Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4269

Experiment: m.b. Carbenicillin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_4266 and Echvi_4267 overlap by 8 nucleotidesEchvi_4267 and Echvi_4268 are separated by 182 nucleotidesEchvi_4268 and Echvi_4269 are separated by 36 nucleotidesEchvi_4269 and Echvi_4270 are separated by 17 nucleotidesEchvi_4270 and Echvi_4271 are separated by 9 nucleotidesEchvi_4271 and Echvi_4272 overlap by 4 nucleotides Echvi_4266: Echvi_4266 - Uncharacterized conserved protein, at 5,120,613 to 5,121,113 _4266 Echvi_4267: Echvi_4267 - Predicted transcriptional regulators, at 5,121,106 to 5,121,429 _4267 Echvi_4268: Echvi_4268 - hypothetical protein, at 5,121,612 to 5,121,827 _4268 Echvi_4269: Echvi_4269 - Uncharacterized protein conserved in bacteria, at 5,121,864 to 5,122,442 _4269 Echvi_4270: Echvi_4270 - hypothetical protein, at 5,122,460 to 5,122,813 _4270 Echvi_4271: Echvi_4271 - Uncharacterized conserved protein, at 5,122,823 to 5,123,179 _4271 Echvi_4272: Echvi_4272 - hypothetical protein, at 5,123,176 to 5,123,559 _4272 Position (kb) 5121 5122 5123Strain fitness (log2 ratio) -2 -1 0 1 2 3at 5120.866 kb on + strand, within Echvi_4266at 5120.876 kb on + strand, within Echvi_4266at 5120.904 kb on + strand, within Echvi_4266at 5120.904 kb on + strand, within Echvi_4266at 5120.905 kb on - strand, within Echvi_4266at 5120.960 kb on + strand, within Echvi_4266at 5120.961 kb on - strand, within Echvi_4266at 5120.961 kb on - strand, within Echvi_4266at 5120.965 kb on + strand, within Echvi_4266at 5120.965 kb on + strand, within Echvi_4266at 5121.022 kb on - strand, within Echvi_4266at 5121.048 kb on - strand, within Echvi_4266at 5121.062 kb on + strand, within Echvi_4266at 5121.062 kb on + strand, within Echvi_4266at 5121.063 kb on - strand, within Echvi_4266at 5121.063 kb on - strand, within Echvi_4266at 5121.066 kb on - strandat 5121.066 kb on - strandat 5121.107 kb on + strandat 5121.107 kb on + strandat 5121.118 kb on - strandat 5121.118 kb on - strandat 5121.127 kb on + strandat 5121.128 kb on - strandat 5121.136 kb on + strandat 5121.139 kb on + strand, within Echvi_4267at 5121.415 kb on + strandat 5121.415 kb on + strandat 5121.415 kb on + strandat 5121.462 kb on + strandat 5121.462 kb on + strandat 5121.466 kb on + strandat 5121.491 kb on - strandat 5121.524 kb on + strandat 5121.525 kb on - strandat 5121.525 kb on - strandat 5121.586 kb on - strandat 5121.590 kb on - strandat 5121.590 kb on - strandat 5121.590 kb on - strandat 5121.625 kb on - strandat 5121.625 kb on - strandat 5121.625 kb on - strandat 5121.711 kb on - strand, within Echvi_4268at 5121.738 kb on - strand, within Echvi_4268at 5121.742 kb on + strand, within Echvi_4268at 5121.752 kb on - strand, within Echvi_4268at 5121.774 kb on + strand, within Echvi_4268at 5121.774 kb on + strand, within Echvi_4268at 5121.774 kb on + strand, within Echvi_4268at 5121.775 kb on - strand, within Echvi_4268at 5121.775 kb on - strand, within Echvi_4268at 5121.780 kb on - strand, within Echvi_4268at 5121.780 kb on - strand, within Echvi_4268at 5121.844 kb on - strandat 5121.875 kb on + strandat 5121.892 kb on - strandat 5121.894 kb on + strandat 5121.990 kb on + strand, within Echvi_4269at 5121.990 kb on + strand, within Echvi_4269at 5121.990 kb on + strand, within Echvi_4269at 5121.991 kb on - strand, within Echvi_4269at 5121.997 kb on + strand, within Echvi_4269at 5121.998 kb on - strand, within Echvi_4269at 5122.049 kb on + strand, within Echvi_4269at 5122.126 kb on + strand, within Echvi_4269at 5122.291 kb on - strand, within Echvi_4269at 5122.419 kb on + strandat 5122.485 kb on - strandat 5122.519 kb on + strand, within Echvi_4270at 5122.527 kb on + strand, within Echvi_4270at 5122.532 kb on - strand, within Echvi_4270at 5122.560 kb on - strand, within Echvi_4270at 5122.579 kb on + strand, within Echvi_4270at 5122.583 kb on + strand, within Echvi_4270at 5122.583 kb on + strand, within Echvi_4270at 5122.628 kb on + strand, within Echvi_4270at 5122.701 kb on + strand, within Echvi_4270at 5122.704 kb on + strand, within Echvi_4270at 5122.704 kb on + strand, within Echvi_4270at 5122.719 kb on - strand, within Echvi_4270at 5122.719 kb on - strand, within Echvi_4270at 5122.719 kb on - strand, within Echvi_4270at 5122.725 kb on - strand, within Echvi_4270at 5122.725 kb on - strand, within Echvi_4270at 5122.783 kb on + strandat 5122.790 kb on - strandat 5122.790 kb on - strandat 5122.802 kb on + strandat 5122.802 kb on + strandat 5122.803 kb on - strandat 5122.825 kb on - strandat 5122.825 kb on - strandat 5122.826 kb on + strandat 5122.826 kb on + strandat 5122.854 kb on - strandat 5122.897 kb on + strand, within Echvi_4271at 5122.926 kb on + strand, within Echvi_4271at 5123.026 kb on + strand, within Echvi_4271at 5123.026 kb on + strand, within Echvi_4271at 5123.027 kb on - strand, within Echvi_4271at 5123.027 kb on - strand, within Echvi_4271at 5123.028 kb on + strand, within Echvi_4271at 5123.028 kb on + strand, within Echvi_4271at 5123.028 kb on + strand, within Echvi_4271at 5123.028 kb on + strand, within Echvi_4271at 5123.029 kb on - strand, within Echvi_4271at 5123.029 kb on - strand, within Echvi_4271at 5123.029 kb on - strand, within Echvi_4271at 5123.034 kb on + strand, within Echvi_4271at 5123.035 kb on - strand, within Echvi_4271at 5123.038 kb on + strand, within Echvi_4271at 5123.080 kb on + strand, within Echvi_4271at 5123.105 kb on - strand, within Echvi_4271at 5123.112 kb on - strand, within Echvi_4271at 5123.138 kb on - strand, within Echvi_4271at 5123.154 kb on - strandat 5123.240 kb on - strand, within Echvi_4272at 5123.244 kb on + strand, within Echvi_4272at 5123.268 kb on + strand, within Echvi_4272at 5123.274 kb on + strand, within Echvi_4272at 5123.275 kb on - strand, within Echvi_4272at 5123.305 kb on - strand, within Echvi_4272at 5123.305 kb on - strand, within Echvi_4272at 5123.305 kb on - strand, within Echvi_4272at 5123.336 kb on + strand, within Echvi_4272at 5123.371 kb on - strand, within Echvi_4272at 5123.371 kb on - strand, within Echvi_4272at 5123.437 kb on + strand, within Echvi_4272at 5123.437 kb on + strand, within Echvi_4272at 5123.438 kb on - strand, within Echvi_4272at 5123.438 kb on - strand, within Echvi_4272

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml
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5,120,866 + Echvi_4266 0.50 -0.6
5,120,876 + Echvi_4266 0.52 -0.1
5,120,904 + Echvi_4266 0.58 +0.4
5,120,904 + Echvi_4266 0.58 -1.7
5,120,905 - Echvi_4266 0.58 +0.3
5,120,960 + Echvi_4266 0.69 +0.3
5,120,961 - Echvi_4266 0.69 +0.4
5,120,961 - Echvi_4266 0.69 -1.0
5,120,965 + Echvi_4266 0.70 -1.8
5,120,965 + Echvi_4266 0.70 +1.6
