Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0808

Experiment: m.b. Carbenicillin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0807 and Echvi_0808 are separated by 348 nucleotidesEchvi_0808 and Echvi_0809 are separated by 396 nucleotides Echvi_0807: Echvi_0807 - transcription termination factor Rho, at 920,207 to 921,988 _0807 Echvi_0808: Echvi_0808 - hypothetical protein, at 922,337 to 924,913 _0808 Echvi_0809: Echvi_0809 - Transposase and inactivated derivatives, at 925,310 to 926,299 _0809 Position (kb) 922 923 924 925Strain fitness (log2 ratio) -2 -1 0 1 2 3at 922.004 kb on + strandat 922.047 kb on + strandat 922.142 kb on + strandat 922.142 kb on + strandat 922.173 kb on + strandat 922.173 kb on + strandat 922.173 kb on + strandat 922.176 kb on + strandat 922.177 kb on - strandat 922.185 kb on + strandat 922.186 kb on - strandat 922.188 kb on + strandat 922.188 kb on + strandat 922.189 kb on - strandat 922.189 kb on - strandat 922.189 kb on - strandat 922.262 kb on + strandat 922.262 kb on + strandat 922.263 kb on - strandat 922.308 kb on - strandat 922.308 kb on - strandat 922.308 kb on - strandat 922.311 kb on + strandat 922.311 kb on + strandat 922.312 kb on - strandat 922.312 kb on - strandat 922.312 kb on - strandat 922.312 kb on - strandat 922.323 kb on + strandat 922.324 kb on - strandat 922.324 kb on - strandat 922.324 kb on - strandat 922.324 kb on - strandat 922.324 kb on - strandat 922.324 kb on - strandat 922.329 kb on + strandat 922.330 kb on - strandat 922.330 kb on - strandat 922.386 kb on + strandat 922.507 kb on + strandat 922.508 kb on - strandat 922.508 kb on - strandat 922.508 kb on - strandat 922.536 kb on - strandat 922.565 kb on + strandat 922.566 kb on - strandat 922.566 kb on - strandat 922.586 kb on + strandat 922.587 kb on - strandat 922.592 kb on + strandat 922.593 kb on - strandat 922.593 kb on - strandat 922.639 kb on - strand, within Echvi_0808at 922.639 kb on - strand, within Echvi_0808at 922.639 kb on - strand, within Echvi_0808at 922.639 kb on - strand, within Echvi_0808at 922.658 kb on + strand, within Echvi_0808at 922.659 kb on - strand, within Echvi_0808at 922.659 kb on - strand, within Echvi_0808at 922.660 kb on + strand, within Echvi_0808at 922.661 kb on - strand, within Echvi_0808at 922.661 kb on - strand, within Echvi_0808at 922.661 kb on - strand, within Echvi_0808at 922.661 kb on - strand, within Echvi_0808at 922.661 kb on - strandat 922.661 kb on - strand, within Echvi_0808at 922.661 kb on - strand, within Echvi_0808at 922.661 kb on - strand, within Echvi_0808at 922.664 kb on + strand, within Echvi_0808at 922.665 kb on - strand, within Echvi_0808at 922.665 kb on - strand, within Echvi_0808at 922.668 kb on - strand, within Echvi_0808at 922.669 kb on + strand, within Echvi_0808at 922.670 kb on - strand, within Echvi_0808at 922.673 kb on + strand, within Echvi_0808at 922.687 kb on + strand, within Echvi_0808at 922.693 kb on - strand, within Echvi_0808at 