Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0446

Experiment: m.b. Carbenicillin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0445 and Echvi_0446 are separated by 597 nucleotidesEchvi_0446 and Echvi_0447 are separated by 29 nucleotides Echvi_0445: Echvi_0445 - HEPN domain., at 487,074 to 488,786 _0445 Echvi_0446: Echvi_0446 - hypothetical protein, at 489,384 to 490,346 _0446 Echvi_0447: Echvi_0447 - hypothetical protein, at 490,376 to 491,695 _0447 Position (kb) 489 490 491Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 488.388 kb on + strand, within Echvi_0445at 488.389 kb on - strand, within Echvi_0445at 488.389 kb on - strand, within Echvi_0445at 488.416 kb on + strand, within Echvi_0445at 488.417 kb on - strand, within Echvi_0445at 488.421 kb on - strand, within Echvi_0445at 488.465 kb on + strand, within Echvi_0445at 488.465 kb on + strand, within Echvi_0445at 488.476 kb on - strand, within Echvi_0445at 488.652 kb on + strandat 488.658 kb on + strandat 488.766 kb on - strandat 488.771 kb on + strandat 488.771 kb on + strandat 488.771 kb on + strandat 488.772 kb on - strandat 488.772 kb on - strandat 488.830 kb on - strandat 488.849 kb on + strandat 488.855 kb on - strandat 488.961 kb on + strandat 488.962 kb on - strandat 488.962 kb on - strandat 488.976 kb on + strandat 488.980 kb on + strandat 488.980 kb on + strandat 488.980 kb on + strandat 488.981 kb on - strandat 488.981 kb on - strandat 488.981 kb on - strandat 489.014 kb on + strandat 489.035 kb on + strandat 489.036 kb on - strandat 489.036 kb on - strandat 489.089 kb on - strandat 489.236 kb on + strandat 489.238 kb on + strandat 489.238 kb on + strandat 489.238 kb on + strandat 489.239 kb on - strandat 489.241 kb on - strandat 489.283 kb on + strandat 489.284 kb on - strandat 489.293 kb on - strandat 489.337 kb on + strandat 489.360 kb on + strandat 489.360 kb on + strandat 489.361 kb on - strandat 489.361 kb on - strandat 489.378 kb on + strandat 489.403 kb on - strandat 489.459 kb on + strandat 489.459 kb on + strandat 489.459 kb on + strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.460 kb on - strandat 489.492 kb on + strand, within Echvi_0446at 489.494 kb on + strand, within Echvi_0446at 489.494 kb on + strand, within Echvi_0446at 489.548 kb on + strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.549 kb on - strand, within Echvi_0446at 489.550 kb on + strand, within Echvi_0446at 489.550 kb on + strand, within Echvi_0446at 489.582 kb on + strand, within Echvi_0446at 489.583 kb on - strand, within Echvi_0446at 489.615 kb on + strand, within Echvi_0446at 489.707 kb on - strand, within Echvi_0446at 489.708 kb on + strand, within Echvi_0446at 489.708 kb on + strand, within Echvi_0446at 489.708 kb on + strand, within Echvi_0446at 489.709 kb on - strand, within Echvi_0446at 489.720 kb on - strand, within