Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0434

Experiment: m.b. Carbenicillin 0.1 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0432 and Echvi_0433 are separated by 176 nucleotidesEchvi_0433 and Echvi_0434 are separated by 3 nucleotidesEchvi_0434 and Echvi_0435 are separated by 23 nucleotides Echvi_0432: Echvi_0432 - hypothetical protein, at 473,766 to 474,407 _0432 Echvi_0433: Echvi_0433 - hypothetical protein, at 474,584 to 474,754 _0433 Echvi_0434: Echvi_0434 - hypothetical protein, at 474,758 to 475,555 _0434 Echvi_0435: Echvi_0435 - Relaxase/Mobilisation nuclease domain., at 475,579 to 476,757 _0435 Position (kb) 474 475 476Strain fitness (log2 ratio) -2 -1 0 1 2at 473.761 kb on - strandat 473.765 kb on + strandat 473.766 kb on - strandat 473.766 kb on - strandat 473.770 kb on + strandat 473.850 kb on + strand, within Echvi_0432at 473.850 kb on + strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.851 kb on - strand, within Echvi_0432at 473.925 kb on + strand, within Echvi_0432at 473.925 kb on + strand, within Echvi_0432at 473.926 kb on - strand, within Echvi_0432at 473.927 kb on + strand, within Echvi_0432at 473.927 kb on + strand, within Echvi_0432at 473.933 kb on - strand, within Echvi_0432at 473.933 kb on - strand, within Echvi_0432at 473.933 kb on - strand, within Echvi_0432at 473.962 kb on + strand, within Echvi_0432at 473.993 kb on + strand, within Echvi_0432at 474.010 kb on + strand, within Echvi_0432at 474.010 kb on + strand, within Echvi_0432at 474.010 kb on + strand, within Echvi_0432at 474.023 kb on + strand, within Echvi_0432at 474.029 kb on + strand, within Echvi_0432at 474.029 kb on + strand, within Echvi_0432at 474.029 kb on + strand, within Echvi_0432at 474.100 kb on + strand, within Echvi_0432at 474.142 kb on + strand, within Echvi_0432at 474.167 kb on + strand, within Echvi_0432at 474.168 kb on - strand, within Echvi_0432at 474.229 kb on + strand, within Echvi_0432at 474.321 kb on + strand, within Echvi_0432at 474.322 kb on - strand, within Echvi_0432at 474.322 kb on - strand, within Echvi_0432at 474.342 kb on + strand, within Echvi_0432at 474.348 kb on + strandat 474.359 kb on - strandat 474.394 kb on - strandat 474.469 kb on - strandat 474.480 kb on - strandat 474.488 kb on + strandat 474.507 kb on - strandat 474.526 kb on - strandat 474.529 kb on - strandat 474.546 kb on + strandat 474.584 kb on - strandat 474.729 kb on - strand, within Echvi_0433at 474.763 kb on + strandat 474.763 kb on + strandat 474.765 kb on + strandat 474.847 kb on + strand, within Echvi_0434at 474.847 kb on + strand, within Echvi_0434at 474.849 kb on + strand, within Echvi_0434at 474.850 kb on - strand, within Echvi_0434at 474.850 kb on - strand, within Echvi_0434at 474.875 kb on - strand, within Echvi_0434at 474.875 kb on - strand, within Echvi_0434at 474.884 kb on - strand, within Echvi_0434at 474.884 kb on - strand, within