Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3797

Experiment: m.b. Spectinomycin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_3795 and Echvi_3796 overlap by 1 nucleotidesEchvi_3796 and Echvi_3797 are separated by 7 nucleotidesEchvi_3797 and Echvi_3798 are separated by 37 nucleotides Echvi_3795: Echvi_3795 - Glycosyltransferase, at 4,528,596 to 4,529,747 _3795 Echvi_3796: Echvi_3796 - Polysaccharide pyruvyl transferase., at 4,529,747 to 4,530,658 _3796 Echvi_3797: Echvi_3797 - Na+-driven multidrug efflux pump, at 4,530,666 to 4,532,213 _3797 Echvi_3798: Echvi_3798 - Mannose-1-phosphate guanylyltransferase, at 4,532,251 to 4,533,252 _3798 Position (kb) 4530 4531 4532 4533Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4529.691 kb on + strandat 4529.691 kb on + strandat 4529.693 kb on + strandat 4529.694 kb on - strandat 4529.694 kb on - strandat 4529.695 kb on + strandat 4529.695 kb on + strandat 4529.695 kb on + strandat 4529.695 kb on + strandat 4529.696 kb on - strandat 4529.696 kb on - strandat 4529.696 kb on - strandat 4529.726 kb on - strandat 4529.726 kb on - strandat 4529.734 kb on + strandat 4529.734 kb on + strandat 4529.734 kb on + strandat 4529.735 kb on - strandat 4529.735 kb on - strandat 4529.735 kb on - strandat 4529.735 kb on - strandat 4529.736 kb on + strandat 4529.736 kb on + strandat 4529.737 kb on - strandat 4529.739 kb on + strandat 4529.739 kb on + strandat 4529.739 kb on + strandat 4529.739 kb on + strandat 4529.739 kb on + strandat 4529.740 kb on - strandat 4529.740 kb on - strandat 4529.740 kb on - strandat 4529.740 kb on - strandat 4529.740 kb on - strandat 4529.799 kb on - strandat 4529.799 kb on - strandat 4529.819 kb on + strandat 4529.844 kb on + strand, within Echvi_3796at 4529.844 kb on + strand, within Echvi_3796at 4529.844 kb on + strand, within Echvi_3796at 4529.844 kb on + strand, within Echvi_3796at 4529.844 kb on + strand, within Echvi_3796at 4529.845 kb on - strand, within Echvi_3796at 4529.848 kb on + strand, within Echvi_3796at 4529.851 kb on + strand, within Echvi_3796at 4529.933 kb on - strand, within Echvi_3796at 4529.982 kb on + strand, within Echvi_3796at 4529.982 kb on + strand, within Echvi_3796at 4529.983 kb on - strand, within Echvi_3796at 4529.983 kb on - strand, within Echvi_3796at 4529.983 kb on - strand, within Echvi_3796at 4530.035 kb on - strand, within Echvi_3796at 4530.061 kb on + strand, within Echvi_3796at 4530.062 kb on - strand, within Echvi_3796at 4530.063 kb on + strand, within Echvi_3796at 4530.107 kb on - strand, within Echvi_3796at 4530.161 kb on + strand, within Echvi_3796at 4530.175 kb on + strand, within Echvi_3796at 4530.210 kb on + strand, within Echvi_3796at 4530.210 kb on + strand, within Echvi_3796at 4530.210 kb on + strand, within Echvi_3796at 4530.211 kb on - strand, within Echvi_3796at 4530.211 kb on - strand, within Echvi_3796at 4530.211 kb on - strand, within Echvi_3796at 4530.211 kb on - strand, within Echvi_3796at 4530.215 kb on + strand, within