922.703 kb on + strand, within Echvi_0808at 922.703 kb on + strand, within Echvi_0808at 922.703 kb on + strand, within Echvi_0808at 922.712 kb on - strand, within Echvi_0808at 922.735 kb on + strand, within Echvi_0808at 922.766 kb on + strand, within Echvi_0808at 922.767 kb on - strand, within Echvi_0808at 922.769 kb on + strand, within Echvi_0808at 922.769 kb on + strand, within Echvi_0808at 922.769 kb on + strand, within Echvi_0808at 922.770 kb on - strand, within Echvi_0808at 922.770 kb on - strand, within Echvi_0808at 922.770 kb on - strand, within Echvi_0808at 922.770 kb on - strand, within Echvi_0808at 922.795 kb on - strand, within Echvi_0808at 922.797 kb on + strand, within Echvi_0808at 922.797 kb on + strand, within Echvi_0808at 922.798 kb on - strand, within Echvi_0808at 922.798 kb on - strand, within Echvi_0808at 922.798 kb on - strand, within Echvi_0808at 922.798 kb on - strand, within Echvi_0808at 922.845 kb on + strand, within Echvi_0808at 922.846 kb on - strand, within Echvi_0808at 922.846 kb on - strand, within Echvi_0808at 922.846 kb on - strand, within Echvi_0808at 922.848 kb on + strand, within Echvi_0808at 922.849 kb on - strand, within Echvi_0808at 922.871 kb on + strand, within Echvi_0808at 922.872 kb on - strand, within Echvi_0808at 922.885 kb on + strand, within Echvi_0808at 922.888 kb on + strand, within Echvi_0808at 922.889 kb on - strand, within Echvi_0808at 922.889 kb on - strand, within Echvi_0808at 922.889 kb on - strand, within Echvi_0808at 923.021 kb on + strand, within Echvi_0808at 923.022 kb on - strand, within Echvi_0808at 923.022 kb on - strand, within Echvi_0808at 923.031 kb on - strand, within Echvi_0808at 923.095 kb on + strand, within Echvi_0808at 923.109 kb on - strand, within Echvi_0808at 923.109 kb on - strand, within Echvi_0808at 923.109 kb on - strand, within Echvi_0808at 923.150 kb on + strand, within Echvi_0808at 923.150 kb on + strand, within Echvi_0808at 923.151 kb on - strand, within Echvi_0808at 923.151 kb on - strand, within Echvi_0808at 923.151 kb on - strand, within Echvi_0808at 923.151 kb on - strand, within Echvi_0808at 923.151 kb on - strand, within Echvi_0808at 923.257 kb on + strand, within Echvi_0808at 923.341 kb on - strand, within Echvi_0808at 923.369 kb on + strand, within Echvi_0808at 923.369 kb on + strand, within Echvi_0808at 923.370 kb on - strand, within Echvi_0808at 923.416 kb on + strand, within Echvi_0808at 923.419 kb on + strand, within Echvi_0808at 923.419 kb on + strand, within Echvi_0808at 923.420 kb on - strand, within Echvi_0808at 923.461 kb on - strand, within Echvi_0808at 923.477 kb on + strand, within Echvi_0808at 923.477 kb on + strand, within Echvi_0808at 923.478 kb on - strand, within Echvi_0808at 923.490 kb on + strand, within Echvi_0808at 923.490 kb on + strand, within Echvi_0808at 923.531 kb on + strand, within Echvi_0808at 923.531 kb on + strand, within Echvi_0808at 923.531 kb on + strand, within Echvi_0808at 923.532 kb on - strand, within