Echvi_0434at 474.884 kb on - strand, within Echvi_0434at 474.896 kb on - strand, within Echvi_0434at 474.912 kb on + strand, within Echvi_0434at 474.912 kb on + strand, within Echvi_0434at 474.912 kb on + strand, within Echvi_0434at 474.913 kb on - strand, within Echvi_0434at 474.913 kb on - strand, within Echvi_0434at 474.913 kb on - strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.916 kb on + strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.917 kb on - strand, within Echvi_0434at 474.918 kb on + strand, within Echvi_0434at 474.919 kb on - strand, within Echvi_0434at 474.919 kb on - strand, within Echvi_0434at 474.919 kb on - strand, within Echvi_0434at 474.929 kb on - strand, within Echvi_0434at 474.954 kb on - strand, within Echvi_0434at 474.968 kb on - strand, within Echvi_0434at 475.015 kb on + strand, within Echvi_0434at 475.036 kb on - strand, within Echvi_0434at 475.036 kb on - strand, within Echvi_0434at 475.047 kb on + strand, within Echvi_0434at 475.047 kb on + strand, within Echvi_0434at 475.048 kb on - strand, within Echvi_0434at 475.050 kb on - strand, within Echvi_0434at 475.057 kb on - strand, within Echvi_0434at 475.065 kb on - strand, within Echvi_0434at 475.150 kb on - strand, within Echvi_0434at 475.154 kb on + strand, within Echvi_0434at 475.155 kb on - strand, within Echvi_0434at 475.159 kb on - strand, within Echvi_0434at 475.181 kb on + strand, within Echvi_0434at 475.181 kb on + strand, within Echvi_0434at 475.181 kb on + strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.184 kb on - strand, within Echvi_0434at 475.204 kb on - strand, within Echvi_0434at 475.219 kb on - strand, within Echvi_0434at 475.230 kb on - strand, within Echvi_0434at 475.230 kb on - strand, within Echvi_0434at 475.240 kb on - strand, within Echvi_0434at 475.247 kb on - strand, within Echvi_0434at 475.252 kb on - strand, within Echvi_0434at 475.287 kb on + strand, within Echvi_0434at 475.313 kb on + strand, within Echvi_0434at 475.313 kb on + strand, within Echvi_0434at 475.317 kb on - strand, within Echvi_0434at 475.365 kb on + strand, within Echvi_0434at 475.373 kb on + strand, within Echvi_0434at 475.374 kb on - strand, within Echvi_0434at 475.377 kb on + strand, within Echvi_0434at 475.410 kb on - strand, within Echvi_0434at 475.431 kb on + strand, within Echvi_0434at 475.432 kb on - strand, within Echvi_0434at 475.435 kb on - strand, within Echvi_0434at 475.472 kb on + strand, within Echvi_0434at 475.539 kb on + strandat 475.543 kb on + strandat 475.544 kb on - strandat 475.544 kb on - strandat 475.569 kb on + strandat 475.581 kb on - strandat 475.584 kb on + strandat 475.584 kb on + strandat 475.636 kb on + strandat 475.680 kb on + strandat 475.680 kb on + strandat 475.681 kb on - strandat 475.681 kb on - strandat 475.711 kb on - strand, within Echvi_0435at 475.770 kb on + strand, within Echvi_0435at 475.811 kb