Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0505

Experiment: m.b. Spectinomycin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0504 and Echvi_0505 are separated by 4 nucleotidesEchvi_0505 and Echvi_0506 overlap by 10 nucleotides Echvi_0504: Echvi_0504 - Signal transduction histidine kinase, at 561,240 to 564,401 _0504 Echvi_0505: Echvi_0505 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 564,406 to 564,996 _0505 Echvi_0506: Echvi_0506 - Predicted neuraminidase (sialidase), at 564,987 to 566,087 _0506 Position (kb) 564 565Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 563.438 kb on + strand, within Echvi_0504at 563.438 kb on + strand, within Echvi_0504at 563.461 kb on + strand, within Echvi_0504at 563.461 kb on + strand, within Echvi_0504at 563.474 kb on + strand, within Echvi_0504at 563.474 kb on + strand, within Echvi_0504at 563.475 kb on - strand, within Echvi_0504at 563.475 kb on - strand, within Echvi_0504at 563.475 kb on - strand, within Echvi_0504at 563.475 kb on - strand, within Echvi_0504at 563.475 kb on - strand, within Echvi_0504at 563.514 kb on + strand, within Echvi_0504at 563.514 kb on + strand, within Echvi_0504at 563.538 kb on + strand, within Echvi_0504at 563.540 kb on + strand, within Echvi_0504at 563.540 kb on + strand, within Echvi_0504at 563.540 kb on + strand, within Echvi_0504at 563.540 kb on + strand, within Echvi_0504at 563.540 kb on + strand, within Echvi_0504at 563.541 kb on - strand, within Echvi_0504at 563.541 kb on - strand, within Echvi_0504at 563.541 kb on - strand, within Echvi_0504at 563.606 kb on + strand, within Echvi_0504at 563.606 kb on + strand, within Echvi_0504at 563.606 kb on + strand, within Echvi_0504at 563.607 kb on - strand, within Echvi_0504at 563.625 kb on + strand, within Echvi_0504at 563.688 kb on + strand, within Echvi_0504at 563.689 kb on - strand, within Echvi_0504at 563.982 kb on + strand, within Echvi_0504at 563.983 kb on - strand, within Echvi_0504at 564.014 kb on + strand, within Echvi_0504at 564.022 kb on - strand, within Echvi_0504at 564.022 kb on - strand, within Echvi_0504at 564.047 kb on - strand, within Echvi_0504at 564.085 kb on - strandat 564.086 kb on + strandat 564.181 kb on + strandat 564.181 kb on + strandat 564.181 kb on + strandat 564.182 kb on - strandat 564.182 kb on - strandat 564.182 kb on - strandat 564.355 kb on + strandat 564.355 kb on + strandat 564.356 kb on - strandat 564.356 kb on - strandat 564.386 kb on + strandat 564.399 kb on + strandat 564.400 kb on - strandat 564.400 kb on - strandat 564.400 kb on - strandat 564.425 kb on + strandat 564.426 kb on - strandat 564.434 kb on + strandat 564.435 kb on - strandat 564.473 kb on + strand, within Echvi_0505at 564.500 kb on + strand, within Echvi_0505at 564.500 kb on + strand, within Echvi_0505at 564.500 kb on + strand, within Echvi_0505at 564.501 