Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0778

Experiment: m.b. Carbenicillin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0777 and Echvi_0778 are separated by 88 nucleotidesEchvi_0778 and Echvi_0779 are separated by 185 nucleotidesEchvi_0779 and Echvi_0780 overlap by 8 nucleotides Echvi_0777: Echvi_0777 - N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA, at 875,142 to 876,281 _0777 Echvi_0778: Echvi_0778 - Beta-glucosidase-related glycosidases, at 876,370 to 879,342 _0778 Echvi_0779: Echvi_0779 - hypothetical protein, at 879,528 to 879,944 _0779 Echvi_0780: Echvi_0780 - DNA mismatch repair protein MutL, at 879,937 to 881,808 _0780 Position (kb) 876 877 878 879 880Strain fitness (log2 ratio) -1 0 1 2 3at 875.415 kb on + strand, within Echvi_0777at 876.117 kb on + strand, within Echvi_0777at 876.170 kb on + strandat 876.171 kb on - strandat 876.173 kb on - strandat 876.176 kb on + strandat 876.235 kb on - strandat 876.255 kb on - strandat 876.325 kb on + strandat 876.325 kb on + strandat 876.325 kb on + strandat 876.325 kb on + strandat 876.325 kb on + strandat 876.325 kb on + strandat 876.326 kb on - strandat 876.326 kb on - strandat 876.327 kb on + strandat 876.376 kb on - strandat 876.391 kb on + strandat 876.391 kb on + strandat 876.391 kb on + strandat 876.391 kb on + strandat 876.392 kb on - strandat 876.392 kb on - strandat 876.421 kb on - strandat 876.508 kb on + strandat 876.532 kb on - strandat 876.543 kb on + strandat 876.679 kb on + strand, within Echvi_0778at 876.680 kb on - strand, within Echvi_0778at 876.690 kb on - strand, within Echvi_0778at 876.703 kb on + strand, within Echvi_0778at 876.703 kb on + strand, within Echvi_0778at 876.776 kb on + strand, within Echvi_0778at 876.776 kb on + strand, within Echvi_0778at 876.776 kb on + strand, within Echvi_0778at 876.777 kb on - strand, within Echvi_0778at 876.869 kb on + strand, within Echvi_0778at 876.869 kb on + strand, within Echvi_0778at 876.870 kb on - strand, within Echvi_0778at 876.870 kb on - strand, within Echvi_0778at 876.870 kb on - strand, within Echvi_0778at 876.899 kb on + strand, within Echvi_0778at 876.900 kb on - strand, within Echvi_0778at 876.900 kb on - strand, within Echvi_0778at 876.955 kb on + strand, within Echvi_0778at 876.959 kb on - strand, within Echvi_0778at 876.986 kb on + strand, within Echvi_0778at 876.986 kb on + strand, within Echvi_0778at 876.986 kb on + strand, within Echvi_0778at 876.986 kb on + strand, within Echvi_0778at 876.986 kb on + strand, within Echvi_0778at 876.987 kb on - strand, within Echvi_0778at 876.987 kb on - strand, within Echvi_0778at 876.987 kb on - strand, within Echvi_0778at 876.987 kb on - strand, within Echvi_0778at 876.987 kb on - strand, within Echvi_0778at 876.987 kb on - strand, within Echvi_0778at 877.005 kb on - strand, within Echvi_0778at 877.008 kb on + strand, within Echvi_0778at 877.009 kb on - strand, within Echvi_0778at 877.009 kb on - strand, within Echvi_0778at 877.011 kb on - strand, within Echvi_0778at 877.011 kb on - strand, within Echvi_0778at 877.097 kb on + strand, within Echvi_0778at 877.098 kb on - strand, within