Experiment: alpha-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0344 and Atu0345 are separated by 190 nucleotides Atu0345 and Atu0346 are separated by 96 nucleotides
Atu0344: Atu0344 - hypothetical protein, at 335,817 to 336,698
Atu0344
Atu0345: Atu0345 - DNA mismatch repair protein, MutS family, at 336,889 to 339,540
Atu0345
Atu0346: Atu0346 - uridylyltransferase/uridylyl-removing enzyme UTase, at 339,637 to 342,465
Atu0346
Position (kb) 336
337
338
339
340 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 335.894 kb on - strand at 335.894 kb on - strand at 335.894 kb on - strand at 335.894 kb on - strand at 335.987 kb on + strand, within Atu0344 at 336.030 kb on + strand, within Atu0344 at 336.182 kb on - strand, within Atu0344 at 336.243 kb on - strand, within Atu0344 at 336.388 kb on - strand, within Atu0344 at 336.455 kb on - strand, within Atu0344 at 336.500 kb on + strand, within Atu0344 at 336.517 kb on - strand, within Atu0344 at 336.546 kb on + strand, within Atu0344 at 336.756 kb on + strand at 336.756 kb on + strand at 336.756 kb on + strand at 336.764 kb on - strand at 336.766 kb on + strand at 336.834 kb on + strand at 336.850 kb on + strand at 336.853 kb on - strand at 336.865 kb on - strand at 336.870 kb on - strand at 336.984 kb on + strand at 337.005 kb on + strand at 337.015 kb on - strand at 337.015 kb on - strand at 337.040 kb on - strand at 337.078 kb on + strand at 337.105 kb on - strand at 337.118 kb on - strand at 337.292 kb on + strand, within Atu0345 at 337.314 kb on + strand, within Atu0345 at 337.336 kb on + strand, within Atu0345 at 337.462 kb on + strand, within Atu0345 at 337.506 kb on - strand, within Atu0345 at 337.513 kb on - strand, within Atu0345 at 337.523 kb on + strand, within Atu0345 at 337.611 kb on + strand, within Atu0345 at 337.673 kb on - strand, within Atu0345 at 337.756 kb on - strand, within Atu0345 at 337.769 kb on + strand, within Atu0345 at 337.777 kb on - strand, within Atu0345 at 337.936 kb on + strand, within Atu0345 at 337.988 kb on + strand, within Atu0345 at 338.016 kb on - strand, within Atu0345 at 338.100 kb on + strand, within Atu0345 at 338.103 kb on - strand, within Atu0345 at 338.110 kb on + strand, within Atu0345 at 338.126 kb on + strand, within Atu0345 at 338.134 kb on - strand, within Atu0345 at 338.134 kb on - strand, within Atu0345 at 338.266 kb on + strand, within Atu0345 at 338.289 kb on + strand, within Atu0345 at 338.309 kb on - strand, within Atu0345 at 338.418 kb on + strand, within Atu0345 at 338.454 kb on - strand, within Atu0345 at 338.474 kb on - strand, within Atu0345 at 338.479 kb on + strand, within Atu0345 at 338.487 kb on - strand, within Atu0345 at 338.487 kb on - strand, within Atu0345 at 338.515 kb on + strand, within Atu0345 at 338.522 kb on - strand, within Atu0345 at 338.552 kb on - strand, within Atu0345 at 338.574 