Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1369

Experiment: m.b. Spectinomycin 0.12 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Spectinomycin 0.12 mg/ml
1,572,045	-		Echvi_1367	0.69	-0.3
1,572,066	+		Echvi_1367	0.71	-1.0
1,572,066	+		Echvi_1367	0.71	+1.1
1,572,067	-		Echvi_1367	0.72	-0.7
1,572,067	-		Echvi_1367	0.72	-0.8
1,572,067	-		Echvi_1367	0.72	+0.8
1,572,067	-		Echvi_1367	0.72	+0.8
1,572,070	-		Echvi_1367	0.72	+0.7
1,572,081	+		Echvi_1367	0.73	+0.8
1,572,085	-		Echvi_1367	0.74	+0.3
1,572,176	+		Echvi_1367	0.84	-1.4
1,572,261	-				-0.8
1,572,282	+				-0.2
1,572,283	-				-0.3
1,572,315	-				-0.6
1,572,315	-				+0.4
1,572,315	-				+0.8
1,572,315	-				+1.8
1,572,391	+				-0.0
1,572,391	+				-0.8
1,572,507	+				+0.3
1,572,508	-				+0.3
1,572,527	+				-0.8
1,572,552	-				+0.1
1,572,631	+		Echvi_1368	0.19	+1.6
1,572,631	+		Echvi_1368	0.19	-0.3
1,572,739	+		Echvi_1368	0.49	+0.1
1,572,739	+		Echvi_1368	0.49	+0.7
1,572,740	-		Echvi_1368	0.49	+0.1
1,572,802	+		Echvi_1368	0.66	+0.8
1,572,802	+		Echvi_1368	0.66	-1.1
1,572,947	-				-1.7
1,572,947	-				+0.0
1,572,949	+				-0.0
1,572,949	+				+0.8
1,572,955	+				-0.2
1,573,000	+				+0.1
1,573,000	+				+0.2
1,573,000	+				-0.1
1,573,000	+				+0.4
1,573,001	-				-0.3
1,573,005	-				-1.4
1,573,012	+				+0.4
1,573,013	-				-0.3
1,573,013	-				+0.2
1,573,039	+				+0.9
1,573,040	-				-1.8
1,573,101	+		Echvi_1369	0.13	-1.0
1,573,107	-		Echvi_1369	0.13	+1.4
1,573,269	-		Echvi_1369	0.31	-1.2
1,573,273	+		Echvi_1369	0.32	-0.4
1,573,274	-		Echvi_1369	0.32	-0.3
1,573,276	+		Echvi_1369	0.32	-2.0
1,573,296	-		Echvi_1369	0.34	-0.0
1,573,296	-		Echvi_1369	0.34	-0.7
1,573,299	-		Echvi_1369	0.35	+0.4
1,573,394	+		Echvi_1369	0.45	-1.4
1,573,407	-		Echvi_1369	0.47	-0.0
1,573,434	-		Echvi_1369	0.50	-1.3
1,573,437	-		Echvi_1369	0.50	-2.4
1,573,437	-		Echvi_1369	0.50	-0.2
1,573,437	-		Echvi_1369	0.50	-0.3
1,573,446	-		Echvi_1369	0.51	+0.3
1,573,506	-		Echvi_1369	0.58	-1.4
1,573,605	+		Echvi_1369	0.69	-2.0
1,573,617	-		Echvi_1369	0.70	+0.6
1,573,620	+		Echvi_1369	0.70	-0.2
1,573,620	+		Echvi_1369	0.70	-0.6
1,573,620	+		Echvi_1369	0.70	-0.4
1,573,621	-		Echvi_1369	0.70	-1.6
1,573,682	+		Echvi_1369	0.77	-1.3
1,573,808	+				-0.5
1,573,829	-				-2.4
1,573,829	-				+0.8
1,573,834	+				-0.8
1,573,835	-				-0.0
1,573,942	-				+0.2
1,573,953	-				-1.3
1,573,953	-				+0.4
1,573,965	+				-1.0
1,573,966	-				-0.9
1,573,966	-				+1.8
