Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4440

Experiment: m.b. Carbenicillin 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_4439 and Echvi_4440 are separated by 87 nucleotidesEchvi_4440 and Echvi_4441 are separated by 6 nucleotidesEchvi_4441 and Echvi_4442 overlap by 8 nucleotides Echvi_4439: Echvi_4439 - Site-specific recombinase XerD, at 5,311,601 to 5,312,527 _4439 Echvi_4440: Echvi_4440 - hypothetical protein, at 5,312,615 to 5,312,810 _4440 Echvi_4441: Echvi_4441 - Restriction endonuclease S subunits, at 5,312,817 to 5,313,734 _4441 Echvi_4442: Echvi_4442 - Restriction endonuclease S subunits, at 5,313,727 to 5,314,965 _4442 Position (kb) 5312 5313Strain fitness (log2 ratio) -2 -1 0 1at 5311.651 kb on + strandat 5311.665 kb on + strandat 5311.672 kb on + strandat 5311.684 kb on + strandat 5311.684 kb on + strandat 5311.685 kb on - strandat 5311.721 kb on - strand, within Echvi_4439at 5311.739 kb on + strand, within Echvi_4439at 5311.740 kb on - strand, within Echvi_4439at 5311.741 kb on + strand, within Echvi_4439at 5311.742 kb on - strand, within Echvi_4439at 5311.796 kb on + strand, within Echvi_4439at 5311.796 kb on + strand, within Echvi_4439at 5311.821 kb on + strand, within Echvi_4439at 5311.821 kb on + strand, within Echvi_4439at 5311.822 kb on - strand, within Echvi_4439at 5311.822 kb on - strand, within Echvi_4439at 5311.830 kb on + strand, within Echvi_4439at 5311.830 kb on + strand, within Echvi_4439at 5311.831 kb on - strand, within Echvi_4439at 5311.847 kb on - strand, within Echvi_4439at 5311.864 kb on + strand, within Echvi_4439at 5312.006 kb on + strand, within Echvi_4439at 5312.006 kb on + strand, within Echvi_4439at 5312.006 kb on + strand, within Echvi_4439at 5312.012 kb on - strand, within Echvi_4439at 5312.060 kb on - strand, within Echvi_4439at 5312.063 kb on + strand, within Echvi_4439at 5312.064 kb on - strand, within Echvi_4439at 5312.123 kb on - strand, within Echvi_4439at 5312.124 kb on + strand, within Echvi_4439at 5312.124 kb on + strand, within Echvi_4439at 5312.125 kb on - strand, within Echvi_4439at 5312.125 kb on - strand, within Echvi_4439at 5312.159 kb on + strand, within Echvi_4439at 5312.159 kb on + strand, within Echvi_4439at 5312.160 kb on - strand, within Echvi_4439at 5312.160 kb on - strand, within Echvi_4439at 5312.160 kb on - strand, within Echvi_4439at 5312.160 kb on - strand, within Echvi_4439at 5312.161 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.204 kb on + strand, within Echvi_4439at 5312.206 kb on + strand, within Echvi_4439at 5312.206 kb on + strand, within Echvi_4439at 5312.207 kb on - strand, within Echvi_4439at 5312.252 kb on - strand, within Echvi_4439at 5312.375 kb on - strand, within Echvi_4439at 5312.416 kb on + strand, within Echvi_4439at 5312.435 kb on + strandat 5312.435 kb on + strandat 5312.436 kb on - strandat 5312.436 kb on - strandat 5312.436 kb on - strandat 5312.439 kb on + strandat 5312.439 kb on + strandat 5312.440 kb on - strandat 5312.440 kb on - strandat 5312.440 kb on - strandat 5312.440 kb on - strandat 5312.463 kb on - strandat 5312.467 kb on - strandat 5312.467 kb on - strandat 5312.509 kb on + strandat 5312.509 kb on + strandat 5312.510 kb on - strandat 5312.545 kb on + strandat 5312.549 kb on + strandat 5312.549 kb on + strandat 5312.570 kb on + strandat 5312.577 kb on + strandat 5312.668 kb on - strand, within Echvi_4440at 5312.690 kb on - strand, within Echvi_4440at 5312.716 kb on + strand, within Echvi_4440at 5312.716 kb on + strand, within Echvi_4440at 5312.717 kb on - strand, within Echvi_4440at 5312.717 kb on - strand, within Echvi_4440at 5312.717 kb on - strand, within Echvi_4440at 5312.717 kb on - strand, within Echvi_4440at 5312.717 kb on - strand, within Echvi_4440at 5312.718 kb on + strand, within Echvi_4440at 5312.719 kb on - strand, within Echvi_4440at 5312.719 kb on - strand, within Echvi_4440at 5312.719 kb on - strand, within Echvi_4440at 5312.723 kb on + strand, within Echvi_4440at 5312.761 kb on + strand, within Echvi_4440at 5312.762 kb on - strand, within Echvi_4440at 5312.765 kb on + strand, within Echvi_4440at 5312.765 kb on + strand, within Echvi_4440at 5312.774 kb on + strand, within Echvi_4440at 5312.775 kb on - strand, within Echvi_4440at 5312.775 kb on - strand, within Echvi_4440at 5312.776 kb on + strand, within Echvi_4440at 5312.786 kb on + strand, within Echvi_4440at 5312.786 kb on + strand, within Echvi_4440at 5312.786 kb on + strand, within Echvi_4440at 5312.787 kb on - strand, within Echvi_4440at 5312.787 kb on - strand, within Echvi_4440at 5312.787 kb on - strand, within Echvi_4440at 5312.787 kb on - strand, within Echvi_4440at 5312.787 kb on - strand, within Echvi_4440at 5312.787 kb on - strand, within Echvi_4440at 5312.792 kb on + strandat 5312.792 kb on + strandat 5312.793 kb on - strandat 5312.846 kb on + strandat 5312.915 kb on + strand, within Echvi_4441at 5312.916 kb on - strand, within Echvi_4441at 5312.916 kb on - strand, within Echvi_4441at 5312.942 kb on - strand, within Echvi_4441at 5312.984 kb on - strand, within Echvi_4441at 5313.071 kb on + strand, within Echvi_4441at 5313.077 kb on - strand, within Echvi_4441at 5313.122 kb on - strand, within Echvi_4441at 5313.128 kb on - strand, within Echvi_4441at 5313.128 kb on - strand, within Echvi_4441at 5313.128 kb on - strand, within Echvi_4441at 5313.193 kb on + strand, within Echvi_4441at 5313.194 kb on - strand, within Echvi_4441at 5313.206 kb on - strand, within Echvi_4441at 5313.307 kb on + strand, within Echvi_4441at 5313.308 kb on - strand, within Echvi_4441at 5313.308 kb on - strand, within Echvi_4441at 5313.322 kb on + strand, within Echvi_4441at 5313.322 kb on + strand, within Echvi_4441at 