Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0490

Experiment: m.b. Carbenicillin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0489 and Echvi_0490 are separated by 184 nucleotidesEchvi_0490 and Echvi_0491 are separated by 103 nucleotides Echvi_0489: Echvi_0489 - Uncharacterized protein conserved in bacteria, at 541,825 to 543,066 _0489 Echvi_0490: Echvi_0490 - Beta-glucanase/Beta-glucan synthetase, at 543,251 to 544,132 _0490 Echvi_0491: Echvi_0491 - Domain of Unknown Function (DUF1080)., at 544,236 to 545,045 _0491 Position (kb) 543 544 545Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 542.357 kb on + strand, within Echvi_0489at 542.387 kb on + strand, within Echvi_0489at 542.388 kb on - strand, within Echvi_0489at 542.449 kb on - strand, within Echvi_0489at 542.486 kb on - strand, within Echvi_0489at 542.673 kb on + strand, within Echvi_0489at 542.732 kb on + strand, within Echvi_0489at 542.732 kb on + strand, within Echvi_0489at 542.733 kb on - strand, within Echvi_0489at 542.870 kb on - strand, within Echvi_0489at 542.938 kb on + strand, within Echvi_0489at 542.938 kb on + strand, within Echvi_0489at 542.938 kb on + strand, within Echvi_0489at 542.939 kb on - strand, within Echvi_0489at 542.939 kb on - strand, within Echvi_0489at 542.939 kb on - strand, within Echvi_0489at 542.944 kb on + strandat 542.948 kb on + strandat 542.949 kb on - strandat 542.974 kb on + strandat 543.019 kb on + strandat 543.020 kb on - strandat 543.057 kb on + strandat 543.057 kb on + strandat 543.098 kb on - strandat 543.191 kb on + strandat 543.230 kb on + strandat 543.230 kb on + strandat 543.230 kb on + strandat 543.265 kb on - strandat 543.266 kb on + strandat 543.266 kb on + strandat 543.266 kb on + strandat 543.267 kb on - strandat 543.273 kb on - strandat 543.277 kb on - strandat 543.288 kb on + strandat 543.288 kb on + strandat 543.288 kb on + strandat 543.307 kb on + strandat 543.307 kb on + strandat 543.355 kb on + strand, within Echvi_0490at 543.355 kb on + strand, within Echvi_0490at 543.479 kb on + strand, within Echvi_0490at 543.637 kb on + strand, within Echvi_0490at 543.637 kb on + strand, within Echvi_0490at 543.638 kb on - strand, within Echvi_0490at 543.641 kb on + strand, within Echvi_0490at 543.642 kb on - strand, within Echvi_0490at 543.642 kb on - strand, within Echvi_0490at 543.716 kb on + strand, within Echvi_0490at 543.716 kb on + strand, within Echvi_0490at 543.716 kb on + strand, within Echvi_0490at 543.716 kb on + strand, within Echvi_0490at 543.789 kb on + strand, within Echvi_0490at 543.789 kb on + strand, within Echvi_0490at 543.916 kb on - strand, within Echvi_0490at 543.916 kb on - strand, within Echvi_0490at 543.918 kb on + strand, within Echvi_0490at 543.919 kb on - strand, within Echvi_0490at 544.015 kb on + strand, within Echvi_0490at 544.015 kb on + strand, within Echvi_0490at 544.016 kb on - strand, within Echvi_0490at 544.031 kb on - strand, within Echvi_0490at 544.050 kb on - strandat 544.050 kb on - strandat 544.118 kb on + strandat 544.118 kb on + strandat 544.118 kb on + strandat 544.118 kb on + strandat 544.119 kb on - strandat 544.119 kb on - strandat 544.120 kb on + strandat 544.120 kb on + strandat 544.121 kb on - strandat 544.121 kb on - strandat 544.159 kb on - strandat 544.184 kb on - strandat 544.207 kb on - strandat 544.223 kb on + strandat 544.265 kb on + strandat 544.265 kb on + strandat 544.309 kb on + strandat 544.309 kb on + strandat 544.310 kb on - strandat 544.391 kb on + strand, within Echvi_0491at 544.483 kb on + strand, within Echvi_0491at 544.484 kb on - strand, within Echvi_0491at 544.505 kb on + strand, within