1,573,969	+				-0.4
1,573,969	+				-0.4
1,573,969	+				-0.4
1,573,969	+				+0.5
1,573,969	+				+0.3
1,573,969	+				+0.3
1,573,970	-				+2.5
1,573,970	-				+1.4
1,573,996	-				-1.0
1,574,003	+				+1.5
1,574,004	-				-0.0
1,574,008	+				-1.4
1,574,009	-				-1.8
1,574,010	+				+0.2
1,574,010	+				-0.8
1,574,010	+				-1.0
1,574,010	+				+0.2
1,574,010	+				-0.5
1,574,011	-				+0.2
1,574,011	-				+1.0
1,574,011	-				-0.4
1,574,011	-				+2.2
1,574,011	-				-1.4
1,574,048	-				-0.7
1,574,104	-				-0.2
1,574,106	+				+0.8
1,574,107	-				-0.0
1,574,107	-				-1.3
1,574,107	-				-1.5
1,574,111	+				+0.4
1,574,112	-				-0.5
1,574,113	+				-0.5
1,574,121	+				+0.4
1,574,178	+				+0.7
1,574,208	+				-0.6
1,574,223	+				-0.5
1,574,225	+				-0.1
1,574,229	+				-0.7
1,574,229	+				-1.5
1,574,229	+				-0.9
1,574,229	+				-0.7
1,574,229	+				-1.0
1,574,229	+				-1.5
1,574,229	+				-0.6
1,574,229	+				-0.9
1,574,230	-				+0.2
1,574,230	-				-1.5
1,574,230	-				+0.2
1,574,230	-				-2.8
1,574,232	+				-1.3
1,574,232	+				-2.1
1,574,232	+				-0.6
1,574,232	+				+1.1
1,574,239	+				-0.2
1,574,240	-				-0.4
1,574,281	-				+0.4
1,574,283	-				+0.5
1,574,283	-				-0.6
1,574,283	-				-0.5
1,574,340	+				-0.1
1,574,341	-				-1.1
1,574,350	+				-1.4
1,574,372	+				+1.4
1,574,436	+				+0.8
1,574,436	+				+2.5
1,574,437	-				-1.0
1,574,442	+				+0.8
1,574,454	-				+0.8
1,574,459	+				+0.0
1,574,459	+				-0.4
1,574,459	+				+0.1
1,574,460	-				+0.8
1,574,460	-				+0.6
1,574,462	+				-1.2
1,574,462	+				+1.8
1,574,463	-				+1.5
1,574,473	-				+0.9
1,574,500	-		Echvi_1370	0.10	+1.1
1,574,500	-		Echvi_1370	0.10	+0.1
1,574,501	+		Echvi_1370	0.10	-0.1
1,574,502	-		Echvi_1370	0.11	+0.7
1,574,519	+		Echvi_1370	0.11	-1.1
1,574,577	+		Echvi_1370	0.12	-0.9
1,574,577	+		Echvi_1370	0.12	-0.7
1,574,578	-		Echvi_1370	0.12	+1.8
1,574,578	-		Echvi_1370	0.12	-0.2
1,574,578	-		Echvi_1370	0.12	-0.1
1,574,578	-		Echvi_1370	0.12	-2.1
1,574,578	-		Echvi_1370	0.12	-0.2
1,574,578	-		Echvi_1370	0.12	+0.5
1,574,579	+		Echvi_1370	0.12	+0.7
1,574,579	+		Echvi_1370	0.12	-0.7
1,574,579	+		Echvi_1370	0.12	+0.3
1,574,643	+		Echvi_1370	0.13	-1.1
1,574,643	+		Echvi_1370	0.13	+0.1
1,574,667	+		Echvi_1370	0.14	-1.0
1,574,667	+		Echvi_1370	0.14	+0.3
1,574,714	-		Echvi_1370	0.15	-0.1
1,574,722	+		Echvi_1370	0.15	-3.1
1,574,830	+		Echvi_1370	0.17	+2.0
1,574,832	+		Echvi_1370	0.17	-0.8
1,574,862	-		Echvi_1370	0.17	+1.4