Experiment: Cytidine (N)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt dapB and carA are separated by 455 nucleotides carA and carB are separated by 17 nucleotides
b0031: dapB - dihydrodipicolinate reductase (NCBI), at 28,374 to 29,195
dapB
b0032: carA - carbamoyl-phosphate synthase small subunit (NCBI), at 29,651 to 30,799
carA
b0033: carB - carbamoyl-phosphate synthase large subunit (NCBI), at 30,817 to 34,038
carB
Position (kb)
29
30
31 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 29.587 kb on + strand at 29.661 kb on - strand at 29.661 kb on - strand at 29.841 kb on + strand, within carA at 29.872 kb on + strand, within carA at 29.931 kb on + strand, within carA at 29.931 kb on + strand, within carA at 30.037 kb on - strand, within carA at 30.104 kb on + strand, within carA at 30.154 kb on + strand, within carA at 30.156 kb on - strand, within carA at 30.156 kb on - strand, within carA at 30.320 kb on + strand, within carA at 30.364 kb on + strand, within carA at 30.364 kb on + strand, within carA at 30.588 kb on + strand, within carA at 30.768 kb on + strand at 30.770 kb on + strand at 30.773 kb on + strand at 30.786 kb on - strand at 30.858 kb on - strand at 30.868 kb on + strand at 30.868 kb on + strand at 30.889 kb on - strand at 30.917 kb on + strand at 30.917 kb on + strand at 31.041 kb on - strand at 31.099 kb on + strand at 31.099 kb on + strand at 31.099 kb on + strand at 31.099 kb on + strand at 31.101 kb on + strand at 31.107 kb on - strand at 31.144 kb on - strand, within carB at 31.151 kb on + strand, within carB at 31.157 kb on - strand, within carB at 31.157 kb on - strand, within carB at 31.161 kb on + strand, within carB at 31.188 kb on - strand, within carB at 31.190 kb on + strand, within carB at 31.242 kb on - strand, within carB at 31.259 kb on - strand, within carB at 31.327 kb on + strand, within carB at 31.327 kb on + strand, within carB at 31.341 kb on + strand, within carB at 31.359 kb on + strand, within carB at 31.359 kb on + strand, within carB at 31.360 kb on + strand, within carB at 31.425 kb on - strand, within carB at 31.466 kb on + strand, within carB at 31.643 kb on + strand, within carB at 31.726 kb on - strand, within carB at 31.748 kb on + strand, within carB
Per-strain Table
Position Strand Gene LocusTag Fraction Cytidine (N) remove 29,587 + -0.3 29,661 - -2.0 29,661 - -3.5 29,841 + carA b0032 0.17 -3.5 29,872 + carA b0032 0.19 -2.3 29,931 + carA b0032 0.24 -1.3 29,931 + carA b0032 0.24 -2.5 30,037 - carA b0032 0.34 -3.0 30,104 + carA b0032 0.39 -3.0 30,154 + carA b0032 0.44 -2.9 30,156 - carA b0032 0.44 -2.5 30,156 - carA b0032 0.44 -2.6 30,320 + carA b0032 0.58 -2.0 30,364 + carA b0032 0.62 -1.7 30,364 + carA b0032 0.62 -2.2 30,588 + carA b0032 0.82 -3.9 30,768 + -0.8 30,770 + -0.2 30,773 + -0.7 30,786 - -1.5 30,858 - -1.2 30,868 + -2.6 30,868 + -2.0 30,889 - -2.5 30,917 + -1.7 30,917 + -2.6 31,041 - -0.2 31,099 + -1.5 31,099 + -2.5 31,099 + -1.5 31,099 + -1.2 31,101 + -3.0 31,107 - -2.5 31,144 - carB b0033 0.10 -3.2 31,151 + carB b0033 0.10 -2.6 31,157 - carB b0033 0.11 -1.1 31,157 - carB b0033 0.11 -1.7 31,161 + carB b0033 0.11 -0.7 31,188 - carB b0033 0.12 -2.7 31,190 + carB b0033 0.12 -2.9 31,242 - carB b0033 0.13 -2.2 31,259 - carB b0033 0.14 -1.7 31,327 + carB b0033 0.16 -1.7 31,327 + carB b0033 0.16 -3.2 31,341 + carB b0033 0.16 -2.2 31,359 + carB b0033 0.17 -2.2 31,359 + carB b0033 0.17 -1.8 31,360 + carB b0033 0.17 -3.6 31,425 - carB b0033 0.19 -2.1 31,466 + carB b0033 0.20 -1.5 31,643 + carB b0033 0.26 -3.3 31,726 - carB b0033 0.28 -0.2 31,748 + carB b0033 0.29 +0.8
Or see this region's nucleotide sequence