on - strand, within Echvi_0435at 475.811 kb on - strand, within Echvi_0435at 475.811 kb on - strand, within Echvi_0435at 475.889 kb on - strand, within Echvi_0435at 476.076 kb on - strand, within Echvi_0435at 476.076 kb on - strand, within Echvi_0435at 476.076 kb on - strand, within Echvi_0435at 476.076 kb on - strand, within Echvi_0435at 476.076 kb on - strand, within Echvi_0435at 476.076 kb on - strand, within Echvi_0435at 476.087 kb on - strand, within Echvi_0435at 476.087 kb on - strand, within Echvi_0435at 476.201 kb on - strand, within Echvi_0435at 476.201 kb on - strand, within Echvi_0435at 476.210 kb on - strand, within Echvi_0435at 476.266 kb on - strand, within Echvi_0435at 476.318 kb on + strand, within Echvi_0435at 476.318 kb on + strand, within Echvi_0435at 476.319 kb on - strand, within Echvi_0435at 476.492 kb on + strand, within Echvi_0435at 476.492 kb on + strand, within Echvi_0435at 476.552 kb on - strand, within Echvi_0435

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Carbenicillin 0.1 mg/ml
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473,761 - -1.8
473,765 + -0.8
473,766 - -0.1
473,766 - +0.7
473,770 + -0.7
473,850 + Echvi_0432 0.13 +1.0
473,850 + Echvi_0432 0.13 -1.2
473,851 - Echvi_0432 0.13 -0.4
473,851 - Echvi_0432 0.13 -1.2
473,851 - Echvi_0432 0.13 +2.0
473,851 - Echvi_0432 0.13 -0.4
473,851 - Echvi_0432 0.13 -0.2
473,925 + Echvi_0432 0.25 +0.5
473,925 + Echvi_0432 0.25 -0.8
473,926 - Echvi_0432 0.25 +0.2
473,927 + Echvi_0432 0.25 -0.2
473,927 + Echvi_0432 0.25 +0.1
473,933 - Echvi_0432 0.26 +0.0
473,933 - Echvi_0432 0.26 -0.7
473,933 - Echvi_0432 0.26 -0.8
473,962 + Echvi_0432 0.31 +0.2
473,993 + Echvi_0432 0.35 +0.2
474,010 + Echvi_0432 0.38 -0.0
474,010 + Echvi_0432 0.38 -1.4
474,010 + Echvi_0432 0.38 -0.8
474,023 + Echvi_0432 0.40 -0.0
474,029 + Echvi_0432 0.41 -0.5
474,029 + Echvi_0432 0.41 +0.4
474,029 + Echvi_0432 0.41 -0.8
474,100 + Echvi_0432 0.52 -1.4
474,142 + Echvi_0432 0.59 -0.9
474,167 + Echvi_0432 0.62 -0.1
474,168 - Echvi_0432 0.63 +0.2
474,229 + Echvi_0432 0.72 +0.6
474,321 + Echvi_0432 0.86 +0.3
474,322 - Echvi_0432 0.87 -0.3
474,322 - Echvi_0432 0.87 -0.1
474,342 + Echvi_0432 0.90 +0.1
474,348 + +1.4
474,359 - +1.0
474,394 - +0.3
474,469 - +1.1
474,480 - +0.5
474,488 + -0.6
474,507 - +0.1
474,526 - -0.3
474,529 - -0.3
474,546 + +0.6
474,584 - +0.1
474,729 - Echvi_0433 0.85 -0.2
474,763 + -0.4
474,763 + -0.8
474,765 + -0.7
474,847 + Echvi_0434 0.11 -0.7
474,847 + Echvi_0434 0.11 -0.9
474,849 + Echvi_0434 0.11 -0.6
474,850 - Echvi_0434 0.12 -0.4
474,850 - Echvi_0434 0.12 -0.2
474,875 - Echvi_0434 0.15 +1.1
474,875 - Echvi_0434 0.15 -0.2
474,884 - Echvi_0434 0.16 +0.2
474,884 - Echvi_0434 0.16 +1.3
474,884 - Echvi_0434 0.16 +0.8
474,896 - Echvi_0434 0.17 -0.2
474,912 + Echvi_0434 0.19 -2.2
474,912 + Echvi_0434 0.19 -0.7
474,912 + Echvi_0434 0.19 -0.3
474,913 - Echvi_0434 0.19 -0.0