Echvi_0808at 923.533 kb on + strand, within Echvi_0808at 923.534 kb on - strand, within Echvi_0808at 923.534 kb on - strand, within Echvi_0808at 923.534 kb on - strand, within Echvi_0808at 923.540 kb on + strand, within Echvi_0808at 923.593 kb on - strand, within Echvi_0808at 923.598 kb on + strand, within Echvi_0808at 923.598 kb on + strand, within Echvi_0808at 923.598 kb on + strand, within Echvi_0808at 923.640 kb on - strand, within Echvi_0808at 923.640 kb on - strand, within Echvi_0808at 923.704 kb on + strand, within Echvi_0808at 923.705 kb on - strand, within Echvi_0808at 923.712 kb on - strand, within Echvi_0808at 923.833 kb on + strand, within Echvi_0808at 923.875 kb on + strand, within Echvi_0808at 923.875 kb on + strand, within Echvi_0808at 923.876 kb on - strand, within Echvi_0808at 923.876 kb on - strand, within Echvi_0808at 923.900 kb on + strand, within Echvi_0808at 923.937 kb on - strand, within Echvi_0808at 923.960 kb on + strand, within Echvi_0808at 923.992 kb on + strand, within Echvi_0808at 923.992 kb on + strand, within Echvi_0808at 923.993 kb on - strand, within Echvi_0808at 923.993 kb on - strand, within Echvi_0808at 923.993 kb on - strand, within Echvi_0808at 923.993 kb on - strand, within Echvi_0808at 924.007 kb on + strand, within Echvi_0808at 924.008 kb on - strand, within Echvi_0808at 924.092 kb on + strand, within Echvi_0808at 924.093 kb on - strand, within Echvi_0808at 924.099 kb on + strand, within Echvi_0808at 924.100 kb on - strand, within Echvi_0808at 924.100 kb on - strand, within Echvi_0808at 924.358 kb on - strand, within Echvi_0808at 924.358 kb on - strand, within Echvi_0808at 924.362 kb on + strand, within Echvi_0808at 924.362 kb on + strand, within Echvi_0808at 924.483 kb on + strand, within Echvi_0808at 924.484 kb on - strand, within Echvi_0808at 924.518 kb on + strand, within Echvi_0808at 924.519 kb on - strand, within Echvi_0808at 924.529 kb on - strand, within Echvi_0808at 924.560 kb on + strand, within Echvi_0808at 924.560 kb on + strand, within Echvi_0808at 924.560 kb on + strand, within Echvi_0808at 924.561 kb on - strand, within Echvi_0808at 924.561 kb on - strand, within Echvi_0808at 924.563 kb on + strand, within Echvi_0808at 924.564 kb on - strand, within Echvi_0808at 924.564 kb on - strand, within Echvi_0808at 924.564 kb on - strand, within Echvi_0808at 924.567 kb on - strand, within Echvi_0808at 924.595 kb on + strand, within Echvi_0808at 924.596 kb on - strand, within Echvi_0808at 924.596 kb on - strand, within Echvi_0808at 924.630 kb on + strand, within Echvi_0808at 924.702 kb on + strandat 924.726 kb on - strandat 924.726 kb on - strandat 924.727 kb on + strandat 924.728 kb on - strandat 924.728 kb on - strandat 924.742 kb on - strandat 924.757 kb on - strandat 924.757 kb on - strandat 924.844 kb on + strandat 924.891 kb on - strandat 924.922 kb on - strandat 924.922 kb on - strandat 924.922 kb on - strandat 924.926 kb on - strandat 924.931 kb on - strandat 924.931 kb on - strandat 924.931 kb on - strandat 925.006 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml
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922,004 + +0.3
922,047 + -0.7
922,142 + -1.5
922,142 + +0.1
922,173 + +2.1
922,173 + +0.9
922,173 + -1.8
922,176 + +0.9
922,177 - +0.6
922,185 + -0.3
922,186 - +1.1
922,188 + -0.1
922,188 + -0.1
922,189 - -0.2
922,189 - -0.7
922,189 - +0.5
922,262 + +2.7
922,262 + -0.4
922,263 - +0.1
922,308 - -0.6
922,308 - -0.1
922,308 - +1.3
922,311 + -0.6
922,311 + -1.1
922,312 - -0.0
922,312 - +0.5
922,312 - +0.3
922,312 - +0.3
922,323 + -0.4
922,324 - -2.2
922,324 - +1.0
922,324 - +0.6
922,324 - +1.3
922,324 - +0.3
922,324 - +0.1
922,329 + -0.6
922,330 - +1.7
922,330 - -0.0
922,386 + -1.3
922,507 + -0.9
922,508 - -0.3
922,508 - +0.4
922,508 - +0.4
922,536 - +0.3
922,565 + +0.2
922,566 - +0.4
922,566 - +3.5
922,586 + -0.0
922,587 - +0.2
922,592 + +0.9
922,593 - +0.7
922,593 - +0.1
922,639 - Echvi_0808 0.12 -2.2
922,639 - Echvi_0808 0.12 +0.5
922,639 - Echvi_0808 0.12 +0.1
922,639 - Echvi_0808 0.12 -0.8
922,658 + Echvi_0808 0.12 -1.0
922,659 - Echvi_0808 0.12 +2.0
922,659 - Echvi_0808 0.12 +0.9
922,660 + Echvi_0808 0.13 +0.0
922,661 - Echvi_0808 0.13 -0.2
922,661 - Echvi_0808 0.13 -0.1
922,661 - Echvi_0808 0.13 -0.1
922,661 - Echvi_0808 0.13 +0.1
922,661 - +2.3
922,661 - Echvi_0808 0.13 +0.9
922,661 - Echvi_0808 0.13 +0.4
922,661 - Echvi_0808 0.13 +1.7
922,664 + Echvi_0808 0.13 -0.6
922,665 - Echvi_0808 0.13 -0.7
922,665 - Echvi_0808 0.13 +1.4
922,668 - Echvi_0808 0.13 -0.5
922,669 + Echvi_0808 0.13 +2.1
922,670 - Echvi_0808 0.13 -0.6
922,673 + Echvi_0808 0.13 -0.8
922,687 + Echvi_0808 0.14 -1.5
922,693 - Echvi_0808 0.14 +0.9
922,703 + Echvi_0808 0.14 +1.0
922,703 + Echvi_0808 0.14 +1.7
922,703 + Echvi_0808 0.14 -1.2
922,712 - Echvi_0808 0.15 +0.4
922,735 + Echvi_0808 0.15 +0.1
922,766 + Echvi_0808 0.17 -0.5
922,767 - Echvi_0808 0.17 -0.2
922,769 + Echvi_0808 0.17 +0.1
922,769 + Echvi_0808 0.17 +0.1
922,769 + Echvi_0808 0.17 +0.4
922,770 - Echvi_0808 0.17 -0.6
922,770 - Echvi_0808 0.17 +2.3
922,770 - Echvi_0808 0.17 -0.6
922,770 - Echvi_0808 0.17 +0.3
922,795 - Echvi_0808 0.18 +0.4
922,797 + Echvi_0808 0.18 -0.0
922,797 + Echvi_0808 0.18 +1.7
922,798 - Echvi_0808 0.18 +1.1
922,798 - Echvi_0808 0.18 -0.3
922,798 - Echvi_0808 0.18 +1.2
922,798 - Echvi_0808 0.18 -1.3
922,845 + Echvi_0808 0.20 -2.1
922,846 - Echvi_0808 0.20 +0.1
922,846 - Echvi_0808 0.20 -0.0
922,846 - Echvi_0808 0.20 -0.5
922,848 + Echvi_0808 0.20 +0.4
922,849 - Echvi_0808 0.20 +2.5
922,871 + Echvi_0808 0.21 +1.1
922,872 - Echvi_0808 0.21 +0.5
922,885 + Echvi_0808 0.21 -0.9
922,888 + Echvi_0808 0.21 -0.3
922,889 - Echvi_0808 0.21 +0.4
922,889 - Echvi_0808 0.21 +1.3
922,889 - Echvi_0808 0.21 +0.8
923,021 + Echvi_0808 0.27 -0.5
923,022 - Echvi_0808 0.27 +1.1
923,022 - Echvi_0808 0.27 -0.2
923,031 - Echvi_0808 0.27 +0.3
923,095 + Echvi_0808 0.29 -0.5
923,109 - Echvi_0808 0.30 -0.1
923,109 - Echvi_0808 0.30 -0.6
