Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_2230

Experiment: m.b. Spectinomycin 0.12 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Spectinomycin 0.12 mg/ml
2,653,396	-				-0.5
2,653,396	-				-0.8
2,653,485	+				+0.6
2,653,486	-				+1.0
2,653,602	+		Echvi_2229	0.17	+0.8
2,653,602	+		Echvi_2229	0.17	-0.9
2,653,602	+		Echvi_2229	0.17	-1.7
2,653,603	-		Echvi_2229	0.17	+0.6
2,653,659	-		Echvi_2229	0.24	+0.7
2,653,659	-		Echvi_2229	0.24	+0.1
2,653,693	+		Echvi_2229	0.29	-0.2
2,653,761	+		Echvi_2229	0.38	-0.5
2,653,762	-		Echvi_2229	0.38	-1.2
2,653,762	-		Echvi_2229	0.38	-2.4
2,653,795	+		Echvi_2229	0.42	-2.2
2,653,840	-		Echvi_2229	0.48	-0.5
2,653,842	-		Echvi_2229	0.49	-1.5
2,653,881	-		Echvi_2229	0.54	-0.4
2,653,881	-		Echvi_2229	0.54	-0.8
2,653,974	+		Echvi_2229	0.66	+1.5
2,653,975	-		Echvi_2229	0.66	+0.6
2,654,015	+		Echvi_2229	0.72	+0.2
2,654,051	+		Echvi_2229	0.77	+2.1
2,654,052	-		Echvi_2229	0.77	+1.0
2,654,072	+		Echvi_2229	0.79	-1.2
2,654,073	-		Echvi_2229	0.79	+2.4
2,654,232	+				-1.2
2,654,233	-				-0.6
2,654,233	-				-1.8
2,654,233	-				-0.2
2,654,233	-				-0.9
2,654,236	+				+0.8
2,654,236	+				+0.2
2,654,286	+				+1.5
2,654,331	+				+1.1
2,654,331	+				+2.4
2,654,332	-				-1.1
2,654,352	+				+0.9
2,654,353	-				+0.8
2,654,378	+				-0.1
2,654,384	+				+0.9
2,654,384	+				+1.6
2,654,536	+		Echvi_2230	0.14	-1.4
2,654,536	+		Echvi_2230	0.14	-1.1
2,654,537	-		Echvi_2230	0.14	-0.9
2,654,538	+		Echvi_2230	0.14	-0.4
2,654,614	+		Echvi_2230	0.21	+2.6
2,654,614	+		Echvi_2230	0.21	-0.4
2,654,625	-		Echvi_2230	0.22	-0.0
2,654,657	-		Echvi_2230	0.25	-0.6
2,654,717	-		Echvi_2230	0.31	-0.2
2,654,717	-		Echvi_2230	0.31	-0.9
2,654,839	+		Echvi_2230	0.42	-0.2
2,655,026	-		Echvi_2230	0.60	-0.1
2,655,053	-		Echvi_2230	0.63	-1.0
2,655,053	-		Echvi_2230	0.63	-0.2
2,655,187	-		Echvi_2230	0.75	-0.2
2,655,263	+		Echvi_2230	0.83	-0.1
2,655,263	+		Echvi_2230	0.83	-1.1
2,655,263	+		Echvi_2230	0.83	+0.5
2,655,264	-		Echvi_2230	0.83	+0.3
2,655,264	-		Echvi_2230	0.83	-1.0
2,655,264	-		Echvi_2230	0.83	+1.1
2,655,427	+				+1.6
2,655,486	+				-0.0
2,655,487	-				+0.3
2,655,487	-				-0.4
2,655,532	-				+0.5
2,655,542	-				-1.0
2,655,550	+				+1.6
2,655,551	-				+0.5
2,655,551	-				+0.2
2,655,565	-				-1.9
2,655,591	+				+0.4
2,655,591	+				+0.8
2,655,591	+				+0.1
2,655,597	-				-1.7
2,655,642	+		Echvi_2231	0.13	-1.2
2,655,642	+		Echvi_2231	0.13	+0.1
2,655,642	+		Echvi_2231	0.13	+0.8
2,655,642	+		Echvi_2231	0.13	-0.3
2,655,643	-		Echvi_2231	0.14	-1.1
2,655,643	-		Echvi_2231	0.14	-0.6
2,655,735	+		Echvi_2231	0.21	-0.1
2,655,736	-		Echvi_2231	0.21	-0.3
2,655,736	-		Echvi_2231	0.21	-0.4
2,655,777	-		Echvi_2231	0.24	-0.9
2,655,783	+		Echvi_2231	0.24	+0.2
2,655,792	-		Echvi_2231	0.25	-0.2
2,655,914	+		Echvi_2231	0.34	+0.9
2,655,914	+		Echvi_2231	0.34	-0.4
2,655,960	+		Echvi_2231	0.38	-0.1
2,655,960	+		Echvi_2231	0.38	-1.8
2,655,964	+		Echvi_2231	0.38	-1.0
2,655,965	-		Echvi_2231	0.38	+2.4
2,655,986	-		Echvi_2231	0.40	+0.4
2,656,040	+		Echvi_2231	0.44	+1.1
2,656,041	-		Echvi_2231	0.44	-1.2
2,656,082	-		Echvi_2231	0.47	-1.2
2,656,119	+		Echvi_2231	0.50	+1.4
2,656,119	+		Echvi_2231	0.50	+0.6
2,656,120	-		Echvi_2231	0.50	-1.6
2,656,120	-		Echvi_2231	0.50	-0.1
2,656,120	-		Echvi_2231	0.50	-0.2
2,656,120	-		Echvi_2231	0.50	+0.6
2,656,120	-		Echvi_2231	0.50	-0.7
2,656,120	-		Echvi_2231	0.50	-0.8
2,656,134	+		Echvi_2231	0.51	-2.6
2,656,134	+		Echvi_2231	0.51	-1.1
2,656,135	-		Echvi_2231	0.51	+0.8
2,656,138	-		Echvi_2231	0.52	-0.6
2,656,138	-		Echvi_2231	0.52	-0.4
2,656,150	+		Echvi_2231	0.52	+0.6
2,656,269	+		Echvi_2231	0.62	-0.8
2,656,300	-		Echvi_2231	0.64	-2.3
2,656,306	-		Echvi_2231	0.64	+1.2
2,656,308	+		Echvi_2231	0.65	+2.6
2,656,308	+		Echvi_2231	0.65	-0.3
2,656,309	-		Echvi_2231	0.65	-0.3
2,656,309	-		Echvi_2231	0.65	-0.4
2,656,309	-		Echvi_2231	0.65	-0.2
2,656,311	+		Echvi_2231	0.65	+0.8
2,656,311	+		Echvi_2231	0.65	-1.5
2,656,312	-		Echvi_2231	0.65	+0.8
2,656,378	+		Echvi_2231	0.70	+2.1
2,656,383	+		Echvi_2231	0.70	+0.0
2,656,383	+		Echvi_2231	0.70	-0.4
2,656,383	+		Echvi_2231	0.70	+0.9