Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0501

Experiment: m.b. Spectinomycin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0500 and Echvi_0501 are separated by 72 nucleotidesEchvi_0501 and Echvi_0502 are separated by 318 nucleotides Echvi_0500: Echvi_0500 - Beta-xylosidase, at 557,142 to 558,122 _0500 Echvi_0501: Echvi_0501 - ADP-ribose pyrophosphatase, at 558,195 to 558,647 _0501 Echvi_0502: Echvi_0502 - Galactose mutarotase and related enzymes, at 558,966 to 560,126 _0502 Position (kb) 558 559Strain fitness (log2 ratio) -2 -1 0 1 2 3at 557.265 kb on + strand, within Echvi_0500at 557.313 kb on + strand, within Echvi_0500at 557.313 kb on + strand, within Echvi_0500at 557.317 kb on + strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.318 kb on - strand, within Echvi_0500at 557.340 kb on - strand, within Echvi_0500at 557.353 kb on - strand, within Echvi_0500at 557.473 kb on + strand, within Echvi_0500at 557.489 kb on + strand, within Echvi_0500at 557.489 kb on + strand, within Echvi_0500at 557.570 kb on - strand, within Echvi_0500at 557.570 kb on - strand, within Echvi_0500at 557.706 kb on - strand, within Echvi_0500at 557.706 kb on - strand, within Echvi_0500at 557.715 kb on + strand, within Echvi_0500at 557.715 kb on + strand, within Echvi_0500at 557.716 kb on - strand, within Echvi_0500at 557.716 kb on - strand, within Echvi_0500at 557.718 kb on + strand, within Echvi_0500at 557.719 kb on - strand, within Echvi_0500at 557.736 kb on - strand, within Echvi_0500at 557.738 kb on + strand, within Echvi_0500at 557.738 kb on + strand, within Echvi_0500at 557.738 kb on + strand, within Echvi_0500at 557.738 kb on + strand, within Echvi_0500at 557.739 kb on - strand, within Echvi_0500at 557.739 kb on - strand, within Echvi_0500at 557.739 kb on - strand, within Echvi_0500at 557.767 kb on - strand, within Echvi_0500at 557.781 kb on - strand, within Echvi_0500at 557.824 kb on - strand, within Echvi_0500at 557.826 kb on + strand, within Echvi_0500at 557.835 kb on + strand, within Echvi_0500at 557.835 kb on + strand, within Echvi_0500at 557.835 kb on + strand, within Echvi_0500at 557.836 kb on - strand, within Echvi_0500at 557.836 kb on - strand, within Echvi_0500at 557.843 kb on + strand, within Echvi_0500at 557.964 kb on + strand, within Echvi_0500at 557.979 kb on + strand, within Echvi_0500at 557.979 kb on + strand, within Echvi_0500at 557.980 kb on - strand, within Echvi_0500at 557.999 kb on + strand, within Echvi_0500at 558.000 kb on - strand, within Echvi_0500at 558.000 kb on - strand, within Echvi_0500at 558.054 kb on + strandat 558.057 kb on + strandat 558.058 kb on - strandat 558.072 kb on - strandat 558.104 kb on + strandat 558.120 kb on + strandat 558.131 kb on - strandat 558.209 kb on - strandat 558.214 kb on + strandat 558.214 kb on + strandat 558.214 kb on + strandat 558.293 kb on - strand, within Echvi_0501at 558.359 kb on - strand, within Echvi_0501at 558.454 kb on - strand, within Echvi_0501at 558.461 kb on - strand, within Echvi_0501at 558.551 kb on - strand, within Echvi_0501at 558.551 kb on - strand, within Echvi_0501at 558.585 kb on + strand, within Echvi_0501at 558.585 kb on + strand, within