Echvi_0446at 489.720 kb on - strand, within Echvi_0446at 489.745 kb on + strand, within Echvi_0446at 489.746 kb on - strand, within Echvi_0446at 489.802 kb on + strand, within Echvi_0446at 489.802 kb on + strand, within Echvi_0446at 489.803 kb on - strandat 489.808 kb on + strand, within Echvi_0446at 489.809 kb on - strand, within Echvi_0446at 489.821 kb on + strand, within Echvi_0446at 489.824 kb on + strand, within Echvi_0446at 489.825 kb on - strandat 489.825 kb on - strand, within Echvi_0446at 489.825 kb on - strand, within Echvi_0446at 489.825 kb on - strand, within Echvi_0446at 489.847 kb on + strand, within Echvi_0446at 489.847 kb on + strand, within Echvi_0446at 489.848 kb on - strand, within Echvi_0446at 489.949 kb on + strand, within Echvi_0446at 489.950 kb on - strand, within Echvi_0446at 489.954 kb on + strand, within Echvi_0446at 489.960 kb on + strand, within Echvi_0446at 489.960 kb on + strand, within Echvi_0446at 489.960 kb on + strand, within Echvi_0446at 489.961 kb on - strand, within Echvi_0446at 489.961 kb on - strand, within Echvi_0446at 489.961 kb on - strand, within Echvi_0446at 490.026 kb on - strand, within Echvi_0446at 490.125 kb on - strand, within Echvi_0446at 490.127 kb on + strand, within Echvi_0446at 490.127 kb on + strand, within Echvi_0446at 490.128 kb on - strand, within Echvi_0446at 490.128 kb on - strand, within Echvi_0446at 490.128 kb on - strand, within Echvi_0446at 490.141 kb on + strand, within Echvi_0446at 490.200 kb on - strand, within Echvi_0446at 490.200 kb on - strand, within Echvi_0446at 490.200 kb on - strand, within Echvi_0446at 490.281 kb on + strandat 490.283 kb on + strandat 490.284 kb on - strandat 490.299 kb on + strandat 490.329 kb on - strandat 490.352 kb on + strandat 490.353 kb on - strandat 490.353 kb on - strandat 490.354 kb on + strandat 490.355 kb on - strandat 490.445 kb on + strandat 490.446 kb on - strandat 490.446 kb on - strandat 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.518 kb on + strand, within Echvi_0447at 490.519 kb on - strand, within Echvi_0447at 490.519 kb on - strand, within Echvi_0447at 490.519 kb on - strand, within Echvi_0447at 490.519 kb on - strand, within Echvi_0447at 490.520 kb on + strand, within Echvi_0447at 490.520 kb on + strand, within Echvi_0447at 490.520 kb on + strand, within Echvi_0447at 490.521 kb on - strand, within Echvi_0447at 490.521 kb on - strand, within Echvi_0447at 490.521 kb on - strand, within Echvi_0447at 490.535 kb on + strand, within Echvi_0447at 490.563 kb on + strand, within Echvi_0447at 490.583 kb on + strand, within Echvi_0447at 490.619 kb on + strand, within Echvi_0447at 490.619 kb on + strand, within Echvi_0447at 490.639 kb on + strand, within Echvi_0447at 490.639 kb on + strand, within Echvi_0447at 490.639 kb on + strand, within Echvi_0447at 490.640 kb on - strand, within Echvi_0447at 