Echvi_0778at 877.098 kb on - strand, within Echvi_0778at 877.098 kb on - strand, within Echvi_0778at 877.185 kb on + strand, within Echvi_0778at 877.186 kb on - strand, within Echvi_0778at 877.186 kb on - strand, within Echvi_0778at 877.186 kb on - strand, within Echvi_0778at 877.188 kb on + strand, within Echvi_0778at 877.188 kb on + strand, within Echvi_0778at 877.188 kb on + strand, within Echvi_0778at 877.188 kb on + strand, within Echvi_0778at 877.188 kb on + strand, within Echvi_0778at 877.189 kb on - strand, within Echvi_0778at 877.189 kb on - strand, within Echvi_0778at 877.189 kb on - strand, within Echvi_0778at 877.189 kb on - strand, within Echvi_0778at 877.189 kb on - strand, within Echvi_0778at 877.189 kb on - strand, within Echvi_0778at 877.191 kb on - strand, within Echvi_0778at 877.246 kb on - strand, within Echvi_0778at 877.257 kb on + strand, within Echvi_0778at 877.283 kb on + strand, within Echvi_0778at 877.288 kb on - strand, within Echvi_0778at 877.288 kb on - strand, within Echvi_0778at 877.383 kb on - strand, within Echvi_0778at 877.455 kb on + strand, within Echvi_0778at 877.464 kb on + strand, within Echvi_0778at 877.464 kb on + strand, within Echvi_0778at 877.464 kb on + strand, within Echvi_0778at 877.465 kb on - strand, within Echvi_0778at 877.465 kb on - strandat 877.468 kb on + strand, within Echvi_0778at 877.468 kb on + strand, within Echvi_0778at 877.469 kb on - strand, within Echvi_0778at 877.469 kb on - strand, within Echvi_0778at 877.475 kb on - strand, within Echvi_0778at 877.533 kb on + strand, within Echvi_0778at 877.533 kb on + strand, within Echvi_0778at 877.571 kb on + strand, within Echvi_0778at 877.575 kb on + strand, within Echvi_0778at 877.575 kb on + strand, within Echvi_0778at 877.575 kb on + strand, within Echvi_0778at 877.575 kb on + strand, within Echvi_0778at 877.575 kb on + strand, within Echvi_0778at 877.576 kb on - strand, within Echvi_0778at 877.576 kb on - strand, within Echvi_0778at 877.576 kb on - strand, within Echvi_0778at 877.576 kb on - strand, within Echvi_0778at 877.576 kb on - strand, within Echvi_0778at 877.576 kb on - strand, within Echvi_0778at 877.578 kb on - strand, within Echvi_0778at 877.636 kb on + strand, within Echvi_0778at 877.637 kb on - strand, within Echvi_0778at 877.704 kb on + strand, within Echvi_0778at 877.754 kb on + strand, within Echvi_0778at 877.754 kb on + strand, within Echvi_0778at 877.826 kb on + strand, within Echvi_0778at 877.826 kb on + strand, within Echvi_0778at 877.826 kb on + strand, within Echvi_0778at 877.827 kb on - strand, within Echvi_0778at 877.827 kb on - strand, within Echvi_0778at 877.827 kb on - strand, within Echvi_0778at 877.827 kb on - strand, within Echvi_0778at 877.860 kb on + strand, within Echvi_0778at 877.944 kb on + strand, within Echvi_0778at 877.944 kb on + strand, within Echvi_0778at 877.947 kb on + strand, within Echvi_0778at 877.947 kb on + strand, within Echvi_0778at 877.948 kb on - strand, within Echvi_0778at 877.965 kb on + strand, within Echvi_0778at 877.966 kb on - strand, within Echvi_0778at 877.966 kb on - strand, within Echvi_0778at 