kb on - strand, within Echvi_0505at 564.501 kb on - strand, within Echvi_0505at 564.501 kb on - strand, within Echvi_0505at 564.501 kb on - strand, within Echvi_0505at 564.501 kb on - strand, within Echvi_0505at 564.580 kb on - strand, within Echvi_0505at 564.592 kb on - strand, within Echvi_0505at 564.727 kb on + strand, within Echvi_0505at 564.825 kb on + strand, within Echvi_0505at 564.899 kb on - strand, within Echvi_0505at 564.957 kb on + strandat 564.957 kb on + strandat 564.958 kb on - strandat 564.974 kb on + strandat 564.988 kb on + strandat 564.988 kb on + strandat 564.988 kb on + strandat 564.999 kb on + strandat 564.999 kb on + strandat 564.999 kb on + strandat 565.000 kb on - strandat 565.000 kb on - strandat 565.003 kb on - strandat 565.043 kb on + strandat 565.043 kb on + strandat 565.043 kb on + strandat 565.045 kb on + strandat 565.052 kb on + strandat 565.053 kb on - strandat 565.056 kb on + strandat 565.056 kb on + strandat 565.056 kb on + strandat 565.218 kb on - strand, within Echvi_0506at 565.218 kb on - strand, within Echvi_0506at 565.219 kb on + strand, within Echvi_0506at 565.220 kb on - strand, within Echvi_0506at 565.227 kb on + strand, within Echvi_0506at 565.279 kb on - strand, within Echvi_0506at 565.310 kb on + strand, within Echvi_0506at 565.311 kb on - strand, within Echvi_0506at 565.398 kb on + strand, within Echvi_0506at 565.398 kb on + strand, within Echvi_0506at 565.399 kb on - strand, within Echvi_0506at 565.400 kb on + strand, within Echvi_0506at 565.400 kb on + strand, within Echvi_0506at 565.400 kb on + strand, within Echvi_0506at 565.400 kb on + strand, within Echvi_0506at 565.421 kb on - strand, within Echvi_0506at 565.421 kb on - strand, within Echvi_0506at 565.576 kb on - strand, within Echvi_0506at 565.576 kb on - strand, within Echvi_0506at 565.639 kb on + strand, within Echvi_0506at 565.639 kb on + strand, within Echvi_0506at 565.639 kb on + strand, within Echvi_0506at 565.640 kb on - strand, within Echvi_0506at 565.640 kb on - strand, within Echvi_0506at 565.676 kb on + strand, within Echvi_0506at 565.736 kb on - strand, within Echvi_0506at 565.752 kb on + strand, within Echvi_0506at 565.887 kb on + strand, within Echvi_0506at 565.888 kb on - strand, within Echvi_0506at 565.895 kb on + strand, within Echvi_0506at 565.896 kb on - strand, within Echvi_0506at 565.957 kb on - strand, within Echvi_0506

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.12 mg/ml
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563,438 + Echvi_0504 0.70 +0.4
563,438 + Echvi_0504 0.70 -1.9
563,461 + Echvi_0504 0.70 -1.2
563,461 + Echvi_0504 0.70 +0.2
563,474 + Echvi_0504 0.71 -1.2
563,474 + Echvi_0504 0.71 +0.3
563,475 - Echvi_0504 0.71 -0.4
563,475 - Echvi_0504 0.71 -0.4
563,475 - Echvi_0504 0.71 -1.0
563,475 - Echvi_0504 0.71 -1.2
563,475 - Echvi_0504 0.71 +0.9