490.640 kb on - strand, within Echvi_0447at 490.640 kb on - strand, within Echvi_0447at 490.668 kb on + strand, within Echvi_0447at 490.769 kb on + strand, within Echvi_0447at 490.798 kb on + strand, within Echvi_0447at 490.798 kb on + strand, within Echvi_0447at 490.800 kb on + strand, within Echvi_0447at 490.801 kb on - strand, within Echvi_0447at 490.902 kb on - strand, within Echvi_0447at 490.910 kb on + strand, within Echvi_0447at 490.914 kb on + strand, within Echvi_0447at 490.914 kb on + strand, within Echvi_0447at 490.914 kb on + strand, within Echvi_0447at 490.914 kb on + strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.915 kb on - strand, within Echvi_0447at 490.937 kb on - strand, within Echvi_0447at 490.945 kb on + strand, within Echvi_0447at 490.945 kb on + strand, within Echvi_0447at 490.962 kb on - strand, within Echvi_0447at 490.966 kb on + strand, within Echvi_0447at 491.010 kb on + strand, within Echvi_0447at 491.026 kb on + strand, within Echvi_0447at 491.026 kb on + strand, within Echvi_0447at 491.026 kb on + strand, within Echvi_0447at 491.038 kb on + strand, within Echvi_0447at 491.038 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.058 kb on + strand, within Echvi_0447at 491.059 kb on - strand, within Echvi_0447at 491.084 kb on - strand, within Echvi_0447at 491.088 kb on + strand, within Echvi_0447at 491.088 kb on + strand, within Echvi_0447at 491.089 kb on - strand, within Echvi_0447at 491.089 kb on - strand, within Echvi_0447at 491.100 kb on + strand, within Echvi_0447at 491.100 kb on + strand, within Echvi_0447at 491.101 kb on - strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.136 kb on + strand, within Echvi_0447at 491.137 kb on - strand, within Echvi_0447at 491.137 kb on - strand, within Echvi_0447at 491.137 kb on - strand, within Echvi_0447at 491.179 kb on + strand, within Echvi_0447at 491.202 kb on + strand, within Echvi_0447at 491.202 kb on + strand, within Echvi_0447at 491.202 kb on + strand, within Echvi_0447at 491.203 kb on - strand, within Echvi_0447at 491.266 kb on - strand, within Echvi_0447at 491.266 kb on - strand, within Echvi_0447at 491.269 kb on + strand, within Echvi_0447at 491.269 kb on + strand, within Echvi_0447at 491.302 kb on + strand, within Echvi_0447at 491.303 kb on - strand, within Echvi_0447at 491.306 kb on - strand, within Echvi_0447at 491.343 kb on + strand, within Echvi_0447at 491.344 kb on - strand, within Echvi_0447at 491.344 kb on - strand, within Echvi_0447

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml
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488,388 + Echvi_0445 0.77 +1.3
488,389 - Echvi_0445 0.77 +0.2
488,389 - Echvi_0445 0.77 -0.8
488,416 + Echvi_0445 0.78 +0.4
488,417 - Echvi_0445 0.78 -0.2
488,421 - Echvi_0445 0.79 -0.0
488,465 + Echvi_0445 0.81 +0.2
488,465 + Echvi_0445 0.81 -0.3