877.966 kb on - strand, within Echvi_0778at 877.966 kb on - strand, within Echvi_0778at 877.966 kb on - strand, within Echvi_0778at 877.967 kb on + strand, within Echvi_0778at 877.997 kb on + strand, within Echvi_0778at 877.997 kb on + strand, within Echvi_0778at 878.115 kb on - strand, within Echvi_0778at 878.126 kb on - strand, within Echvi_0778at 878.144 kb on + strand, within Echvi_0778at 878.144 kb on + strand, within Echvi_0778at 878.145 kb on - strand, within Echvi_0778at 878.179 kb on + strand, within Echvi_0778at 878.180 kb on - strand, within Echvi_0778at 878.194 kb on - strand, within Echvi_0778at 878.221 kb on + strand, within Echvi_0778at 878.221 kb on + strand, within Echvi_0778at 878.221 kb on + strand, within Echvi_0778at 878.321 kb on + strand, within Echvi_0778at 878.321 kb on + strand, within Echvi_0778at 878.484 kb on + strand, within Echvi_0778at 878.503 kb on - strand, within Echvi_0778at 878.574 kb on + strand, within Echvi_0778at 878.628 kb on + strand, within Echvi_0778at 878.629 kb on - strand, within Echvi_0778at 878.629 kb on - strand, within Echvi_0778at 878.629 kb on - strand, within Echvi_0778at 878.712 kb on + strand, within Echvi_0778at 878.712 kb on + strand, within Echvi_0778at 878.713 kb on - strand, within Echvi_0778at 878.713 kb on - strand, within Echvi_0778at 878.715 kb on - strand, within Echvi_0778at 878.873 kb on + strand, within Echvi_0778at 878.874 kb on - strand, within Echvi_0778at 878.874 kb on - strand, within Echvi_0778at 879.005 kb on + strand, within Echvi_0778at 879.006 kb on - strand, within Echvi_0778at 879.008 kb on + strand, within Echvi_0778at 879.009 kb on - strand, within Echvi_0778at 879.009 kb on - strand, within Echvi_0778at 879.009 kb on - strand, within Echvi_0778at 879.052 kb on + strandat 879.212 kb on + strandat 879.213 kb on - strandat 879.213 kb on - strandat 879.213 kb on - strandat 879.275 kb on - strandat 879.275 kb on - strandat 879.366 kb on + strandat 879.367 kb on - strandat 879.378 kb on + strandat 879.386 kb on + strandat 879.429 kb on + strandat 879.435 kb on + strandat 879.447 kb on + strandat 879.447 kb on + strandat 879.447 kb on + strandat 879.456 kb on + strandat 879.456 kb on + strandat 879.491 kb on + strandat 879.491 kb on + strandat 879.491 kb on + strandat 879.491 kb on + strandat 879.497 kb on + strandat 879.497 kb on + strandat 879.502 kb on + strandat 879.502 kb on + strandat 879.502 kb on + strandat 879.502 kb on + strandat 879.544 kb on + strandat 879.591 kb on + strand, within Echvi_0779at 879.686 kb on + strand, within Echvi_0779at 879.686 kb on + strand, within Echvi_0779at 879.737 kb on + strand, within Echvi_0779at 879.846 kb on + strand, within Echvi_0779at 879.846 kb on + strand, within Echvi_0779at 879.846 kb on + strand, within Echvi_0779at 879.865 kb on + strand, within Echvi_0779at 879.865 kb on + strand, within Echvi_0779at 879.866 kb on - strand, within Echvi_0779at 879.866 kb on - strand, within Echvi_0779at 879.867 kb on + strand, within Echvi_0779at 879.867 kb on + strand, within Echvi_0779at 879.867 kb on + strand, within Echvi_0779at 879.868 kb on - strand, within Echvi_0779at 879.879 kb on + strand, within Echvi_0779at 879.914 kb on + strandat 879.914 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml
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875,415 + Echvi_0777 0.24 -1.2
876,117 + Echvi_0777 0.86 +1.3
876,170 + +0.3
876,171 - +0.7
876,173 - +0.7
876,176 + +1.0
876,235 - +2.7
876,255 - -0.1
876,325 + +1.7
876,325 + +0.2
876,325 + -0.8
876,325 + +0.9
876,325 + -0.8
876,325 + +0.8
876,326 - +0.4
876,326 - +0.3
876,327 + +0.1
876,376 - +0.7
876,391 + +0.5
876,391 + +0.2
876,391 + -0.2
876,391 + -0.7
876,392 - +0.8
876,392 - +0.8
876,421 - -0.7
876,508 + +0.7
876,532 - +0.6
876,543 + +0.9
876,679 + Echvi_0778 0.10 -0.5
876,680 - Echvi_0778 0.10 -0.3
876,690 - Echvi_0778 0.11 -0.3
876,703 + Echvi_0778 0.11 +0.9
876,703 + Echvi_0778 0.11 +0.1
876,776 + Echvi_0778 0.14 +0.2
876,776 + Echvi_0778 0.14 +1.3
876,776 + Echvi_0778 0.14 +0.7
876,777 - Echvi_0778 0.14 +0.6
876,869 + Echvi_0778 0.17 +0.9
876,869 + Echvi_0778 0.17 +0.6
876,870 - Echvi_0778 0.17 +0.3
876,870 - Echvi_0778 0.17 +0.5
876,870 - Echvi_0778 0.17 +0.8
876,899 + Echvi_0778 0.18 -0.3
876,900 - Echvi_0778 0.18 +1.1
876,900 - Echvi_0778 0.18 +1.2
876,955 + Echvi_0778 0.20 +0.8
876,959 - Echvi_0778 0.20 +0.7
876,986 + Echvi_0778 0.21 +1.4
876,986 + Echvi_0778 0.21 +0.6
876,986 + Echvi_0778 0.21 +0.4
876,986 + Echvi_0778 0.21 +0.1
876,986 + Echvi_0778 0.21 +0.4
876,987 - Echvi_0778 0.21 -0.8
876,987 - Echvi_0778 0.21 +1.1
876,987 - Echvi_0778 0.21 +1.3
876,987 - Echvi_0778 0.21 +1.0
876,987 - Echvi_0778 0.21 +0.5
876,987 - Echvi_0778 0.21 -1.1
877,005 - Echvi_0778 0.21 +0.2
877,008 + Echvi_0778 0.21 +1.7
877,009 - Echvi_0778 0.21 -0.3
877,009 - Echvi_0778 0.21 -1.0
877,011 - Echvi_0778 0.22 +0.9
877,011 - Echvi_0778 0.22 +0.8
877,097 + Echvi_0778 0.24 +0.1
877,098 - Echvi_0778 0.24 +1.0
877,098 - Echvi_0778 0.24 +0.0
877,098 - Echvi_0778 0.24 -0.9
877,185 + Echvi_0778 0.27 +0.8
877,186 - Echvi_0778 0.27 +1.0
877,186 - Echvi_0778 0.27 -0.5
877,186 - Echvi_0778 0.27 +0.4
877,188 + Echvi_0778 0.28 +1.1
877,188 + Echvi_0778 0.28 -1.5
877,188 + Echvi_0778 0.28 +0.5
877,188 + Echvi_0778 0.28 -0.1
877,188 + Echvi_0778 0.28 +0.2
877,189 - Echvi_0778 0.28 +1.0
877,189 - Echvi_0778 0.28 +0.3
877,189 - Echvi_0778 0.28 -0.6
877,189 - Echvi_0778 0.28 +2.1
877,189 - Echvi_0778 0.28 +0.6
877,189 - Echvi_0778 0.28 +0.7
877,191 - Echvi_0778 0.28 +0.3
877,246 - Echvi_0778 0.29 +0.7
877,257 + Echvi_0778 0.30 +0.7
877,283 + Echvi_0778 0.31 +1.7
877,288 - Echvi_0778 0.31 -0.3
877,288 - Echvi_0778 0.31 +0.7
877,383 - Echvi_0778 0.34 +1.1
877,455 + Echvi_0778 0.36 +1.7
877,464 + Echvi_0778 0.37 +0.1
877,464 + Echvi_0778 0.37 -1.2
877,464 + Echvi_0778 0.37 +1.0
877,465 - Echvi_0778 0.37 +0.3
877,465 - +3.7
877,468 + Echvi_0778 0.37 +0.4
877,468 + Echvi_0778 0.37 +1.5
877,469 - Echvi_0778 0.37 +0.7
877,469 - Echvi_0778 0.37 +0.5
877,475 - Echvi_0778 0.37 -0.6
877,533 + Echvi_0778 0.39 +0.2
877,533 + Echvi_0778 0.39 +0.8
877,571 + Echvi_0778 0.40 -1.3
877,575 + Echvi_0778 0.41 +0.9
877,575 + Echvi_0778 0.41 +0.9
877,575 + Echvi_0778 0.41 +0.8
877,575 + Echvi_0778 0.41 +1.7