5313.323 kb on - strand, within Echvi_4441at 5313.345 kb on + strand, within Echvi_4441at 5313.387 kb on + strand, within Echvi_4441at 5313.392 kb on + strand, within Echvi_4441at 5313.392 kb on + strand, within Echvi_4441at 5313.393 kb on - strand, within Echvi_4441at 5313.393 kb on - strand, within Echvi_4441at 5313.393 kb on - strand, within Echvi_4441at 5313.393 kb on - strand, within Echvi_4441at 5313.412 kb on + strand, within Echvi_4441at 5313.412 kb on + strand, within Echvi_4441at 5313.412 kb on + strand, within Echvi_4441at 5313.413 kb on - strand, within Echvi_4441at 5313.413 kb on - strand, within Echvi_4441at 5313.427 kb on - strand, within Echvi_4441at 5313.427 kb on - strand, within Echvi_4441at 5313.429 kb on + strand, within Echvi_4441at 5313.430 kb on - strand, within Echvi_4441at 5313.478 kb on - strand, within Echvi_4441at 5313.524 kb on - strand, within Echvi_4441at 5313.580 kb on + strand, within Echvi_4441at 5313.649 kb on + strandat 5313.649 kb on + strandat 5313.650 kb on - strandat 5313.689 kb on - strandat 5313.689 kb on - strandat 5313.689 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml
remove
5,311,651 + -0.0
5,311,665 + -0.0
5,311,672 + -1.4
5,311,684 + +0.2
5,311,684 + +0.7
5,311,685 - +0.2
5,311,721 - Echvi_4439 0.13 +0.1
5,311,739 + Echvi_4439 0.15 -1.2
5,311,740 - Echvi_4439 0.15 +0.9
5,311,741 + Echvi_4439 0.15 -1.8
5,311,742 - Echvi_4439 0.15 -0.2
5,311,796 + Echvi_4439 0.21 -1.9
5,311,796 + Echvi_4439 0.21 -0.9
5,311,821 + Echvi_4439 0.24 -0.4
5,311,821 + Echvi_4439 0.24 -0.3
5,311,822 - Echvi_4439 0.24 +0.8
5,311,822 - Echvi_4439 0.24 -1.4
5,311,830 + Echvi_4439 0.25 -0.7
5,311,830 + Echvi_4439 0.25 +0.5
5,311,831 - Echvi_4439 0.25 +0.1
5,311,847 - Echvi_4439 0.27 +0.1
5,311,864 + Echvi_4439 0.28 +1.6
5,312,006 + Echvi_4439 0.44 -0.4
5,312,006 + Echvi_4439 0.44 -1.2
5,312,006 + Echvi_4439 0.44 +0.4
5,312,012 - Echvi_4439 0.44 +0.8
5,312,060 - Echvi_4439 0.50 +1.0
5,312,063 + Echvi_4439 0.50 -0.6
5,312,064 - Echvi_4439 0.50 -0.2
5,312,123 - Echvi_4439 0.56 -0.2
5,312,124 + Echvi_4439 0.56 -0.2
5,312,124 + Echvi_4439 0.56 +1.0
5,312,125 - Echvi_4439 0.57 +1.1
5,312,125 - Echvi_4439 0.57 -0.8
5,312,159 + Echvi_4439 0.60 +0.2
5,312,159 + Echvi_4439 0.60 +0.3
5,312,160 - Echvi_4439 0.60 +0.9
5,312,160 - Echvi_4439 0.60 -0.9
5,312,160 - Echvi_4439 0.60 -0.8
5,312,160 - Echvi_4439 0.60 +0.6
5,312,161 + Echvi_4439 0.60 -0.1
5,312,204 + Echvi_4439 0.65 +0.6
5,312,204 + Echvi_4439 0.65 -1.2
5,312,204 + Echvi_4439 0.65 -0.8
5,312,204 + Echvi_4439 0.65 -1.8
5,312,204 + Echvi_4439 0.65 -2.2
5,312,206 + Echvi_4439 0.65 +1.1
5,312,206 + Echvi_4439 0.65 -0.1
5,312,207 - Echvi_4439 0.65 +1.2
5,312,252 - Echvi_4439 0.70 -1.5
5,312,375 - Echvi_4439 0.83 -0.1
5,312,416 + Echvi_4439 0.88 +0.2
5,312,435 + -0.4
5,312,435 + -0.5
5,312,436 - -0.8
5,312,436 - +0.1
5,312,436 - +0.0