Echvi_3796at 4530.215 kb on + strand, within Echvi_3796at 4530.216 kb on - strand, within Echvi_3796at 4530.218 kb on - strand, within Echvi_3796at 4530.265 kb on + strand, within Echvi_3796at 4530.270 kb on + strand, within Echvi_3796at 4530.271 kb on - strand, within Echvi_3796at 4530.291 kb on + strand, within Echvi_3796at 4530.292 kb on - strand, within Echvi_3796at 4530.345 kb on + strand, within Echvi_3796at 4530.345 kb on + strand, within Echvi_3796at 4530.345 kb on + strand, within Echvi_3796at 4530.346 kb on - strand, within Echvi_3796at 4530.361 kb on + strand, within Echvi_3796at 4530.376 kb on + strand, within Echvi_3796at 4530.380 kb on - strand, within Echvi_3796at 4530.448 kb on + strand, within Echvi_3796at 4530.448 kb on + strand, within Echvi_3796at 4530.449 kb on - strand, within Echvi_3796at 4530.449 kb on - strand, within Echvi_3796at 4530.449 kb on - strand, within Echvi_3796at 4530.450 kb on + strand, within Echvi_3796at 4530.450 kb on + strand, within Echvi_3796at 4530.450 kb on + strand, within Echvi_3796at 4530.451 kb on - strand, within Echvi_3796at 4530.451 kb on - strand, within Echvi_3796at 4530.508 kb on + strand, within Echvi_3796at 4530.509 kb on - strand, within Echvi_3796at 4530.509 kb on - strand, within Echvi_3796at 4530.509 kb on - strand, within Echvi_3796at 4530.515 kb on - strand, within Echvi_3796at 4530.515 kb on - strand, within Echvi_3796at 4530.517 kb on + strand, within Echvi_3796at 4530.517 kb on + strand, within Echvi_3796at 4530.517 kb on + strand, within Echvi_3796at 4530.517 kb on + strand, within Echvi_3796at 4530.517 kb on + strand, within Echvi_3796at 4530.518 kb on - strand, within Echvi_3796at 4530.518 kb on - strand, within Echvi_3796at 4530.528 kb on - strand, within Echvi_3796at 4530.640 kb on + strandat 4530.641 kb on - strandat 4530.641 kb on - strandat 4530.641 kb on - strandat 4530.647 kb on + strandat 4530.647 kb on + strandat 4530.647 kb on + strandat 4530.647 kb on + strandat 4530.648 kb on - strandat 4530.651 kb on + strandat 4530.651 kb on + strandat 4530.658 kb on + strandat 4530.658 kb on + strandat 4530.658 kb on + strandat 4530.659 kb on - strandat 4530.659 kb on - strandat 4530.667 kb on + strandat 4530.671 kb on + strandat 4530.768 kb on + strandat 4530.849 kb on + strand, within Echvi_3797at 4530.850 kb on - strand, within Echvi_3797at 4530.850 kb on - strand, within Echvi_3797at 4530.950 kb on - strand, within Echvi_3797at 4530.958 kb on - strand, within Echvi_3797at 4530.972 kb on - strand, within Echvi_3797at 4530.988 kb on + strand, within Echvi_3797at 4531.084 kb on + strand, within Echvi_3797at 4531.146 kb on - strand, within Echvi_3797at 4531.504 kb on - strand, within Echvi_3797at 4531.520 kb on - strand, within Echvi_3797at 4531.536 kb on + strand, within Echvi_3797at 4531.552 kb on - strand, within Echvi_3797at 4531.610 kb on - strand, within Echvi_3797at 4531.654 kb on + strand, within Echvi_3797at 4531.655 kb on - strand, within Echvi_3797at 4531.667 kb on + strand, within Echvi_3797at 4531.667 kb on + strand, within Echvi_3797at 4531.667 kb on + strand, within Echvi_3797at 4531.667 kb on + strand, within Echvi_3797at 4531.667 kb on + strand, within Echvi_3797at 4531.744 kb on + strand, within Echvi_3797at 4531.744 kb on + strand, within Echvi_3797at 4531.744 kb on + strand, within Echvi_3797at 4531.745 kb on - strand, within Echvi_3797at 4531.778 kb on + strand, within Echvi_3797at 4531.778 kb on + strand, within Echvi_3797at 4531.783 kb on - strand, within Echvi_3797at 4531.890 kb on + strand, within Echvi_3797at 4531.977 kb on + strand, within Echvi_3797at 4531.977 kb on + strand, within Echvi_3797at 4532.092 kb on + strandat 4532.191 kb on - strandat 4532.243 kb on + strandat 4532.243 kb on + strandat 4532.243 kb on + strandat 4532.244 kb on - strandat 4532.244 kb on - strandat 4532.349 kb on + strandat 4532.364 kb on + strand, within Echvi_3798at 4532.364 kb on + strand, within Echvi_3798at 4532.380 kb on - strand, within Echvi_3798at 4532.453 kb on + strand, within Echvi_3798at 4532.459 kb on + strand, within Echvi_3798at 4532.460 kb on - strand, within Echvi_3798at 4532.460 kb on - strand, within Echvi_3798at 4532.506 kb on + strand, within Echvi_3798at 4532.506 kb on + strand, within Echvi_3798at 4532.507 kb on - strand, within Echvi_3798at 4532.543 kb on + strand, within Echvi_3798at 4532.605 kb on - strandat 4532.610 kb on + strand, within Echvi_3798at 4532.610 kb on + strand, within Echvi_3798at 4532.610 kb on + strand, within Echvi_3798at 4532.611 kb on - strand, within Echvi_3798at 4532.612 kb on + strand, within Echvi_3798at 4532.612 kb on + strand, within Echvi_3798at 4532.612 kb on + strand, within Echvi_3798at 4532.612 kb on + strand, within Echvi_3798at 4532.612 kb on + strand, within Echvi_3798at 4532.612 kb on + strand, within Echvi_3798at 4532.612 kb on + strand, within Echvi_3798at 4532.613 kb on - strand, within Echvi_3798at 4532.613 kb on - strand, within Echvi_3798at 4532.613 kb on - strand, within Echvi_3798at 4532.613 kb on - strand, within Echvi_3798at 4532.613 kb on - strand, within Echvi_3798at 4532.613 kb on - strand, within Echvi_3798at 4532.648 kb on + strand, within Echvi_3798at 4532.712 kb on - strand, within Echvi_3798at 4532.799 kb on - strand, within Echvi_3798at 4532.870 kb on - strand, within Echvi_3798at 4532.911 kb on + strand, within Echvi_3798at 4532.911 kb on + strand, within Echvi_3798at 4532.992 kb on - strand, within Echvi_3798at 4533.068 kb on + strand, within Echvi_3798at 4533.069 kb on - strand, within Echvi_3798at 4533.069 kb on - strand, within Echvi_3798at 4533.072 kb on + strand, within Echvi_3798at 4533.073 kb on - strand, within Echvi_3798at 4533.073 kb on - strand, within Echvi_3798at 4533.078 kb on + strand, within Echvi_3798at 4533.094 kb on + strand, within Echvi_3798at 4533.095 kb on - strand, within Echvi_3798at 4533.095 kb on - strand, within Echvi_3798at 4533.167 kb on + strandat 4533.168 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.12 mg/ml
