Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3178

Experiment: m.b. Carbenicillin 0.1 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntEchvi_3176 and Echvi_3177 overlap by 14 nucleotidesEchvi_3177 and Echvi_3178 are separated by 13 nucleotidesEchvi_3178 and Echvi_3179 are separated by 12 nucleotidesEchvi_3179 and Echvi_3180 are separated by 24 nucleotides Echvi_3176: Echvi_3176 - Bacteroides conjugative transposon TraM protein, at 3,781,536 to 3,782,867 _3176 Echvi_3177: Echvi_3177 - hypothetical protein, at 3,782,854 to 3,783,141 _3177 Echvi_3178: Echvi_3178 - hypothetical protein, at 3,783,155 to 3,783,583 _3178 Echvi_3179: Echvi_3179 - Bacteroides conjugative transposon TraK protein, at 3,783,596 to 3,784,219 _3179 Echvi_3180: Echvi_3180 - Bacteroides conjugative transposon TraJ protein, at 3,784,244 to 3,785,236 _3180 Position (kb) 3783 3784Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3782.166 kb on - strand, within Echvi_3176at 3782.185 kb on - strand, within Echvi_3176at 3782.233 kb on + strand, within Echvi_3176at 3782.302 kb on - strand, within Echvi_3176at 3782.337 kb on + strand, within Echvi_3176at 3782.337 kb on + strand, within Echvi_3176at 3782.396 kb on + strand, within Echvi_3176at 3782.396 kb on + strand, within Echvi_3176at 3782.396 kb on + strand, within Echvi_3176at 3782.397 kb on - strand, within Echvi_3176at 3782.397 kb on - strand, within Echvi_3176at 3782.397 kb on - strand, within Echvi_3176at 3782.453 kb on + strand, within Echvi_3176at 3782.462 kb on + strand, within Echvi_3176at 3782.463 kb on - strand, within Echvi_3176at 3782.464 kb on + strand, within Echvi_3176at 3782.464 kb on + strand, within Echvi_3176at 3782.465 kb on - strand, within Echvi_3176at 3782.596 kb on + strand, within Echvi_3176at 3782.596 kb on + strand, within Echvi_3176at 3782.633 kb on + strand, within Echvi_3176at 3782.633 kb on + strand, within Echvi_3176at 3782.633 kb on + strand, within Echvi_3176at 3782.711 kb on + strand, within Echvi_3176at 3782.711 kb on + strand, within Echvi_3176at 3782.711 kb on + strand, within Echvi_3176at 3782.711 kb on + strand, within Echvi_3176at 3782.712 kb on - strand, within Echvi_3176at 3782.712 kb on - strand, within Echvi_3176at 3782.724 kb on + strand, within Echvi_3176at 3782.725 kb on - strand, within Echvi_3176at 3782.725 kb on - strand, within Echvi_3176at 3782.745 kb on + strandat 3782.745 kb on + strandat 3782.745 kb on + strandat 3782.746 kb on - strandat 3782.798 kb on + strandat 3782.799 kb on - strandat 3782.898 kb on + strand, within Echvi_3177at 3782.899 kb on - strand, within Echvi_3177at 3782.964 kb on + strand, within Echvi_3177at 3783.003 kb on + strand, within Echvi_3177at 3783.004 kb on - strand, within Echvi_3177at 3783.044 kb on + strand, within Echvi_3177at 3783.046 kb on + strand, within Echvi_3177at 3783.046 kb on + strand, within Echvi_3177at 3783.047 kb on - strand, within Echvi_3177at 3783.054 kb on - strand, within Echvi_3177at 3783.145 kb on - strandat 3783.156 kb on + strandat 3783.158 kb on + strandat 3783.179 kb on + strandat 3783.179 kb on + strandat 3783.254 kb on + strand, within Echvi_3178at 3783.345 kb on + strand, within Echvi_3178at 3783.359 kb on - strand, within