5,312,439 + -1.0
5,312,439 + -0.7
5,312,440 - -0.2
5,312,440 - -2.0
5,312,440 - +0.4
5,312,440 - -0.2
5,312,463 - +0.6
5,312,467 - -0.6
5,312,467 - -0.1
5,312,509 + -0.5
5,312,509 + +1.0
5,312,510 - -0.5
5,312,545 + -0.6
5,312,549 + -0.8
5,312,549 + +0.3
5,312,570 + -0.8
5,312,577 + -2.5
5,312,668 - Echvi_4440 0.27 -0.9
5,312,690 - Echvi_4440 0.38 -1.9
5,312,716 + Echvi_4440 0.52 +0.1
5,312,716 + Echvi_4440 0.52 -0.2
5,312,717 - Echvi_4440 0.52 -0.3
5,312,717 - Echvi_4440 0.52 -1.0
5,312,717 - Echvi_4440 0.52 -0.6
5,312,717 - Echvi_4440 0.52 -1.1
5,312,717 - Echvi_4440 0.52 -0.3
5,312,718 + Echvi_4440 0.53 +0.2
5,312,719 - Echvi_4440 0.53 -0.0
5,312,719 - Echvi_4440 0.53 -0.9
5,312,719 - Echvi_4440 0.53 -0.1
5,312,723 + Echvi_4440 0.55 -0.3
5,312,761 + Echvi_4440 0.74 -0.2
5,312,762 - Echvi_4440 0.75 -0.8
5,312,765 + Echvi_4440 0.77 +0.1
5,312,765 + Echvi_4440 0.77 +1.3
5,312,774 + Echvi_4440 0.81 -0.5
5,312,775 - Echvi_4440 0.82 +0.4
5,312,775 - Echvi_4440 0.82 +0.0
5,312,776 + Echvi_4440 0.82 -1.1
5,312,786 + Echvi_4440 0.87 -0.6
5,312,786 + Echvi_4440 0.87 -0.5
5,312,786 + Echvi_4440 0.87 +0.2
5,312,787 - Echvi_4440 0.88 -1.3
5,312,787 - Echvi_4440 0.88 +0.1
5,312,787 - Echvi_4440 0.88 -0.8
5,312,787 - Echvi_4440 0.88 +0.7
5,312,787 - Echvi_4440 0.88 -0.7
5,312,787 - Echvi_4440 0.88 -1.8
5,312,792 + -0.7
5,312,792 + -0.3
5,312,793 - -0.2
5,312,846 + +0.6
5,312,915 + Echvi_4441 0.11 -0.8
5,312,916 - Echvi_4441 0.11 -0.4
5,312,916 - Echvi_4441 0.11 +0.3
5,312,942 - Echvi_4441 0.14 -0.8
5,312,984 - Echvi_4441 0.18 +0.6
5,313,071 + Echvi_4441 0.28 -0.8
5,313,077 - Echvi_4441 0.28 -1.2
5,313,122 - Echvi_4441 0.33 -0.4
5,313,128 - Echvi_4441 0.34 -0.1
5,313,128 - Echvi_4441 0.34 -1.0
5,313,128 - Echvi_4441 0.34 -1.5
5,313,193 + Echvi_4441 0.41 +0.2
5,313,194 - Echvi_4441 0.41 +0.1
5,313,206 - Echvi_4441 0.42 -1.8
5,313,307 + Echvi_4441 0.53 +0.8
5,313,308 - Echvi_4441 0.53 -1.4
5,313,308 - Echvi_4441 0.53 -0.0
5,313,322 + Echvi_4441 0.55 -1.0
5,313,322 + Echvi_4441 0.55 +0.6
5,313,323 - Echvi_4441 0.55 +1.1
5,313,345 + Echvi_4441 0.58 -1.3
5,313,387 + Echvi_4441 0.62 +0.2
5,313,392 + Echvi_4441 0.63 -0.5
5,313,392 + Echvi_4441 0.63 -0.4
5,313,393 - Echvi_4441 0.63 -0.8
5,313,393 - Echvi_4441 0.63 +0.1
5,313,393 - Echvi_4441 0.63 -0.4
5,313,393 - Echvi_4441 0.63 -2.5
5,313,412 + Echvi_4441 0.65 -1.0
5,313,412 + Echvi_4441 0.65 -0.4
5,313,412 + Echvi_4441 0.65 -0.3
5,313,413 - Echvi_4441 0.65 -0.1
5,313,413 - Echvi_4441 0.65 +0.3
5,313,427 - Echvi_4441 0.66 -0.6
5,313,427 - Echvi_4441 0.66 -0.6
5,313,429 + Echvi_4441 0.67 -0.4
5,313,430 - Echvi_4441 0.67 +0.5
5,313,478 - Echvi_4441 0.72 +0.6
5,313,524 - Echvi_4441 0.77 +0.2
5,313,580 + Echvi_4441 0.83 -0.8
5,313,649 + -0.3
5,313,649 + -0.2
5,313,650 - +1.6
5,313,689 - -0.7
5,313,689 - -1.2
5,313,689 - -1.4

Or see this region's nucleotide sequence