Experiment: m.b. Carbenicillin 0.1 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0826 and Echvi_0827 are separated by 54 nucleotides Echvi_0827 and Echvi_0828 are separated by 31 nucleotides Echvi_0828 and Echvi_0829 are separated by 137 nucleotides
Echvi_0826: Echvi_0826 - ribosomal protein S21, at 944,194 to 944,388
_0826
Echvi_0827: Echvi_0827 - Site-specific recombinase XerD, at 944,443 to 945,327
_0827
Echvi_0828: Echvi_0828 - ribosomal subunit interface protein, at 945,359 to 945,664
_0828
Echvi_0829: Echvi_0829 - Membrane-associated phospholipid phosphatase, at 945,802 to 946,518
_0829
Position (kb) 945
946 Strain fitness (log2 ratio) -2
-1
0
1 at 944.459 kb on + strand at 944.460 kb on - strand at 944.464 kb on + strand at 944.509 kb on + strand at 944.729 kb on + strand, within Echvi_0827 at 944.730 kb on - strand, within Echvi_0827 at 944.859 kb on - strand, within Echvi_0827 at 945.072 kb on + strand, within Echvi_0827 at 945.088 kb on + strand, within Echvi_0827 at 945.088 kb on + strand, within Echvi_0827 at 945.088 kb on + strand, within Echvi_0827 at 945.088 kb on + strand, within Echvi_0827 at 945.089 kb on - strand, within Echvi_0827 at 945.264 kb on - strand at 945.264 kb on - strand at 945.353 kb on - strand at 945.355 kb on + strand at 945.355 kb on + strand at 945.356 kb on - strand at 945.356 kb on - strand at 945.356 kb on - strand at 945.359 kb on - strand at 945.366 kb on + strand at 945.433 kb on + strand, within Echvi_0828 at 945.434 kb on - strand, within Echvi_0828 at 945.434 kb on - strand, within Echvi_0828 at 945.434 kb on - strand, within Echvi_0828 at 945.434 kb on - strand, within Echvi_0828 at 945.459 kb on + strand, within Echvi_0828 at 945.553 kb on - strand, within Echvi_0828 at 945.553 kb on - strand, within Echvi_0828 at 945.574 kb on + strand, within Echvi_0828 at 945.649 kb on - strand at 945.668 kb on + strand at 945.669 kb on - strand at 945.669 kb on - strand at 945.669 kb on - strand at 945.670 kb on + strand at 945.685 kb on + strand at 945.751 kb on + strand at 945.752 kb on - strand at 945.752 kb on - strand at 945.764 kb on - strand at 945.830 kb on - strand at 945.855 kb on + strand at 945.898 kb on + strand, within Echvi_0829 at 945.992 kb on + strand, within Echvi_0829 at 946.002 kb on - strand, within Echvi_0829 at 946.010 kb on - strand, within Echvi_0829 at 946.080 kb on - strand, within Echvi_0829 at 946.148 kb on + strand, within Echvi_0829 at 946.277 kb on + strand, within Echvi_0829 at 946.401 kb on + strand, within Echvi_0829 at 946.428 kb on - strand, within Echvi_0829 at 946.461 kb on + strand at 946.525 kb on + strand at 946.525 kb on + strand at 946.525 kb on + strand at 946.526 kb on - strand at 946.632 kb on + strand at 946.632 kb on + strand at 946.633 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml remove 944,459 + +0.9 944,460 - -0.4 944,464 + -0.3 944,509 + -1.0 944,729 + Echvi_0827 0.32 -1.3 944,730 - Echvi_0827 0.32 +0.7 944,859 - Echvi_0827 0.47 -1.3 945,072 + Echvi_0827 0.71 -1.1 945,088 + Echvi_0827 0.73 +0.3 945,088 + Echvi_0827 0.73 -1.6 945,088 + Echvi_0827 0.73 +0.4 945,088 + Echvi_0827 0.73 -1.3 945,089 - Echvi_0827 0.73 -1.6 945,264 - -1.1 945,264 - -0.9 945,353 - +0.7 945,355 + -1.5 945,355 + -1.6 945,356 - -2.6 945,356 - -0.1 945,356 - +1.0 945,359 - +0.4 945,366 + -0.9 945,433 + Echvi_0828 0.24 -2.6 945,434 - Echvi_0828 0.25 -0.8 945,434 - Echvi_0828 0.25 -0.5 945,434 - Echvi_0828 0.25 -0.6 945,434 - Echvi_0828 0.25 -1.4 945,459 + Echvi_0828 0.33 -1.3 945,553 - Echvi_0828 0.63 -0.2 945,553 - Echvi_0828 0.63 +0.9 945,574 + Echvi_0828 0.70 -0.1 945,649 - +0.1 945,668 + +1.7 945,669 - +0.1 945,669 - -0.0 945,669 - +1.3 945,670 + +0.4 945,685 + +0.7 945,751 + +0.7 945,752 - +1.0 945,752 - +1.3 945,764 - +1.2 945,830 - +0.6 945,855 + -0.8 945,898 + Echvi_0829 0.13 -0.7 945,992 + Echvi_0829 0.26 -1.3 946,002 - Echvi_0829 0.28 +0.5 946,010 - Echvi_0829 0.29 +1.7 946,080 - Echvi_0829 0.39 +0.4 946,148 + Echvi_0829 0.48 +0.7 946,277 + Echvi_0829 0.66 +1.2 946,401 + Echvi_0829 0.84 -0.8 946,428 - Echvi_0829 0.87 +0.9 946,461 + -1.2 946,525 + +0.7 946,525 + +0.5 946,525 + -0.6 946,526 - -0.2 946,632 + -0.5 946,632 + +0.1 946,633 - -0.5
Or see this region's nucleotide sequence