488,476 - Echvi_0445 0.82 +1.1
488,652 + +0.1
488,658 + -1.0
488,766 - -0.2
488,771 + +0.3
488,771 + +1.2
488,771 + +0.0
488,772 - -0.6
488,772 - -0.9
488,830 - +1.1
488,849 + +0.7
488,855 - -1.2
488,961 + -0.1
488,962 - +0.4
488,962 - +0.8
488,976 + +0.5
488,980 + +2.4
488,980 + +0.5
488,980 + -2.8
488,981 - -0.6
488,981 - -0.3
488,981 - +0.1
489,014 + -0.8
489,035 + -0.6
489,036 - -0.6
489,036 - -0.8
489,089 - -0.4
489,236 + +0.5
489,238 + -0.4
489,238 + +0.1
489,238 + -0.8
489,239 - -0.5
489,241 - -0.2
489,283 + -1.2
489,284 - +0.1
489,293 - -0.0
489,337 + +0.4
489,360 + -0.3
489,360 + +0.1
489,361 - +2.3
489,361 - -0.2
489,378 + +1.2
489,403 - -0.4
489,459 + -0.2
489,459 + -0.1
489,459 + -1.4
489,460 - -0.9
489,460 - +0.0
489,460 - +0.1
489,460 - -0.5
489,460 - -1.0
489,460 - -0.4
489,460 - +0.1
489,492 + Echvi_0446 0.11 -1.6
489,494 + Echvi_0446 0.11 -0.8
489,494 + Echvi_0446 0.11 -0.8
489,548 + Echvi_0446 0.17 -1.0
489,549 - Echvi_0446 0.17 -1.1
489,549 - Echvi_0446 0.17 -0.3
489,549 - Echvi_0446 0.17 -0.9
489,549 - Echvi_0446 0.17 +0.0
489,549 - Echvi_0446 0.17 -0.0
489,549 - Echvi_0446 0.17 -0.9
489,550 + Echvi_0446 0.17 +2.0
489,550 + Echvi_0446 0.17 -0.4
489,582 + Echvi_0446 0.21 -0.9
489,583 - Echvi_0446 0.21 +0.2
489,615 + Echvi_0446 0.24 -0.6
489,707 - Echvi_0446 0.34 -2.1
489,708 + Echvi_0446 0.34 +0.7
489,708 + Echvi_0446 0.34 -0.4
489,708 + Echvi_0446 0.34 -0.5
489,709 - Echvi_0446 0.34 -0.4
489,720 - Echvi_0446 0.35 -1.7
489,720 - Echvi_0446 0.35 +0.6
489,745 + Echvi_0446 0.37 +0.2
489,746 - Echvi_0446 0.38 -0.7
489,802 + Echvi_0446 0.43 -0.8
489,802 + Echvi_0446 0.43 +1.8
489,803 - -0.8
489,808 + Echvi_0446 0.44 -0.5
489,809 - Echvi_0446 0.44 -0.4
489,821 + Echvi_0446 0.45 -0.8
489,824 + Echvi_0446 0.46 +2.3
489,825 - +2.1
489,825 - Echvi_0446 0.46 +0.8
489,825 - Echvi_0446 0.46 +0.3
489,825 - Echvi_0446 0.46 -1.7
489,847 + Echvi_0446 0.48 -0.6
489,847 + Echvi_0446 0.48 +0.1
489,848 - Echvi_0446 0.48 -0.1
489,949 + Echvi_0446 0.59 -0.4
489,950 - Echvi_0446 0.59 -1.0
489,954 + Echvi_0446 0.59 -0.2
489,960 + Echvi_0446 0.60 -1.2
489,960 + Echvi_0446 0.60 +0.0
489,960 + Echvi_0446 0.60 -1.2
489,961 - Echvi_0446 0.60 -0.7
489,961 - Echvi_0446 0.60 +0.6
489,961 - Echvi_0446 0.60 -0.2
490,026 - Echvi_0446 0.67 -0.4
490,125 - Echvi_0446 0.77 +0.1
490,127 + Echvi_0446 0.77 -0.3
490,127 + Echvi_0446 0.77 +0.4
490,128 - Echvi_0446 0.77 +0.8
490,128 - Echvi_0446 0.77 +0.4
490,128 - Echvi_0446 0.77 -0.1
490,141 + Echvi_0446 0.79 +0.0
490,200 - Echvi_0446 0.85 +0.2
490,200 - Echvi_0446 0.85 -0.8
490,200 - Echvi_0446 0.85 -1.1
490,281 + -0.1
490,283 + -0.2
490,284 - +0.6
490,299 + +0.6
490,329 - +0.0
490,352 + -1.0
490,353 - -0.0
490,353 - +0.4
490,354 + +0.8
490,355 - +0.1
490,445 + -0.5
490,446 - -0.5
490,446 - +0.3
490,518 + Echvi_0447 0.11 -0.1
490,518 + Echvi_0447 0.11 -1.7
490,518 + Echvi_0447 0.11 +0.0