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4,529,691 + +0.4
4,529,691 + -0.8
4,529,693 + -2.2
4,529,694 - -1.9
4,529,694 - +0.9
4,529,695 + +0.1
4,529,695 + +0.2
4,529,695 + -0.1
4,529,695 + -1.3
4,529,696 - -0.7
4,529,696 - -0.7
4,529,696 - -0.5
4,529,726 - +0.1
4,529,726 - -0.1
4,529,734 + -0.3
4,529,734 + +0.6
4,529,734 + -2.1
4,529,735 - +0.6
4,529,735 - +0.0
4,529,735 - -0.8
4,529,735 - +0.2
4,529,736 + +0.4
4,529,736 + -0.6
4,529,737 - -1.6
4,529,739 + -0.5
4,529,739 + -0.4
4,529,739 + +0.1
4,529,739 + -0.4
4,529,739 + +1.2
4,529,740 - -0.6
4,529,740 - +0.6
4,529,740 - +0.0
4,529,740 - -0.5
4,529,740 - +1.0
4,529,799 - +0.2
4,529,799 - -0.3
4,529,819 + -0.8
4,529,844 + Echvi_3796 0.11 +0.8
4,529,844 + Echvi_3796 0.11 +0.2
4,529,844 + Echvi_3796 0.11 +1.0
4,529,844 + Echvi_3796 0.11 -0.8
4,529,844 + Echvi_3796 0.11 +0.0
4,529,845 - Echvi_3796 0.11 +0.9
4,529,848 + Echvi_3796 0.11 -0.2
4,529,851 + Echvi_3796 0.11 +0.7
4,529,933 - Echvi_3796 0.20 +0.1
4,529,982 + Echvi_3796 0.26 +1.0
4,529,982 + Echvi_3796 0.26 +0.1
4,529,983 - Echvi_3796 0.26 +0.6
4,529,983 - Echvi_3796 0.26 -0.7
4,529,983 - Echvi_3796 0.26 +0.4
4,530,035 - Echvi_3796 0.32 -0.4
4,530,061 + Echvi_3796 0.34 -0.1
4,530,062 - Echvi_3796 0.35 +0.1
4,530,063 + Echvi_3796 0.35 +0.2
4,530,107 - Echvi_3796 0.39 +0.5
4,530,161 + Echvi_3796 0.45 +0.1
4,530,175 + Echvi_3796 0.47 -1.1
4,530,210 + Echvi_3796 0.51 -0.6
4,530,210 + Echvi_3796 0.51 +0.6
4,530,210 + Echvi_3796 0.51 +2.8
4,530,211 - Echvi_3796 0.51 +0.4
4,530,211 - Echvi_3796 0.51 -0.6
4,530,211 - Echvi_3796 0.51 -0.9
4,530,211 - Echvi_3796 0.51 +1.4
4,530,215 + Echvi_3796 0.51 +1.6
4,530,215 + Echvi_3796 0.51 -1.7
4,530,216 - Echvi_3796 0.51 -2.0
4,530,218 - Echvi_3796 0.52 -0.8
4,530,265 + Echvi_3796 0.57 -1.9
4,530,270 + Echvi_3796 0.57 -1.7
4,530,271 - Echvi_3796 0.57 -1.4
4,530,291 + Echvi_3796 0.60 -0.1
4,530,292 - Echvi_3796 0.60 -0.4
4,530,345 + Echvi_3796 0.66 -0.4
4,530,345 + Echvi_3796 0.66 -0.6
4,530,345 + Echvi_3796 0.66 +0.5
4,530,346 - Echvi_3796 0.66 +0.0
4,530,361 + Echvi_3796 0.67 +0.3
4,530,376 + Echvi_3796 0.69 +0.3
4,530,380 - Echvi_3796 0.69 +0.4
4,530,448 + Echvi_3796 0.77 -0.8
4,530,448 + Echvi_3796 0.77 +0.7
4,530,449 - Echvi_3796 0.77 -0.5
4,530,449 - Echvi_3796 0.77 -0.5
4,530,449 - Echvi_3796 0.77 -0.4
4,530,450 + Echvi_3796 0.77 +0.1
4,530,450 + Echvi_3796 0.77 -0.4
4,530,450 + Echvi_3796 0.77 -0.2
4,530,451 - Echvi_3796 0.77 -0.7
4,530,451 - Echvi_3796 0.77 +0.9
4,530,508 + Echvi_3796 0.83 -1.0
4,530,509 - Echvi_3796 0.84 -0.4
4,530,509 - Echvi_3796 0.84 +1.3
4,530,509 - Echvi_3796 0.84 +0.3
4,530,515 - Echvi_3796 0.84 +0.0
4,530,515 - Echvi_3796 0.84 -2.2
4,530,517 + Echvi_3796 0.84 -1.9
4,530,517 + Echvi_3796 0.84 +2.6
4,530,517 + Echvi_3796 0.84 -0.3
4,530,517 + Echvi_3796 0.84 -0.6
4,530,517 + Echvi_3796 0.84 -0.4
4,530,518 - Echvi_3796 0.85 +0.8
4,530,518 - Echvi_3796 0.85 +0.0
4,530,528 - Echvi_3796 0.86 -0.4
4,530,640 + -0.4
4,530,641 - +0.1
4,530,641 - +0.2