474,913 - Echvi_0434 0.19 +0.8
474,913 - Echvi_0434 0.19 -0.7
474,916 + Echvi_0434 0.20 -1.1
474,916 + Echvi_0434 0.20 -0.4
474,916 + Echvi_0434 0.20 +0.7
474,916 + Echvi_0434 0.20 -0.9
474,916 + Echvi_0434 0.20 -1.0
474,917 - Echvi_0434 0.20 +1.1
474,917 - Echvi_0434 0.20 +0.6
474,917 - Echvi_0434 0.20 -2.0
474,917 - Echvi_0434 0.20 -0.5
474,917 - Echvi_0434 0.20 -0.4
474,917 - Echvi_0434 0.20 -0.2
474,917 - Echvi_0434 0.20 -0.0
474,918 + Echvi_0434 0.20 -1.6
474,919 - Echvi_0434 0.20 +0.9
474,919 - Echvi_0434 0.20 -0.9
474,919 - Echvi_0434 0.20 -0.8
474,929 - Echvi_0434 0.21 -0.7
474,954 - Echvi_0434 0.25 -0.1
474,968 - Echvi_0434 0.26 -0.8
475,015 + Echvi_0434 0.32 -0.6
475,036 - Echvi_0434 0.35 +0.8
475,036 - Echvi_0434 0.35 -0.3
475,047 + Echvi_0434 0.36 +0.8
475,047 + Echvi_0434 0.36 +0.4
475,048 - Echvi_0434 0.36 +0.3
475,050 - Echvi_0434 0.37 -1.0
475,057 - Echvi_0434 0.37 -0.1
475,065 - Echvi_0434 0.38 -1.7
475,150 - Echvi_0434 0.49 +0.8
475,154 + Echvi_0434 0.50 -2.1
475,155 - Echvi_0434 0.50 -1.2
475,159 - Echvi_0434 0.50 -1.1
475,181 + Echvi_0434 0.53 -0.1
475,181 + Echvi_0434 0.53 -0.1
475,181 + Echvi_0434 0.53 -0.2
475,184 - Echvi_0434 0.53 -0.2
475,184 - Echvi_0434 0.53 -1.0
475,184 - Echvi_0434 0.53 +0.5
475,184 - Echvi_0434 0.53 -0.3
475,184 - Echvi_0434 0.53 -0.9
475,204 - Echvi_0434 0.56 +0.4
475,219 - Echvi_0434 0.58 +0.1
475,230 - Echvi_0434 0.59 +0.1
475,230 - Echvi_0434 0.59 +0.0
475,240 - Echvi_0434 0.60 -0.2
475,247 - Echvi_0434 0.61 -0.2
475,252 - Echvi_0434 0.62 -2.0
475,287 + Echvi_0434 0.66 -0.7
475,313 + Echvi_0434 0.70 -0.9
475,313 + Echvi_0434 0.70 -2.3
475,317 - Echvi_0434 0.70 +1.7
475,365 + Echvi_0434 0.76 -0.4
475,373 + Echvi_0434 0.77 -0.4
475,374 - Echvi_0434 0.77 -0.4
475,377 + Echvi_0434 0.78 -1.2
475,410 - Echvi_0434 0.82 -0.2
475,431 + Echvi_0434 0.84 -1.4
475,432 - Echvi_0434 0.84 -0.3
475,435 - Echvi_0434 0.85 -0.2
475,472 + Echvi_0434 0.89 +0.8
475,539 + -0.3
475,543 + +0.4
475,544 - -0.2
475,544 - -0.1
475,569 + -0.4
475,581 - -0.2
475,584 + -0.1
475,584 + +0.6
475,636 + +0.3
475,680 + -0.5
475,680 + -0.6
475,681 - -0.8
475,681 - -0.5
475,711 - Echvi_0435 0.11 -0.1
475,770 + Echvi_0435 0.16 -0.4
475,811 - Echvi_0435 0.20 +0.4
475,811 - Echvi_0435 0.20 +0.3
475,811 - Echvi_0435 0.20 -0.0
475,889 - Echvi_0435 0.26 +1.6
476,076 - Echvi_0435 0.42 +0.2
476,076 - Echvi_0435 0.42 +0.3
476,076 - Echvi_0435 0.42 +0.6
476,076 - Echvi_0435 0.42 -0.0
476,076 - Echvi_0435 0.42 -0.9
476,076 - Echvi_0435 0.42 +1.3
476,087 - Echvi_0435 0.43 +0.1
476,087 - Echvi_0435 0.43 -0.2
476,201 - Echvi_0435 0.53 +0.6
476,201 - Echvi_0435 0.53 +0.1
476,210 - Echvi_0435 0.54 -0.2
476,266 - Echvi_0435 0.58 -0.2
476,318 + Echvi_0435 0.63 -0.2
476,318 + Echvi_0435 0.63 -1.4
476,319 - Echvi_0435 0.63 -0.6
476,492 + Echvi_0435 0.77 -0.0
476,492 + Echvi_0435 0.77 +0.4
476,552 - Echvi_0435 0.83 +0.3

Or see this region's nucleotide sequence