490,518 + Echvi_0447 0.11 -0.0
490,518 + Echvi_0447 0.11 +0.3
490,518 + Echvi_0447 0.11 +0.7
490,518 + Echvi_0447 0.11 -0.3
490,518 + Echvi_0447 0.11 -0.1
490,519 - Echvi_0447 0.11 -0.4
490,519 - Echvi_0447 0.11 +0.5
490,519 - Echvi_0447 0.11 -1.4
490,519 - Echvi_0447 0.11 -0.4
490,520 + Echvi_0447 0.11 -1.6
490,520 + Echvi_0447 0.11 -0.3
490,520 + Echvi_0447 0.11 -0.9
490,521 - Echvi_0447 0.11 -1.0
490,521 - Echvi_0447 0.11 -1.2
490,521 - Echvi_0447 0.11 -1.0
490,535 + Echvi_0447 0.12 -0.8
490,563 + Echvi_0447 0.14 +0.3
490,583 + Echvi_0447 0.16 +0.1
490,619 + Echvi_0447 0.18 -1.4
490,619 + Echvi_0447 0.18 -1.1
490,639 + Echvi_0447 0.20 -0.3
490,639 + Echvi_0447 0.20 +0.6
490,639 + Echvi_0447 0.20 -1.6
490,640 - Echvi_0447 0.20 -1.0
490,640 - Echvi_0447 0.20 +0.3
490,640 - Echvi_0447 0.20 -0.4
490,668 + Echvi_0447 0.22 +0.6
490,769 + Echvi_0447 0.30 -0.1
490,798 + Echvi_0447 0.32 -0.4
490,798 + Echvi_0447 0.32 -0.1
490,800 + Echvi_0447 0.32 -0.6
490,801 - Echvi_0447 0.32 +0.3
490,902 - Echvi_0447 0.40 +0.0
490,910 + Echvi_0447 0.40 -0.2
490,914 + Echvi_0447 0.41 +0.1
490,914 + Echvi_0447 0.41 -0.3
490,914 + Echvi_0447 0.41 -1.2
490,914 + Echvi_0447 0.41 +0.4
490,915 - Echvi_0447 0.41 +0.0
490,915 - Echvi_0447 0.41 +0.5
490,915 - Echvi_0447 0.41 +0.9
490,915 - Echvi_0447 0.41 -0.3
490,915 - Echvi_0447 0.41 +2.1
490,937 - Echvi_0447 0.42 -1.4
490,945 + Echvi_0447 0.43 -0.3
490,945 + Echvi_0447 0.43 -0.4
490,962 - Echvi_0447 0.44 -0.8
490,966 + Echvi_0447 0.45 -1.4
491,010 + Echvi_0447 0.48 -0.5
491,026 + Echvi_0447 0.49 -1.8
491,026 + Echvi_0447 0.49 +0.1
491,026 + Echvi_0447 0.49 -0.4
491,038 + Echvi_0447 0.50 +0.6
491,038 + Echvi_0447 0.50 -0.4
491,058 + Echvi_0447 0.52 -1.0
491,058 + Echvi_0447 0.52 -1.4
491,058 + Echvi_0447 0.52 -0.1
491,058 + Echvi_0447 0.52 -0.6
491,058 + Echvi_0447 0.52 -0.8
491,059 - Echvi_0447 0.52 -0.5
491,084 - Echvi_0447 0.54 +1.6
491,088 + Echvi_0447 0.54 +0.1
491,088 + Echvi_0447 0.54 -1.4
491,089 - Echvi_0447 0.54 +1.6
491,089 - Echvi_0447 0.54 +0.3
491,100 + Echvi_0447 0.55 -0.6
491,100 + Echvi_0447 0.55 +0.3
491,101 - Echvi_0447 0.55 +1.1
491,136 + Echvi_0447 0.58 -0.3
491,136 + Echvi_0447 0.58 -1.2
491,136 + Echvi_0447 0.58 +0.6
491,136 + Echvi_0447 0.58 -0.5
491,136 + Echvi_0447 0.58 +0.1
491,137 - Echvi_0447 0.58 +1.3
491,137 - Echvi_0447 0.58 +0.2
491,137 - Echvi_0447 0.58 +0.5
491,179 + Echvi_0447 0.61 +0.0
491,202 + Echvi_0447 0.63 -1.0
491,202 + Echvi_0447 0.63 -0.1
491,202 + Echvi_0447 0.63 +0.0
491,203 - Echvi_0447 0.63 +0.7
491,266 - Echvi_0447 0.67 +0.9
491,266 - Echvi_0447 0.67 +0.5
491,269 + Echvi_0447 0.68 -0.2
491,269 + Echvi_0447 0.68 -1.9
491,302 + Echvi_0447 0.70 -1.0
491,303 - Echvi_0447 0.70 -0.3
491,306 - Echvi_0447 0.70 +0.6
491,343 + Echvi_0447 0.73 -0.8
491,344 - Echvi_0447 0.73 +0.6
491,344 - Echvi_0447 0.73 -0.0

Or see this region's nucleotide sequence