Echvi_3178at 3783.359 kb on - strandat 3783.359 kb on - strand, within Echvi_3178at 3783.359 kb on - strand, within Echvi_3178at 3783.361 kb on + strand, within Echvi_3178at 3783.361 kb on + strand, within Echvi_3178at 3783.361 kb on + strand, within Echvi_3178at 3783.368 kb on + strand, within Echvi_3178at 3783.402 kb on + strand, within Echvi_3178at 3783.413 kb on + strand, within Echvi_3178at 3783.466 kb on - strand, within Echvi_3178at 3783.526 kb on + strand, within Echvi_3178at 3783.527 kb on - strand, within Echvi_3178at 3783.528 kb on + strand, within Echvi_3178at 3783.528 kb on + strand, within Echvi_3178at 3783.528 kb on + strand, within Echvi_3178at 3783.529 kb on - strand, within Echvi_3178at 3783.529 kb on - strand, within Echvi_3178at 3783.542 kb on - strandat 3783.584 kb on + strandat 3783.584 kb on + strandat 3783.584 kb on + strandat 3783.585 kb on - strandat 3783.706 kb on + strand, within Echvi_3179at 3783.706 kb on + strand, within Echvi_3179at 3783.780 kb on + strand, within Echvi_3179at 3783.780 kb on + strand, within Echvi_3179at 3783.852 kb on + strand, within Echvi_3179at 3783.855 kb on + strand, within Echvi_3179at 3783.879 kb on + strand, within Echvi_3179at 3783.882 kb on + strand, within Echvi_3179at 3783.883 kb on - strand, within Echvi_3179at 3783.886 kb on + strand, within Echvi_3179at 3783.887 kb on - strand, within Echvi_3179at 3783.887 kb on - strand, within Echvi_3179at 3783.961 kb on + strand, within Echvi_3179at 3784.018 kb on + strand, within Echvi_3179at 3784.120 kb on + strand, within Echvi_3179at 3784.120 kb on + strand, within Echvi_3179at 3784.120 kb on + strand, within Echvi_3179at 3784.120 kb on + strand, within Echvi_3179at 3784.120 kb on + strand, within Echvi_3179at 3784.121 kb on - strand, within Echvi_3179at 3784.121 kb on - strand, within Echvi_3179at 3784.121 kb on - strand, within Echvi_3179at 3784.123 kb on - strand, within Echvi_3179at 3784.154 kb on + strand, within Echvi_3179at 3784.164 kb on + strandat 3784.165 kb on - strandat 3784.423 kb on + strand, within Echvi_3180at 3784.423 kb on + strand, within Echvi_3180at 3784.432 kb on + strand, within Echvi_3180at 3784.434 kb on + strand, within Echvi_3180at 3784.434 kb on + strand, within Echvi_3180at 3784.434 kb on + strand, within Echvi_3180at 3784.434 kb on + strand, within Echvi_3180at 3784.434 kb on + strand, within Echvi_3180at 3784.435 kb on - strand, within Echvi_3180at 3784.435 kb on - strand, within Echvi_3180at 3784.435 kb on - strand, within Echvi_3180at 3784.556 kb on + strand, within Echvi_3180at 3784.557 kb on - strand, within Echvi_3180at 3784.561 kb on - strand, within Echvi_3180at 3784.573 kb on - strand, within Echvi_3180

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml
remove
3,782,166 - Echvi_3176 0.47 -0.8
3,782,185 - Echvi_3176 0.49 +0.8
3,782,233 + Echvi_3176 0.52 +0.8
3,782,302 - Echvi_3176 0.58 -1.5
3,782,337 + Echvi_3176 0.60 +0.4
3,782,337 + Echvi_3176 0.60 -1.5
3,782,396 + Echvi_3176 0.65 +1.0
3,782,396 + Echvi_3176 0.65 +0.0
3,782,396 + Echvi_3176 0.65 -0.9
3,782,397 - Echvi_3176 0.65 -0.3
3,782,397 - Echvi_3176 0.65 -0.3
3,782,397 - Echvi_3176 0.65 +0.4
3,782,453 + Echvi_3176 0.69 -1.2
3,782,462 + Echvi_3176 0.70 +0.6