Echvi_0491at 544.562 kb on + strand, within Echvi_0491at 544.644 kb on + strand, within Echvi_0491at 544.685 kb on + strand, within Echvi_0491at 544.691 kb on + strand, within Echvi_0491at 544.691 kb on + strand, within Echvi_0491at 544.692 kb on - strand, within Echvi_0491at 544.693 kb on + strand, within Echvi_0491at 544.693 kb on + strand, within Echvi_0491at 544.693 kb on + strand, within Echvi_0491at 544.697 kb on + strand, within Echvi_0491at 544.697 kb on + strand, within Echvi_0491at 544.697 kb on + strand, within Echvi_0491at 544.698 kb on - strand, within Echvi_0491at 544.699 kb on + strand, within Echvi_0491at 544.699 kb on + strand, within Echvi_0491at 544.816 kb on + strand, within Echvi_0491at 544.825 kb on + strand, within Echvi_0491at 544.826 kb on - strand, within Echvi_0491at 544.826 kb on - strand, within Echvi_0491at 545.077 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml
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542,357 + Echvi_0489 0.43 -0.9
542,387 + Echvi_0489 0.45 +0.1
542,388 - Echvi_0489 0.45 +0.6
542,449 - Echvi_0489 0.50 -0.0
542,486 - Echvi_0489 0.53 -2.0
542,673 + Echvi_0489 0.68 +0.5
542,732 + Echvi_0489 0.73 +0.5
542,732 + Echvi_0489 0.73 -0.1
542,733 - Echvi_0489 0.73 -0.5
542,870 - Echvi_0489 0.84 -0.4
542,938 + Echvi_0489 0.90 -1.0
542,938 + Echvi_0489 0.90 +1.0
542,938 + Echvi_0489 0.90 -1.2
542,939 - Echvi_0489 0.90 +0.1
542,939 - Echvi_0489 0.90 +0.9
542,939 - Echvi_0489 0.90 -0.4
542,944 + -0.7
542,948 + +0.9
542,949 - -2.0
542,974 + -1.3
543,019 + -1.9
543,020 - -0.4
543,057 + -1.2
543,057 + -0.5
543,098 - -0.6
543,191 + -0.5
543,230 + +1.2
543,230 + +0.0
543,230 + -0.7
543,265 - -1.2
543,266 + +0.6
543,266 + +1.0
543,266 + -0.0
543,267 - -1.2
543,273 - -0.5
543,277 - +2.2
543,288 + -0.3
543,288 + -0.0
543,288 + -0.2
543,307 + -0.6
543,307 + -0.3
543,355 + Echvi_0490 0.12 -0.4
543,355 + Echvi_0490 0.12 -0.6
543,479 + Echvi_0490 0.26 -3.1
543,637 + Echvi_0490 0.44 +0.2
543,637 + Echvi_0490 0.44 -1.3
543,638 - Echvi_0490 0.44 -2.3
543,641 + Echvi_0490 0.44 +1.2
543,642 - Echvi_0490 0.44 -2.2
543,642 - Echvi_0490 0.44 -0.0
543,716 + Echvi_0490 0.53 +0.2
543,716 + Echvi_0490 0.53 -0.5
543,716 + Echvi_0490 0.53 -1.9
543,716 + Echvi_0490 0.53 -1.3
543,789 + Echvi_0490 0.61 +0.6
543,789 + Echvi_0490 0.61 -0.4
543,916 - Echvi_0490 0.75 +1.6
543,916 - Echvi_0490 0.75 -0.0
543,918 + Echvi_0490 0.76 -1.1
543,919 - Echvi_0490 0.76 -0.5
544,015 + Echvi_0490 0.87 -1.5
544,015 + Echvi_0490 0.87 -1.5
544,016 - Echvi_0490 0.87 -0.1
544,031 - Echvi_0490 0.88 +1.2
544,050 - -0.8
544,050 - +1.4
544,118 + -0.8
544,118 + +1.1
544,118 + -1.3
544,118 + -0.1
544,119 - +0.6
544,119 - -0.4
544,120 + +0.2
544,120 + +0.7
544,121 - +0.2
544,121 - -0.5
544,159 - -1.4
544,184 - +1.6
544,207 - -1.4
544,223 + +0.2
544,265 + -0.8
544,265 + +0.6
544,309 + -0.6
544,309 + -1.0
544,310 - -0.7
544,391 + Echvi_0491 0.19 +0.4
544,483 + Echvi_0491 0.30 -0.8
544,484 - Echvi_0491 0.31 +0.3
544,505 + Echvi_0491 0.33 -0.5
544,562 + Echvi_0491 0.40 -1.8
544,644 + Echvi_0491 0.50 -1.1
544,685 + Echvi_0491 0.55 -0.0
544,691 + Echvi_0491 0.56 -0.6
544,691 + Echvi_0491 0.56 -0.7
544,692 - Echvi_0491 0.56 -0.6
544,693 + Echvi_0491 0.56 +0.2
544,693 + Echvi_0491 0.56 -0.2
544,693 + Echvi_0491 0.56 -2.5
544,697 + Echvi_0491 0.57 +0.7
544,697 + Echvi_0491 0.57 +1.2
544,697 + Echvi_0491 0.57 -0.2
544,698 - Echvi_0491 0.57 -0.7
544,699 + Echvi_0491 0.57 -0.7
544,699 + Echvi_0491 0.57 +0.1
544,816 + Echvi_0491 0.72 -2.1
544,825 + Echvi_0491 0.73 -2.1
544,826 - Echvi_0491 0.73 -0.0
544,826 - Echvi_0491 0.73 -0.2
545,077 - -0.3

Or see this region's nucleotide sequence