + strand, within Echvi_4552 at 5448.798 kb on - strand, within Echvi_4552 at 5448.831 kb on - strand, within Echvi_4552 at 5448.831 kb on - strand, within Echvi_4552 at 5448.869 kb on - strand, within Echvi_4552 at 5448.869 kb on - strand, within Echvi_4552 at 5448.872 kb on + strand, within Echvi_4552 at 5448.872 kb on + strand, within Echvi_4552 at 5448.873 kb on - strand, within Echvi_4552 at 5448.873 kb on - strand, within Echvi_4552 at 5448.873 kb on - strand, within Echvi_4552 at 5448.873 kb on - strand, within Echvi_4552 at 5448.879 kb on + strand, within Echvi_4552 at 5448.879 kb on + strand, within Echvi_4552 at 5448.879 kb on + strand, within Echvi_4552 at 5448.880 kb on - strand, within Echvi_4552 at 5448.986 kb on + strand, within Echvi_4552 at 5448.986 kb on + strand, within Echvi_4552 at 5448.987 kb on - strand, within Echvi_4552 at 5448.987 kb on - strand, within Echvi_4552 at 5448.987 kb on - strand, within Echvi_4552 at 5449.095 kb on + strand, within Echvi_4552 at 5449.095 kb on + strand, within Echvi_4552 at 5449.096 kb on - strand, within Echvi_4552 at 5449.205 kb on + strand, within Echvi_4552 at 5449.230 kb on - strand, within Echvi_4552 at 5449.274 kb on + strand, within Echvi_4552 at 5449.274 kb on + strand, within Echvi_4552 at 5449.274 kb on + strand, within Echvi_4552 at 5449.275 kb on - strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.276 kb on + strand, within Echvi_4552 at 5449.277 kb on - strand, within Echvi_4552 at 5449.277 kb on - strand, within Echvi_4552 at 5449.277 kb on - strand, within Echvi_4552 at 5449.277 kb on - strand, within Echvi_4552 at 5449.277 kb on - strand, within Echvi_4552 at 5449.277 kb on - strand, within Echvi_4552 at 5449.280 kb on + strand, within Echvi_4552 at 5449.285 kb on + strand, within Echvi_4552 at 5449.286 kb on - strand, within Echvi_4552 at 5449.403 kb on + strand, within Echvi_4552 at 5449.437 kb on + strand, within Echvi_4552 at 5449.437 kb on + strand, within Echvi_4552 at 5449.457 kb on + strand, within Echvi_4552 at 5449.457 kb on + strand, within Echvi_4552 at 5449.458 kb on - strand, within Echvi_4552 at 5449.458 kb on - strand, within Echvi_4552 at 5449.458 kb on - strand, within Echvi_4552 at 5449.459 kb on + strand, within Echvi_4552 at 5449.466 kb on + strand, within Echvi_4552 at 5449.484 kb on + strand, within Echvi_4552 at 5449.532 kb on + strand, within Echvi_4552 at 5449.532 kb on + strand, within Echvi_4552 at 5449.532 kb on + strand, within Echvi_4552 at 5449.532 kb on + strand, within Echvi_4552 at 5449.533 kb on - strand, within Echvi_4552 at 5449.679 kb on + strand, within Echvi_4552 at 5449.679 kb on + strand, within Echvi_4552 at 5449.689 kb on + strand, within Echvi_4552 at 5449.744 kb on + strand, within Echvi_4552 at 5449.783 kb on - strand, within