kb on + strand, within Atu0345 at 338.593 kb on - strand, within Atu0345 at 338.853 kb on + strand, within Atu0345 at 338.871 kb on + strand, within Atu0345 at 338.940 kb on - strand, within Atu0345 at 339.230 kb on + strand, within Atu0345 at 339.233 kb on - strand, within Atu0345 at 339.263 kb on + strand, within Atu0345 at 339.314 kb on + strand at 339.322 kb on + strand at 339.390 kb on + strand at 339.425 kb on + strand at 339.459 kb on - strand at 339.469 kb on - strand at 339.486 kb on + strand at 339.503 kb on + strand at 339.513 kb on - strand at 339.534 kb on + strand at 339.542 kb on - strand at 339.542 kb on - strand at 339.550 kb on + strand at 339.598 kb on + strand at 339.610 kb on + strand at 340.029 kb on + strand, within Atu0346
Per-strain Table
Position Strand Gene LocusTag Fraction alpha-Lactose (C) remove 335,894 - -0.9 335,894 - +1.2 335,894 - +0.3 335,894 - -0.6 335,987 + Atu0344 0.19 -0.3 336,030 + Atu0344 0.24 +0.6 336,182 - Atu0344 0.41 +1.7 336,243 - Atu0344 0.48 +0.3 336,388 - Atu0344 0.65 +0.1 336,455 - Atu0344 0.72 -0.8 336,500 + Atu0344 0.77 -0.3 336,517 - Atu0344 0.79 -0.3 336,546 + Atu0344 0.83 +0.4 336,756 + -0.1 336,756 + +0.0 336,756 + -0.1 336,764 - -0.0 336,766 + +0.3 336,834 + +0.1 336,850 + -0.0 336,853 - +0.2 336,865 - +0.2 336,870 - +0.6 336,984 + +0.2 337,005 + +1.6 337,015 - +0.4 337,015 - +0.3 337,040 - -0.4 337,078 + +0.0 337,105 - +0.3 337,118 - +0.2 337,292 + Atu0345 0.15 +0.0 337,314 + Atu0345 0.16 +0.0 337,336 + Atu0345 0.17 -0.4 337,462 + Atu0345 0.22 +1.7 337,506 - Atu0345 0.23 +0.0 337,513 - Atu0345 0.24 +0.0 337,523 + Atu0345 0.24 -0.4 337,611 + Atu0345 0.27 -0.2 337,673 - Atu0345 0.30 -1.3 337,756 - Atu0345 0.33 -1.0 337,769 + Atu0345 0.33 -0.5 337,777 - Atu0345 0.33 -0.2 337,936 + Atu0345 0.39 +0.5 337,988 + Atu0345 0.41 -0.5 338,016 - Atu0345 0.42 +0.2 338,100 + Atu0345 0.46 +0.3 338,103 - Atu0345 0.46 +0.4 338,110 + Atu0345 0.46 +0.0 338,126 + Atu0345 0.47 +1.1 338,134 - Atu0345 0.47 -0.3 338,134 - Atu0345 0.47 +0.7 338,266 + Atu0345 0.52 -0.1 338,289 + Atu0345 0.53 -0.4 338,309 - Atu0345 0.54 +1.3 338,418 + Atu0345 0.58 -1.1 338,454 - Atu0345 0.59 -0.0 338,474 - Atu0345 0.60 -0.1 338,479 + Atu0345 0.60 -0.3 338,487 - Atu0345 0.60 +0.7 338,487 - Atu0345 0.60 -1.2 338,515 + Atu0345 0.61 +0.3 338,522 - Atu0345 0.62 -0.7 338,552 - Atu0345 0.63 -1.1 338,574 + Atu0345 0.64 -0.3 338,593 - Atu0345 0.64 +0.6 338,853 + Atu0345 0.74 +0.2 338,871 + Atu0345 0.75 +0.1 338,940 - Atu0345 0.77 -0.5 339,230 + Atu0345 0.88 -0.1 339,233 - Atu0345 0.88 -1.6 339,263 + Atu0345 0.90 +0.2 339,314 + +0.1 339,322 + -0.4 339,390 + +0.5 339,425 + -0.3 339,459 - -1.6 339,469 - +0.4 339,486 + -0.6 339,503 + -0.7 339,513 - +0.7 339,534 + +0.4 339,542 - +0.2 339,542 - -0.7 339,550 + -0.4 339,598 + +0.4 339,610 + -0.5 340,029 + Atu0346 0.14 -3.4
Or see this region's nucleotide sequence