5,121,022 - Echvi_4266 0.82 -0.3
5,121,048 - Echvi_4266 0.87 -0.6
5,121,062 + Echvi_4266 0.90 +1.0
5,121,062 + Echvi_4266 0.90 -0.1
5,121,063 - Echvi_4266 0.90 +2.6
5,121,063 - Echvi_4266 0.90 +1.0
5,121,066 - +0.6
5,121,066 - +1.6
5,121,107 + +1.0
5,121,107 + -0.7
5,121,118 - +1.3
5,121,118 - -0.2
5,121,127 + +0.9
5,121,128 - -0.4
5,121,136 + +0.0
5,121,139 + Echvi_4267 0.10 +0.9
5,121,415 + -0.3
5,121,415 + -0.9
5,121,415 + -0.4
5,121,462 + -0.7
5,121,462 + -0.2
5,121,466 + -0.1
5,121,491 - +0.0
5,121,524 + -0.4
5,121,525 - -1.2
5,121,525 - +0.5
5,121,586 - -0.8
5,121,590 - +0.2
5,121,590 - -0.6
5,121,590 - +0.1
5,121,625 - -0.3
5,121,625 - +0.8
5,121,625 - -0.9
5,121,711 - Echvi_4268 0.46 +0.6
5,121,738 - Echvi_4268 0.58 -0.4
5,121,742 + Echvi_4268 0.60 +0.1
5,121,752 - Echvi_4268 0.65 -0.5
5,121,774 + Echvi_4268 0.75 +0.8
5,121,774 + Echvi_4268 0.75 -0.5
5,121,774 + Echvi_4268 0.75 -1.1
5,121,775 - Echvi_4268 0.75 +0.0
5,121,775 - Echvi_4268 0.75 -0.4
5,121,780 - Echvi_4268 0.78 -0.9
5,121,780 - Echvi_4268 0.78 +0.2
5,121,844 - -0.3
5,121,875 + -0.9
5,121,892 - -0.1
5,121,894 + +3.6
5,121,990 + Echvi_4269 0.22 -1.1
5,121,990 + Echvi_4269 0.22 -0.9
5,121,990 + Echvi_4269 0.22 -0.8
5,121,991 - Echvi_4269 0.22 -0.6
5,121,997 + Echvi_4269 0.23 -0.8
5,121,998 - Echvi_4269 0.23 -0.6
5,122,049 + Echvi_4269 0.32 -0.2
5,122,126 + Echvi_4269 0.45 +0.8
5,122,291 - Echvi_4269 0.74 -1.1
5,122,419 + +0.8
5,122,485 - -0.7
5,122,519 + Echvi_4270 0.17 +0.3
5,122,527 + Echvi_4270 0.19 -0.4
5,122,532 - Echvi_4270 0.20 -0.2
5,122,560 - Echvi_4270 0.28 -0.6
5,122,579 + Echvi_4270 0.34 -0.4
5,122,583 + Echvi_4270 0.35 +0.3
5,122,583 + Echvi_4270 0.35 -0.2
5,122,628 + Echvi_4270 0.47 +0.0
5,122,701 + Echvi_4270 0.68 -0.4
5,122,704 + Echvi_4270 0.69 -0.5
5,122,704 + Echvi_4270 0.69 +0.4
5,122,719 - Echvi_4270 0.73 +1.9
5,122,719 - Echvi_4270 0.73 +0.3
5,122,719 - Echvi_4270 0.73 +0.8
5,122,725 - Echvi_4270 0.75 -0.1
5,122,725 - Echvi_4270 0.75 +0.7
5,122,783 + -0.5
5,122,790 - -0.7
5,122,790 - -1.1
5,122,802 + +1.3
5,122,802 + -0.6
5,122,803 - +0.0
5,122,825 - -0.6
5,122,825 - +0.5
5,122,826 + -1.2
5,122,826 + +0.7
5,122,854 - -0.2
5,122,897 + Echvi_4271 0.21 -0.6
5,122,926 + Echvi_4271 0.29 +0.6
5,123,026 + Echvi_4271 0.57 -0.8
5,123,026 + Echvi_4271 0.57 -0.7
5,123,027 - Echvi_4271 0.57 +0.1
5,123,027 - Echvi_4271 0.57 -0.4
5,123,028 + Echvi_4271 0.57 -0.3
5,123,028 + Echvi_4271 0.57 -0.3
5,123,028 + Echvi_4271 0.57 +0.0
5,123,028 + Echvi_4271 0.57 +0.4
5,123,029 - Echvi_4271 0.58 -0.9
5,123,029 - Echvi_4271 0.58 -0.3
5,123,029 - Echvi_4271 0.58 +0.4
5,123,034 + Echvi_4271 0.59 -1.4
5,123,035 - Echvi_4271 0.59 -0.4
5,123,038 + Echvi_4271 0.60 -0.1
5,123,080 + Echvi_4271 0.72 +0.4
5,123,105 - Echvi_4271 0.79 +0.1
5,123,112 - Echvi_4271 0.81 -0.6
5,123,138 - Echvi_4271 0.88 +0.3
5,123,154 - +0.3
5,123,240 - Echvi_4272 0.17 +0.2
5,123,244 + Echvi_4272 0.18 -1.5
5,123,268 + Echvi_4272 0.24 +0.9
5,123,274 + Echvi_4272 0.26 -0.3
5,123,275 - Echvi_4272 0.26 +0.0
5,123,305 - Echvi_4272 0.34 -0.7
5,123,305 - Echvi_4272 0.34 -0.6
5,123,305 - Echvi_4272 0.34 -1.1
5,123,336 + Echvi_4272 0.42 -0.0
5,123,371 - Echvi_4272 0.51 +1.6
5,123,371 - Echvi_4272 0.51 +0.4
5,123,437 + Echvi_4272 0.68 -1.1
5,123,437 + Echvi_4272 0.68 +0.3
5,123,438 - Echvi_4272 0.68 -0.0
5,123,438 - Echvi_4272 0.68 -0.7

Or see this region's nucleotide sequence