563,514 + Echvi_0504 0.72 +0.5
563,514 + Echvi_0504 0.72 +0.4
563,538 + Echvi_0504 0.73 +0.1
563,540 + Echvi_0504 0.73 -0.5
563,540 + Echvi_0504 0.73 +0.2
563,540 + Echvi_0504 0.73 +0.9
563,540 + Echvi_0504 0.73 -0.3
563,540 + Echvi_0504 0.73 -1.0
563,541 - Echvi_0504 0.73 +0.6
563,541 - Echvi_0504 0.73 +1.1
563,541 - Echvi_0504 0.73 +0.1
563,606 + Echvi_0504 0.75 -1.1
563,606 + Echvi_0504 0.75 -1.5
563,606 + Echvi_0504 0.75 +1.4
563,607 - Echvi_0504 0.75 +1.4
563,625 + Echvi_0504 0.75 +1.1
563,688 + Echvi_0504 0.77 +1.5
563,689 - Echvi_0504 0.77 -1.1
563,982 + Echvi_0504 0.87 -0.6
563,983 - Echvi_0504 0.87 -0.1
564,014 + Echvi_0504 0.88 -0.4
564,022 - Echvi_0504 0.88 +0.4
564,022 - Echvi_0504 0.88 +1.0
564,047 - Echvi_0504 0.89 +0.8
564,085 - +0.6
564,086 + +0.1
564,181 + +0.8
564,181 + -1.3
564,181 + -0.3
564,182 - +0.7
564,182 - -2.1
564,182 - -0.6
564,355 + +0.4
564,355 + +0.3
564,356 - -0.9
564,356 - -1.6
564,386 + -0.1
564,399 + +1.1
564,400 - -0.3
564,400 - +0.6
564,400 - +1.0
564,425 + +0.7
564,426 - +2.8
564,434 + +0.1
564,435 - +0.1
564,473 + Echvi_0505 0.11 -0.5
564,500 + Echvi_0505 0.16 +2.3
564,500 + Echvi_0505 0.16 -1.0
564,500 + Echvi_0505 0.16 -0.7
564,501 - Echvi_0505 0.16 -1.2
564,501 - Echvi_0505 0.16 -0.3
564,501 - Echvi_0505 0.16 +0.5
564,501 - Echvi_0505 0.16 -0.3
564,501 - Echvi_0505 0.16 +0.9
564,580 - Echvi_0505 0.29 +1.0
564,592 - Echvi_0505 0.31 -1.1
564,727 + Echvi_0505 0.54 -1.5
564,825 + Echvi_0505 0.71 -2.2
564,899 - Echvi_0505 0.83 -1.5
564,957 + +1.3
564,957 + -1.9
564,958 - +0.9
564,974 + -0.5
564,988 + +0.9
564,988 + -0.1
564,988 + +1.0
564,999 + +2.6
564,999 + -0.8
564,999 + +0.5
565,000 - -0.2
565,000 - -2.3
565,003 - -0.1
565,043 + +0.7
565,043 + -0.9
565,043 + -1.5
565,045 + +0.9
565,052 + -0.8
565,053 - -0.6
565,056 + +0.5
565,056 + -0.3
565,056 + +0.6
565,218 - Echvi_0506 0.21 +0.2
565,218 - Echvi_0506 0.21 -2.1
565,219 + Echvi_0506 0.21 +0.7
565,220 - Echvi_0506 0.21 +0.5
565,227 + Echvi_0506 0.22 -3.2
565,279 - Echvi_0506 0.27 -2.0
565,310 + Echvi_0506 0.29 -1.5
565,311 - Echvi_0506 0.29 +0.7
565,398 + Echvi_0506 0.37 -0.5
565,398 + Echvi_0506 0.37 +0.1
565,399 - Echvi_0506 0.37 +0.5
565,400 + Echvi_0506 0.38 +0.2
565,400 + Echvi_0506 0.38 -1.4
565,400 + Echvi_0506 0.38 -0.5
565,400 + Echvi_0506 0.38 -0.0
565,421 - Echvi_0506 0.39 +0.5
565,421 - Echvi_0506 0.39 +1.5
565,576 - Echvi_0506 0.53 -0.8
565,576 - Echvi_0506 0.53 +0.3
565,639 + Echvi_0506 0.59 -1.1
565,639 + Echvi_0506 0.59 +0.9
565,639 + Echvi_0506 0.59 -0.4
565,640 - Echvi_0506 0.59 -1.0
565,640 - Echvi_0506 0.59 +0.1
565,676 + Echvi_0506 0.63 -1.7
565,736 - Echvi_0506 0.68 +0.7
565,752 + Echvi_0506 0.69 +0.0
565,887 + Echvi_0506 0.82 -0.9
565,888 - Echvi_0506 0.82 +1.2
565,895 + Echvi_0506 0.82 +0.8
565,896 - Echvi_0506 0.83 -0.3
565,957 - Echvi_0506 0.88 -0.3

Or see this region's nucleotide sequence