Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4012

Experiment: m.b. Spectinomycin 0.12 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Spectinomycin 0.12 mg/ml
4,802,587	+		Echvi_4010	0.53	+0.2
4,802,639	-		Echvi_4010	0.65	+0.5
4,802,671	+		Echvi_4010	0.73	+0.9
4,802,692	-		Echvi_4010	0.78	+0.6
4,802,750	+				-1.0
4,802,750	+				+2.0
4,802,750	+				+1.8
4,802,751	-				-2.0
4,802,751	-				-1.2
4,802,751	-				-3.5
4,802,751	-				-0.1
4,802,886	+				+0.8
4,802,886	+				-0.0
4,802,938	+				-0.6
4,802,949	+				+1.6
4,802,949	+				-1.2
4,802,949	+				-0.2
4,802,949	+				+0.9
4,803,023	+				-1.0
4,803,023	+				+0.6
4,803,041	+				+0.3
4,803,041	+				-0.7
4,803,111	+		Echvi_4011	0.14	+0.1
4,803,136	+		Echvi_4011	0.20	-0.1
4,803,136	+		Echvi_4011	0.20	-0.0
4,803,136	+		Echvi_4011	0.20	+0.0
4,803,138	+		Echvi_4011	0.21	+0.0
4,803,138	+		Echvi_4011	0.21	+0.9
4,803,139	-		Echvi_4011	0.21	-2.0
4,803,139	-		Echvi_4011	0.21	-0.7
4,803,198	+		Echvi_4011	0.37	+1.4
4,803,199	-		Echvi_4011	0.37	-0.2
4,803,199	-		Echvi_4011	0.37	+0.4
4,803,208	+		Echvi_4011	0.39	+2.6
4,803,242	+		Echvi_4011	0.49	+0.5
4,803,242	+		Echvi_4011	0.49	+0.2
4,803,243	-		Echvi_4011	0.49	+0.3
4,803,348	-		Echvi_4011	0.77	-1.7
4,803,353	+		Echvi_4011	0.78	-0.4
4,803,353	+		Echvi_4011	0.78	+2.2
4,803,354	-		Echvi_4011	0.78	+0.2
4,803,390	+		Echvi_4011	0.88	+0.0
4,803,390	+		Echvi_4011	0.88	+0.3
4,803,391	-		Echvi_4011	0.88	+0.4
4,803,448	+				+0.7
4,803,449	-				-0.7
4,803,449	-				+0.7
4,803,449	-				-0.4
4,803,506	+				-0.2
4,803,507	-				-0.9
4,803,507	-				-0.3
4,803,578	-				-0.4
4,803,662	+		Echvi_4012	0.11	+0.3
4,803,693	-		Echvi_4012	0.13	-0.7
4,803,700	-		Echvi_4012	0.14	-0.6
4,803,740	-		Echvi_4012	0.17	+0.8
4,803,743	+		Echvi_4012	0.17	-1.7
4,803,759	-		Echvi_4012	0.18	+0.4
4,803,785	+		Echvi_4012	0.20	+0.5
4,803,920	+		Echvi_4012	0.31	-1.4
4,803,979	+		Echvi_4012	0.36	+0.4
4,804,013	+		Echvi_4012	0.38	+1.2
4,804,105	+		Echvi_4012	0.46	-1.0
4,804,111	+		Echvi_4012	0.46	+1.2
4,804,112	-		Echvi_4012	0.46	+0.4
4,804,172	-		Echvi_4012	0.51	-0.1
4,804,175	+		Echvi_4012	0.51	+0.3
4,804,176	-		Echvi_4012	0.51	+1.2
4,804,203	-		Echvi_4012	0.53	+1.1
4,804,213	+		Echvi_4012	0.54	-2.5
4,804,213	+		Echvi_4012	0.54	+0.9
4,804,232	+		Echvi_4012	0.56	+0.2
4,804,233	-		Echvi_4012	0.56	+0.2
4,804,233	-		Echvi_4012	0.56	-0.4
4,804,330	-		Echvi_4012	0.63	-0.1
4,804,613	-		Echvi_4012	0.86	-2.3
4,804,664	+		Echvi_4012	0.90	+0.6
4,804,674	+				-0.7
4,804,675	-				-0.2
4,804,716	+				+1.5
4,804,760	-				-1.0
4,804,760	-				-0.1
4,804,764	+				+1.4
4,804,826	-				-0.2
4,804,827	+				-2.0
4,804,827	+				-0.3
4,804,827	+				-1.2
4,804,827	+				-0.2
4,804,915	+				-0.1
4,804,917	+				+0.8
4,804,917	+				-1.1
4,805,014	-				-2.1
4,805,014	-				-1.9
4,805,036	+				+1.5
4,805,079	-				+0.7
4,805,082	+				+2.0
4,805,154	+				-0.6
4,805,155	-				-0.9
4,805,155	-				-1.4
4,805,196	+				-0.1
4,805,248	-				-2.1
4,805,248	-				+1.9
4,805,270	-				+2.2
4,805,270	-				+0.7
4,805,275	-				+1.0
4,805,319	+				+0.6
4,805,356	+				-0.8
4,805,370	+				+0.1
4,805,370	+				-0.6
4,805,434	-				-0.8
4,805,434	-				+0.3
4,805,437	+				-0.1
4,805,438	-				+2.0
4,805,439	+				+1.0
4,805,513	+				-1.2
4,805,513	+				+1.0
4,805,540	+		Echvi_4013	0.11	+0.1
4,805,541	-		Echvi_4013	0.12	+0.3
4,805,555	-		Echvi_4013	0.14	-1.0
4,805,555	-		Echvi_4013	0.14	-0.4
4,805,561	+		Echvi_4013	0.16	+0.4
4,805,561	+		Echvi_4013	0.16	-0.3
4,805,561	+		Echvi_4013	0.16	+0.8
4,805,567	+		Echvi_4013	0.17	-0.1
4,805,787	+		Echvi_4013	0.63	-0.4
4,805,788	-		Echvi_4013	0.63	-0.6
4,805,788	-		Echvi_4013	0.63	+0.2
4,805,788	-		Echvi_4013	0.63	-0.5