Echvi_4552 at 5449.783 kb on - strand, within Echvi_4552 at 5449.813 kb on + strand, within Echvi_4552 at 5449.895 kb on + strand, within Echvi_4552 at 5449.895 kb on + strand, within Echvi_4552 at 5449.896 kb on - strand, within Echvi_4552 at 5449.912 kb on + strand at 5449.912 kb on + strand at 5450.065 kb on - strand at 5450.065 kb on - strand at 5450.144 kb on + strand at 5450.145 kb on - strand at 5450.183 kb on + strand at 5450.263 kb on + strand at 5450.263 kb on + strand at 5450.318 kb on + strand at 5450.323 kb on + strand at 5450.323 kb on + strand at 5450.324 kb on - strand at 5450.329 kb on - strand at 5450.329 kb on - strand at 5450.382 kb on + strand, within Echvi_4553 at 5450.423 kb on - strand, within Echvi_4553 at 5450.442 kb on - strand, within Echvi_4553 at 5450.563 kb on - strand, within Echvi_4553 at 5450.601 kb on + strand, within Echvi_4553 at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.784 kb on + strand at 5450.785 kb on - strand at 5450.785 kb on - strand at 5450.785 kb on - strand at 5450.785 kb on - strand at 5450.785 kb on - strand at 5450.786 kb on + strand at 5450.786 kb on + strand at 5450.794 kb on + strand at 5451.007 kb on + strand at 5451.037 kb on + strand, within Echvi_4554 at 5451.038 kb on - strand, within Echvi_4554 at 5451.090 kb on - strand, within Echvi_4554 at 5451.094 kb on - strand, within Echvi_4554 at 5451.094 kb on - strand, within Echvi_4554 at 5451.097 kb on - strand, within Echvi_4554 at 5451.135 kb on + strand, within Echvi_4554 at 5451.135 kb on + strand, within Echvi_4554 at 5451.135 kb on + strand, within Echvi_4554 at 5451.171 kb on - strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.176 kb on + strand, within Echvi_4554 at 5451.177 kb on - strand, within Echvi_4554 at 5451.177 kb on - strand, within Echvi_4554
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml remove 5,446,182 + Echvi_4550 0.68 -0.1 5,446,182 + Echvi_4550 0.68 -0.4 5,446,182 + Echvi_4550 0.68 -0.3 5,446,184 + Echvi_4550 0.68 +1.6 5,446,199 + Echvi_4550 0.71 +0.9 5,446,199 + Echvi_4550 0.71 +1.6 5,446,211 - Echvi_4550 0.73 -1.8 5,446,310 + Echvi_4550 0.88 -1.3 5,446,311 - Echvi_4550 0.89 -0.1 5,446,356 + +1.1 5,446,369 + -1.2 5,446,413 + -0.2 5,446,415 + -0.0 5,446,416 - +1.0 5,446,471 + Echvi_4551 0.18 -1.0 5,446,578 + Echvi_4551 0.50 -0.4 5,446,578 + Echvi_4551 0.50 -0.8 5,446,578 + Echvi_4551 0.50 -1.4 5,446,582 + Echvi_4551 0.52 +0.1 5,446,582 + Echvi_4551 0.52 -1.2 5,446,582 + Echvi_4551 0.52 +1.1 5,446,628 + Echvi_4551 0.65 -0.3 5,446,741 + +0.2 5,446,759 + +1.6 5,446,789 + +1.6 5,446,791 + -0.1 5,446,791 + -0.8 5,446,791 + +0.0 5,446,803 + +0.4 5,446,813 + -1.2 5,446,835 + +0.0 5,446,977 + +0.3 5,446,978 - -0.3 5,446,989 + -0.2 5,447,011 + +0.2 5,447,011 + -1.4 5,447,022 + -1.6 5,447,022 + +0.4 5,447,022 + -0.4 5,447,024 + -0.0 5,447,024 + +1.4 5,447,067 + -0.1 5,447,070 + -1.4 5,447,149 + -0.1 5,447,149 + -0.2 5,447,149 + +0.7 5,447,178 + +0.5 5,447,178 + +1.2 5,447,179 - -0.4 5,447,250 + -0.4 5,447,379 + -0.8 5,447,379 + -0.7 5,447,379 + -0.6 5,447,380 - -1.0 5,447,693 + Echvi_4552 0.20 +1.0 5,447,751 + Echvi_4552 0.21 -1.4 5,447,820 + Echvi_4552 0.24 -0.2 5,447,962 - Echvi_4552 0.28 +0.1 5,447,988 - Echvi_4552 0.29 +0.6 5,447,996 + Echvi_4552 0.29 +0.2 5,448,009 + Echvi_4552 0.30 +0.7 5,448,010 - Echvi_4552 0.30 -0.0 5,448,158 - Echvi_4552 0.34 +1.3 5,448,161 + Echvi_4552 0.35 -2.1 5,448,162 - Echvi_4552 0.35 -0.9 5,448,162 - Echvi_4552 0.35 -0.4 5,448,162 - Echvi_4552 0.35 -0.3 5,448,231 + Echvi_4552 0.37 +0.3 5,448,231 + Echvi_4552 0.37 +0.4 5,448,232 - Echvi_4552 0.37 -0.8 5,448,232 - Echvi_4552 0.37 +0.4 5,448,282 + Echvi_4552 0.38 +0.9 5,448,569 + Echvi_4552 0.48 +0.3 5,448,569 + Echvi_4552 0.48 +0.9 5,448,569 + Echvi_4552 0.48 +0.8 5,448,569 + Echvi_4552 0.48 +0.2 5,448,569 + Echvi_4552 0.48 +1.3 5,448,570 - Echvi_4552 0.48 -0.4 5,448,571 + Echvi_4552 0.48 +0.4 5,448,585 + Echvi_4552 0.48 -2.1 5,448,586 - Echvi_4552 0.48 +1.2 5,448,587 + Echvi_4552 0.48 +0.9 5,448,589 + Echvi_4552 0.48 -0.1 5,448,589 + Echvi_4552 0.48 +0.6 5,448,590 - Echvi_4552 0.48 -1.7 5,448,698 - Echvi_4552 0.52 +0.2 5,448,715 + Echvi_4552 0.52 -0.8 5,448,743 + Echvi_4552 0.53 +0.1 5,448,743 + Echvi_4552 0.53 -1.4 5,448,743 + Echvi_4552 0.53 -1.1 5,448,743 + Echvi_4552 0.53 -0.1 5,448,743 + Echvi_4552 0.53 +1.1 5,448,743 + Echvi_4552 0.53 -0.4 5,448,745 + Echvi_4552 0.53 +1.0 5,448,745 + Echvi_4552 0.53 +0.8 5,448,745 + Echvi_4552 0.53 +1.6 5,448,746 - Echvi_4552 0.53 -0.6 5,448,746 - Echvi_4552 0.53 -1.3 5,448,746 - Echvi_4552 0.53 -0.9 5,448,746 - Echvi_4552 0.53 +0.0 5,448,746 - Echvi_4552 0.53 -0.3 5,448,746 - Echvi_4552 0.53 +0.7 5,448,746 - Echvi_4552 0.53 +0.2 5,448,797 + Echvi_4552 0.55 +0.4 5,448,798 - Echvi_4552 0.55 +0.6 5,448,831 - Echvi_4552 0.56 -0.3 5,448,831 - Echvi_4552 0.56 +2.4 5,448,869 - Echvi_4552 0.57 +2.3 5,448,869 - Echvi_4552 0.57 -0.3 5,448,872 + Echvi_4552 0.57 +0.4 5,448,872 + Echvi_4552 0.57 +0.5 5,448,873 - Echvi_4552 0.57 -0.8 5,448,873 - Echvi_4552 0.57 +0.2 5,448,873 - Echvi_4552 0.57 +0.5 5,448,873 - Echvi_4552 0.57 +1.2 5,448,879 + Echvi_4552 0.57 -1.0 5,448,879 + Echvi_4552 0.57 -1.2 5,448,879 + Echvi_4552 0.57 +1.4 5,448,880 - Echvi_4552 0.57 +0.8 5,448,986 + Echvi_4552 0.61 +1.7 5,448,986 + Echvi_4552 0.61 -0.2 5,448,987 - Echvi_4552 0.61 +0.2 5,448,987 - Echvi_4552 0.61 -1.4 5,448,987 - Echvi_4552 0.61 +3.6 5,449,095 + Echvi_4552 0.64 +0.2 5,449,095 + Echvi_4552 0.64 -1.6 5,449,096 - Echvi_4552 0.64 -0.0 5,449,205 + Echvi_4552 0.68 +0.2 5,449,230 - Echvi_4552 0.69 +0.8 5,449,274 + Echvi_4552 0.70 -0.5 5,449,274 + Echvi_4552 0.70 +0.1 5,449,274 + Echvi_4552 0.70 -0.5 5,449,275 - Echvi_4552 0.70 +0.5 5,449,276 + Echvi_4552 0.70 -0.2 5,449,276 + Echvi_4552 0.70 -0.3 5,449,276 + Echvi_4552 0.70 -0.2 5,449,276 + Echvi_4552 0.70 -0.3 5,449,276 + Echvi_4552 0.70 +0.7 5,449,276 + Echvi_4552 0.70 -0.6 5,449,276 + Echvi_4552 0.70 +0.5 5,449,276 + Echvi_4552 0.70 -0.0 5,449,277 - Echvi_4552 0.70 +0.3 5,449,277 - Echvi_4552 0.70 +0.5 5,449,277 - Echvi_4552 0.70 +0.1 5,449,277 - Echvi_4552 0.70 -0.0 5,449,277 - Echvi_4552 0.70 -0.1 5,449,277 - Echvi_4552 0.70 -0.6 5,449,280 + Echvi_4552 0.70 +1.3 5,449,285 + Echvi_4552 0.70 +0.4 5,449,286 - Echvi_4552 0.70 +0.1 5,449,403 + Echvi_4552 0.74 +1.6 5,449,437 + Echvi_4552 0.75 -1.0 5,449,437 + Echvi_4552 0.75 +0.2 5,449,457 + Echvi_4552 0.76 +0.4 5,449,457 + Echvi_4552 0.76 -0.2 5,449,458 - Echvi_4552 0.76 -0.3 5,449,458 - Echvi_4552 0.76 -2.0 5,449,458 - Echvi_4552 0.76 -0.1 5,449,459 + Echvi_4552 0.76 -1.2 5,449,466 + Echvi_4552 0.76 +0.4 5,449,484 + Echvi_4552 0.77 -1.0 5,449,532 + Echvi_4552 0.78 -0.9 5,449,532 + Echvi_4552 0.78 +0.2 5,449,532 + Echvi_4552 0.78 -0.0 5,449,532 + Echvi_4552 0.78 +0.5 5,449,533 - Echvi_4552 0.78 -0.3 5,449,679 + Echvi_4552 0.83 +1.3 5,449,679 + Echvi_4552 0.83 +0.6 5,449,689 + Echvi_4552 0.83 +1.0 5,449,744 + Echvi_4552 0.85 +1.0 5,449,783 - Echvi_4552 0.86 +1.0 5,449,783 - Echvi_4552 0.86 +0.6 5,449,813 + Echvi_4552 0.87 +0.6 5,449,895 + Echvi_4552 0.90 -0.3 5,449,895 + Echvi_4552 0.90 +1.2 5,449,896 - Echvi_4552 0.90 +0.6 5,449,912 + +2.2 5,449,912 + +1.6 5,450,065 - +0.0 5,450,065 - +1.1 5,450,144 + -0.1 5,450,145 - -0.3 5,450,183 + -1.2 5,450,263 + -0.1 5,450,263 + +0.6 5,450,318 + -0.2 5,450,323 + +0.6 5,450,323 + +0.8 5,450,324 - -0.3 5,450,329 - -0.0 5,450,329 - +0.2 5,450,382 + Echvi_4553 0.14 +0.2 5,450,423 - Echvi_4553 0.23 -1.2 5,450,442 - Echvi_4553 0.27 +1.6 5,450,563 - Echvi_4553 0.53 -0.6 5,450,601 + Echvi_4553 0.61 -0.0 5,450,784 + -0.2 5,450,784 + -0.3 5,450,784 + +0.3 5,450,784 + -0.6 5,450,784 + -0.9 5,450,784 + -0.1 5,450,784 + -0.8 5,450,784 + +1.1 5,450,785 - +0.5 5,450,785 - -0.7 5,450,785 - +0.7 5,450,785 - -0.0 5,450,785 - +0.1 5,450,786 + -0.5 5,450,786 + -0.8 5,450,794 + -0.3 5,451,007 + +0.6 5,451,037 + Echvi_4554 0.11 -0.4 5,451,038 - Echvi_4554 0.11 +1.1 5,451,090 - Echvi_4554 0.13 -0.2 5,451,094 - Echvi_4554 0.13 -0.0 5,451,094 - Echvi_4554 0.13 +0.4 5,451,097 - Echvi_4554 0.13 +0.6 5,451,135 + Echvi_4554 0.15 -0.2 5,451,135 + Echvi_4554 0.15 +0.4 5,451,135 + Echvi_4554 0.15 -0.0 5,451,171 - Echvi_4554 0.17 +1.6 5,451,176 + Echvi_4554 0.17 -0.4 5,451,176 + Echvi_4554 0.17 +1.1 5,451,176 + Echvi_4554 0.17 -0.4 5,451,176 + Echvi_4554 0.17 -0.8 5,451,176 + Echvi_4554 0.17 -1.8 5,451,177 - Echvi_4554 0.17 -0.0 5,451,177 - Echvi_4554 0.17 -0.8
Or see this region's nucleotide sequence