877,575 + Echvi_0778 0.41 +1.3
877,576 - Echvi_0778 0.41 +0.4
877,576 - Echvi_0778 0.41 +0.6
877,576 - Echvi_0778 0.41 +1.9
877,576 - Echvi_0778 0.41 +0.6
877,576 - Echvi_0778 0.41 +1.5
877,576 - Echvi_0778 0.41 +1.7
877,578 - Echvi_0778 0.41 +0.1
877,636 + Echvi_0778 0.43 +0.8
877,637 - Echvi_0778 0.43 +0.5
877,704 + Echvi_0778 0.45 +0.4
877,754 + Echvi_0778 0.47 +0.6
877,754 + Echvi_0778 0.47 +0.1
877,826 + Echvi_0778 0.49 +0.2
877,826 + Echvi_0778 0.49 +0.7
877,826 + Echvi_0778 0.49 +0.2
877,827 - Echvi_0778 0.49 +2.4
877,827 - Echvi_0778 0.49 +0.3
877,827 - Echvi_0778 0.49 +0.7
877,827 - Echvi_0778 0.49 +0.1
877,860 + Echvi_0778 0.50 +0.4
877,944 + Echvi_0778 0.53 -0.9
877,944 + Echvi_0778 0.53 +1.0
877,947 + Echvi_0778 0.53 +0.3
877,947 + Echvi_0778 0.53 -1.0
877,948 - Echvi_0778 0.53 +1.7
877,965 + Echvi_0778 0.54 +1.8
877,966 - Echvi_0778 0.54 +3.0
877,966 - Echvi_0778 0.54 +0.6
877,966 - Echvi_0778 0.54 +1.5
877,966 - Echvi_0778 0.54 +0.8
877,966 - Echvi_0778 0.54 +0.1
877,967 + Echvi_0778 0.54 +0.9
877,997 + Echvi_0778 0.55 +0.3
877,997 + Echvi_0778 0.55 +0.3
878,115 - Echvi_0778 0.59 +0.9
878,126 - Echvi_0778 0.59 +0.9
878,144 + Echvi_0778 0.60 +0.7
878,144 + Echvi_0778 0.60 +1.2
878,145 - Echvi_0778 0.60 +1.4
878,179 + Echvi_0778 0.61 +1.3
878,180 - Echvi_0778 0.61 +1.8
878,194 - Echvi_0778 0.61 +1.1
878,221 + Echvi_0778 0.62 +1.1
878,221 + Echvi_0778 0.62 +0.5
878,221 + Echvi_0778 0.62 -0.2
878,321 + Echvi_0778 0.66 +1.6
878,321 + Echvi_0778 0.66 +1.0
878,484 + Echvi_0778 0.71 -0.5
878,503 - Echvi_0778 0.72 +0.5
878,574 + Echvi_0778 0.74 +3.7
878,628 + Echvi_0778 0.76 +0.2
878,629 - Echvi_0778 0.76 +0.7
878,629 - Echvi_0778 0.76 +1.4
878,629 - Echvi_0778 0.76 +0.8
878,712 + Echvi_0778 0.79 +1.1
878,712 + Echvi_0778 0.79 +0.1
878,713 - Echvi_0778 0.79 +1.0
878,713 - Echvi_0778 0.79 +0.9
878,715 - Echvi_0778 0.79 +0.7
878,873 + Echvi_0778 0.84 +2.0
878,874 - Echvi_0778 0.84 +0.6
878,874 - Echvi_0778 0.84 +2.2
879,005 + Echvi_0778 0.89 -1.1
879,006 - Echvi_0778 0.89 +0.9
879,008 + Echvi_0778 0.89 +0.4
879,009 - Echvi_0778 0.89 +1.2
879,009 - Echvi_0778 0.89 +1.0
879,009 - Echvi_0778 0.89 +0.1
879,052 + +0.3
879,212 + +1.1
879,213 - +1.8
879,213 - +0.3
879,213 - +1.7
879,275 - +0.8
879,275 - +0.7
879,366 + +1.4
879,367 - -0.0
879,378 + +0.8
879,386 + +0.5
879,429 + +1.7
879,435 + +0.6
879,447 + +0.5
879,447 + +0.5
879,447 + +1.1
879,456 + +0.5
879,456 + -0.3
879,491 + -0.6
879,491 + +0.3
879,491 + +0.2
879,491 + -0.9
879,497 + +0.5
879,497 + -0.3
879,502 + -0.7
879,502 + +2.1
879,502 + +1.1
879,502 + -1.5
879,544 + +1.4
879,591 + Echvi_0779 0.15 +1.4
879,686 + Echvi_0779 0.38 +0.1
879,686 + Echvi_0779 0.38 +3.7
879,737 + Echvi_0779 0.50 +1.0
879,846 + Echvi_0779 0.76 +0.2
879,846 + Echvi_0779 0.76 +2.1
879,846 + Echvi_0779 0.76 +1.5
879,865 + Echvi_0779 0.81 +2.7
879,865 + Echvi_0779 0.81 +0.4
879,866 - Echvi_0779 0.81 +0.7
879,866 - Echvi_0779 0.81 +0.1
879,867 + Echvi_0779 0.81 +0.4
879,867 + Echvi_0779 0.81 -1.6
879,867 + Echvi_0779 0.81 +1.3
879,868 - Echvi_0779 0.82 -0.7
879,879 + Echvi_0779 0.84 +0.1
879,914 + +0.0
879,914 + +1.5

Or see this region's nucleotide sequence