923,109 - Echvi_0808 0.30 -2.0
923,150 + Echvi_0808 0.32 -0.3
923,150 + Echvi_0808 0.32 -1.0
923,151 - Echvi_0808 0.32 +0.3
923,151 - Echvi_0808 0.32 +0.9
923,151 - Echvi_0808 0.32 +0.8
923,151 - Echvi_0808 0.32 +0.6
923,151 - Echvi_0808 0.32 -0.0
923,257 + Echvi_0808 0.36 -2.0
923,341 - Echvi_0808 0.39 +2.7
923,369 + Echvi_0808 0.40 +2.7
923,369 + Echvi_0808 0.40 +0.3
923,370 - Echvi_0808 0.40 +0.5
923,416 + Echvi_0808 0.42 -0.2
923,419 + Echvi_0808 0.42 +0.4
923,419 + Echvi_0808 0.42 -0.1
923,420 - Echvi_0808 0.42 -0.3
923,461 - Echvi_0808 0.44 -0.3
923,477 + Echvi_0808 0.44 -1.6
923,477 + Echvi_0808 0.44 -0.5
923,478 - Echvi_0808 0.44 +1.0
923,490 + Echvi_0808 0.45 -0.1
923,490 + Echvi_0808 0.45 -1.3
923,531 + Echvi_0808 0.46 +0.4
923,531 + Echvi_0808 0.46 +0.7
923,531 + Echvi_0808 0.46 -1.1
923,532 - Echvi_0808 0.46 +0.1
923,533 + Echvi_0808 0.46 -0.4
923,534 - Echvi_0808 0.46 +0.8
923,534 - Echvi_0808 0.46 +3.0
923,534 - Echvi_0808 0.46 -2.3
923,540 + Echvi_0808 0.47 -1.2
923,593 - Echvi_0808 0.49 -1.5
923,598 + Echvi_0808 0.49 +1.0
923,598 + Echvi_0808 0.49 +0.5
923,598 + Echvi_0808 0.49 +0.3
923,640 - Echvi_0808 0.51 -1.2
923,640 - Echvi_0808 0.51 -0.1
923,704 + Echvi_0808 0.53 +0.4
923,705 - Echvi_0808 0.53 +1.9
923,712 - Echvi_0808 0.53 +0.1
923,833 + Echvi_0808 0.58 +0.9
923,875 + Echvi_0808 0.60 +1.7
923,875 + Echvi_0808 0.60 -0.6
923,876 - Echvi_0808 0.60 -0.2
923,876 - Echvi_0808 0.60 -0.8
923,900 + Echvi_0808 0.61 +0.1
923,937 - Echvi_0808 0.62 -1.2
923,960 + Echvi_0808 0.63 -1.3
923,992 + Echvi_0808 0.64 -0.4
923,992 + Echvi_0808 0.64 -0.0
923,993 - Echvi_0808 0.64 +0.7
923,993 - Echvi_0808 0.64 +1.7
923,993 - Echvi_0808 0.64 +0.4
923,993 - Echvi_0808 0.64 -0.2
924,007 + Echvi_0808 0.65 -0.8
924,008 - Echvi_0808 0.65 -1.6
924,092 + Echvi_0808 0.68 -0.2
924,093 - Echvi_0808 0.68 -1.2
924,099 + Echvi_0808 0.68 -0.5
924,100 - Echvi_0808 0.68 -0.0
924,100 - Echvi_0808 0.68 +0.4
924,358 - Echvi_0808 0.78 +0.1
924,358 - Echvi_0808 0.78 -0.1
924,362 + Echvi_0808 0.79 -0.3
924,362 + Echvi_0808 0.79 +0.5
924,483 + Echvi_0808 0.83 -0.5
924,484 - Echvi_0808 0.83 -0.4
924,518 + Echvi_0808 0.85 -0.1
924,519 - Echvi_0808 0.85 -0.8
924,529 - Echvi_0808 0.85 +0.2
924,560 + Echvi_0808 0.86 -1.1
924,560 + Echvi_0808 0.86 -0.4
924,560 + Echvi_0808 0.86 -1.3
924,561 - Echvi_0808 0.86 -0.2
924,561 - Echvi_0808 0.86 -0.3
924,563 + Echvi_0808 0.86 +0.1
924,564 - Echvi_0808 0.86 -0.2
924,564 - Echvi_0808 0.86 +0.2
924,564 - Echvi_0808 0.86 -0.3
924,567 - Echvi_0808 0.87 +0.2
924,595 + Echvi_0808 0.88 -0.8
924,596 - Echvi_0808 0.88 -0.0
924,596 - Echvi_0808 0.88 -0.5
924,630 + Echvi_0808 0.89 +0.5
924,702 + +0.5
924,726 - +1.1
924,726 - +1.4
924,727 + -0.1
924,728 - +0.7
924,728 - +3.3
924,742 - +0.8
924,757 - -0.2
924,757 - +0.9
924,844 + +1.9
924,891 - +0.1
924,922 - -0.7
924,922 - -0.2
924,922 - +0.5
924,926 - +0.0
924,931 - +0.3
924,931 - -0.2
924,931 - +0.3
925,006 - -0.8

Or see this region's nucleotide sequence