3,782,463 - Echvi_3176 0.70 -0.8
3,782,464 + Echvi_3176 0.70 +0.0
3,782,464 + Echvi_3176 0.70 -0.6
3,782,465 - Echvi_3176 0.70 -0.0
3,782,596 + Echvi_3176 0.80 -1.0
3,782,596 + Echvi_3176 0.80 +0.0
3,782,633 + Echvi_3176 0.82 +0.5
3,782,633 + Echvi_3176 0.82 +0.7
3,782,633 + Echvi_3176 0.82 +0.5
3,782,711 + Echvi_3176 0.88 -0.0
3,782,711 + Echvi_3176 0.88 -0.8
3,782,711 + Echvi_3176 0.88 +0.2
3,782,711 + Echvi_3176 0.88 -2.8
3,782,712 - Echvi_3176 0.88 +1.5
3,782,712 - Echvi_3176 0.88 +1.2
3,782,724 + Echvi_3176 0.89 -0.3
3,782,725 - Echvi_3176 0.89 -0.2
3,782,725 - Echvi_3176 0.89 +0.3
3,782,745 + -0.1
3,782,745 + -0.6
3,782,745 + +0.7
3,782,746 - +0.4
3,782,798 + -0.1
3,782,799 - +2.0
3,782,898 + Echvi_3177 0.15 +2.2
3,782,899 - Echvi_3177 0.16 +0.3
3,782,964 + Echvi_3177 0.38 -1.1
3,783,003 + Echvi_3177 0.52 -0.1
3,783,004 - Echvi_3177 0.52 -1.9
3,783,044 + Echvi_3177 0.66 +0.4
3,783,046 + Echvi_3177 0.67 -1.9
3,783,046 + Echvi_3177 0.67 -0.1
3,783,047 - Echvi_3177 0.67 +0.3
3,783,054 - Echvi_3177 0.69 +1.2
3,783,145 - -3.2
3,783,156 + -0.7
3,783,158 + -0.9
3,783,179 + -0.8
3,783,179 + -0.4
3,783,254 + Echvi_3178 0.23 -1.1
3,783,345 + Echvi_3178 0.44 -0.1
3,783,359 - Echvi_3178 0.48 -0.3
3,783,359 - +2.5
3,783,359 - Echvi_3178 0.48 -0.2
3,783,359 - Echvi_3178 0.48 -0.4
3,783,361 + Echvi_3178 0.48 -0.8
3,783,361 + Echvi_3178 0.48 -1.1
3,783,361 + Echvi_3178 0.48 -0.2
3,783,368 + Echvi_3178 0.50 -1.8
3,783,402 + Echvi_3178 0.58 +0.5
3,783,413 + Echvi_3178 0.60 -0.3
3,783,466 - Echvi_3178 0.72 -0.0
3,783,526 + Echvi_3178 0.86 -0.4
3,783,527 - Echvi_3178 0.87 -1.3
3,783,528 + Echvi_3178 0.87 +0.3
3,783,528 + Echvi_3178 0.87 -0.2
3,783,528 + Echvi_3178 0.87 +0.1
3,783,529 - Echvi_3178 0.87 -1.1
3,783,529 - Echvi_3178 0.87 +1.5
3,783,542 - -0.5
3,783,584 + +0.1
3,783,584 + -0.6
3,783,584 + -0.6
3,783,585 - +0.0
3,783,706 + Echvi_3179 0.18 -0.6
3,783,706 + Echvi_3179 0.18 +0.6
3,783,780 + Echvi_3179 0.29 +0.1
3,783,780 + Echvi_3179 0.29 -0.3
3,783,852 + Echvi_3179 0.41 +0.5
3,783,855 + Echvi_3179 0.42 -0.4
3,783,879 + Echvi_3179 0.45 -0.2
3,783,882 + Echvi_3179 0.46 +0.5
3,783,883 - Echvi_3179 0.46 -1.7
3,783,886 + Echvi_3179 0.46 -1.6
3,783,887 - Echvi_3179 0.47 -1.3
3,783,887 - Echvi_3179 0.47 +0.3
3,783,961 + Echvi_3179 0.58 -0.3
3,784,018 + Echvi_3179 0.68 +0.0
3,784,120 + Echvi_3179 0.84 +1.5
3,784,120 + Echvi_3179 0.84 +1.5
3,784,120 + Echvi_3179 0.84 +0.9
3,784,120 + Echvi_3179 0.84 -0.9
3,784,120 + Echvi_3179 0.84 -0.6
3,784,121 - Echvi_3179 0.84 +0.4
3,784,121 - Echvi_3179 0.84 +0.3
3,784,121 - Echvi_3179 0.84 +0.9
3,784,123 - Echvi_3179 0.84 -0.8
3,784,154 + Echvi_3179 0.89 +0.4
3,784,164 + -0.7
3,784,165 - +1.5
3,784,423 + Echvi_3180 0.18 -0.3
3,784,423 + Echvi_3180 0.18 +0.0
3,784,432 + Echvi_3180 0.19 +1.2
3,784,434 + Echvi_3180 0.19 -0.8
3,784,434 + Echvi_3180 0.19 -0.1
3,784,434 + Echvi_3180 0.19 -0.1
3,784,434 + Echvi_3180 0.19 +0.3
3,784,434 + Echvi_3180 0.19 -1.8
3,784,435 - Echvi_3180 0.19 +0.1
3,784,435 - Echvi_3180 0.19 +0.1
3,784,435 - Echvi_3180 0.19 -2.6
3,784,556 + Echvi_3180 0.31 +1.5
3,784,557 - Echvi_3180 0.32 -1.8
3,784,561 - Echvi_3180 0.32 +0.9
3,784,573 - Echvi_3180 0.33 +1.5

Or see this region's nucleotide sequence