4,530,641 - -0.7
4,530,647 + -0.3
4,530,647 + -0.4
4,530,647 + -1.0
4,530,647 + -0.1
4,530,648 - +0.9
4,530,651 + +0.7
4,530,651 + +0.4
4,530,658 + -0.1
4,530,658 + -0.3
4,530,658 + +1.1
4,530,659 - -0.4
4,530,659 - +1.4
4,530,667 + -2.2
4,530,671 + +0.1
4,530,768 + +0.9
4,530,849 + Echvi_3797 0.12 +0.1
4,530,850 - Echvi_3797 0.12 -0.4
4,530,850 - Echvi_3797 0.12 +0.0
4,530,950 - Echvi_3797 0.18 +0.9
4,530,958 - Echvi_3797 0.19 +0.8
4,530,972 - Echvi_3797 0.20 -0.2
4,530,988 + Echvi_3797 0.21 -0.8
4,531,084 + Echvi_3797 0.27 +1.6
4,531,146 - Echvi_3797 0.31 -0.3
4,531,504 - Echvi_3797 0.54 +0.1
4,531,520 - Echvi_3797 0.55 -1.7
4,531,536 + Echvi_3797 0.56 -0.8
4,531,552 - Echvi_3797 0.57 +0.3
4,531,610 - Echvi_3797 0.61 -2.1
4,531,654 + Echvi_3797 0.64 -0.3
4,531,655 - Echvi_3797 0.64 -1.1
4,531,667 + Echvi_3797 0.65 -0.1
4,531,667 + Echvi_3797 0.65 -1.4
4,531,667 + Echvi_3797 0.65 -0.6
4,531,667 + Echvi_3797 0.65 -0.4
4,531,667 + Echvi_3797 0.65 -0.4
4,531,744 + Echvi_3797 0.70 -1.1
4,531,744 + Echvi_3797 0.70 -1.9
4,531,744 + Echvi_3797 0.70 -0.6
4,531,745 - Echvi_3797 0.70 +0.1
4,531,778 + Echvi_3797 0.72 -0.8
4,531,778 + Echvi_3797 0.72 +0.7
4,531,783 - Echvi_3797 0.72 -0.8
4,531,890 + Echvi_3797 0.79 +0.4
4,531,977 + Echvi_3797 0.85 -1.3
4,531,977 + Echvi_3797 0.85 +0.6
4,532,092 + +0.4
4,532,191 - +1.6
4,532,243 + -0.9
4,532,243 + -0.3
4,532,243 + -0.1
4,532,244 - -0.9
4,532,244 - +1.6
4,532,349 + -0.9
4,532,364 + Echvi_3798 0.11 -0.4
4,532,364 + Echvi_3798 0.11 -0.4
4,532,380 - Echvi_3798 0.13 -0.9
4,532,453 + Echvi_3798 0.20 -0.3
4,532,459 + Echvi_3798 0.21 -0.0
4,532,460 - Echvi_3798 0.21 -0.9
4,532,460 - Echvi_3798 0.21 -1.2
4,532,506 + Echvi_3798 0.25 -0.6
4,532,506 + Echvi_3798 0.25 +0.7
4,532,507 - Echvi_3798 0.26 +1.0
4,532,543 + Echvi_3798 0.29 -0.2
4,532,605 - +0.0
4,532,610 + Echvi_3798 0.36 -0.1
4,532,610 + Echvi_3798 0.36 +0.1
4,532,610 + Echvi_3798 0.36 +0.0
4,532,611 - Echvi_3798 0.36 +0.5
4,532,612 + Echvi_3798 0.36 +0.2
4,532,612 + Echvi_3798 0.36 -0.9
4,532,612 + Echvi_3798 0.36 +0.5
4,532,612 + Echvi_3798 0.36 +0.5
4,532,612 + Echvi_3798 0.36 +0.4
4,532,612 + Echvi_3798 0.36 +0.4
4,532,612 + Echvi_3798 0.36 +0.9
4,532,613 - Echvi_3798 0.36 -0.4
4,532,613 - Echvi_3798 0.36 -0.8
4,532,613 - Echvi_3798 0.36 -0.5
4,532,613 - Echvi_3798 0.36 +0.1
4,532,613 - Echvi_3798 0.36 +1.2
4,532,613 - Echvi_3798 0.36 -0.5
4,532,648 + Echvi_3798 0.40 -1.5
4,532,712 - Echvi_3798 0.46 -0.2
4,532,799 - Echvi_3798 0.55 -0.6
4,532,870 - Echvi_3798 0.62 +1.6
4,532,911 + Echvi_3798 0.66 -0.3
4,532,911 + Echvi_3798 0.66 +0.5
4,532,992 - Echvi_3798 0.74 -0.6
4,533,068 + Echvi_3798 0.82 -1.1
4,533,069 - Echvi_3798 0.82 +0.4
4,533,069 - Echvi_3798 0.82 +0.6
4,533,072 + Echvi_3798 0.82 +0.9
4,533,073 - Echvi_3798 0.82 -0.4
4,533,073 - Echvi_3798 0.82 -1.3
4,533,078 + Echvi_3798 0.83 +0.6
4,533,094 + Echvi_3798 0.84 -1.4
4,533,095 - Echvi_3798 0.84 +0.9
4,533,095 - Echvi_3798 0.84 -1.7
4,533,167 + +0.2
4,533,168 - -0.1

Or see this region's nucleotide sequence