Echvi_0501at 558.586 kb on - strand, within Echvi_0501at 558.586 kb on - strand, within Echvi_0501at 558.618 kb on + strandat 558.663 kb on - strandat 558.913 kb on + strandat 558.914 kb on - strandat 558.914 kb on - strandat 558.922 kb on + strandat 558.923 kb on - strandat 558.961 kb on + strandat 558.962 kb on - strandat 558.985 kb on + strandat 558.985 kb on + strandat 559.003 kb on + strandat 559.003 kb on + strandat 559.003 kb on + strandat 559.003 kb on + strandat 559.004 kb on - strandat 559.090 kb on + strand, within Echvi_0502at 559.090 kb on + strand, within Echvi_0502at 559.093 kb on + strand, within Echvi_0502at 559.093 kb on + strand, within Echvi_0502at 559.094 kb on - strand, within Echvi_0502at 559.102 kb on + strand, within Echvi_0502at 559.102 kb on + strand, within Echvi_0502at 559.102 kb on + strand, within Echvi_0502at 559.103 kb on - strand, within Echvi_0502at 559.122 kb on - strand, within Echvi_0502at 559.127 kb on + strand, within Echvi_0502at 559.212 kb on + strand, within Echvi_0502at 559.261 kb on + strand, within Echvi_0502at 559.261 kb on + strand, within Echvi_0502at 559.265 kb on + strand, within Echvi_0502at 559.266 kb on - strand, within Echvi_0502at 559.266 kb on - strand, within Echvi_0502at 559.266 kb on - strand, within Echvi_0502at 559.266 kb on - strand, within Echvi_0502at 559.284 kb on + strand, within Echvi_0502at 559.337 kb on + strand, within Echvi_0502at 559.365 kb on - strand, within Echvi_0502at 559.393 kb on + strand, within Echvi_0502at 559.393 kb on + strand, within Echvi_0502at 559.394 kb on - strand, within Echvi_0502at 559.394 kb on - strand, within Echvi_0502at 559.394 kb on - strand, within Echvi_0502at 559.431 kb on - strand, within Echvi_0502at 559.454 kb on + strand, within Echvi_0502at 559.459 kb on + strand, within Echvi_0502at 559.479 kb on + strand, within Echvi_0502at 559.598 kb on + strand, within Echvi_0502at 559.598 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.603 kb on + strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.604 kb on - strand, within Echvi_0502at 559.607 kb on + strand, within Echvi_0502

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.12 mg/ml
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557,265 + Echvi_0500 0.13 -0.8
557,313 + Echvi_0500 0.17 -0.7
557,313 + Echvi_0500 0.17 +0.5
557,317 + Echvi_0500 0.18 +1.0
557,318 - Echvi_0500 0.18 -0.7
557,318 - Echvi_0500 0.18 -0.1
557,318 - Echvi_0500 0.18 +1.6
557,318 - Echvi_0500 0.18 +0.6
557,318 - Echvi_0500 0.18 +0.5
557,318 - Echvi_0500 0.18 +0.6
557,318 - Echvi_0500 0.18 +1.4
557,340 - Echvi_0500 0.20 -0.6
557,353 - Echvi_0500 0.22 -0.8
557,473 + Echvi_0500 0.34 +0.1
557,489 + Echvi_0500 0.35 +1.8
557,489 + Echvi_0500 0.35 +1.1
557,570 - Echvi_0500 0.44 -1.6
557,570 - Echvi_0500 0.44 +0.7
557,706 - Echvi_0500 0.57 -0.4
557,706 - Echvi_0500 0.57 +0.1
557,715 + Echvi_0500 0.58 -0.1
557,715 + Echvi_0500 0.58 +0.2
557,716 - Echvi_0500 0.59 -1.4
557,716 - Echvi_0500 0.59 +1.1
557,718 + Echvi_0500 0.59 +1.2
557,719 - Echvi_0500 0.59 +0.3
557,736 - Echvi_0500 0.61 -1.2
557,738 + Echvi_0500 0.61 -0.9
557,738 + Echvi_0500 0.61 +0.2
557,738 + Echvi_0500 0.61 +1.0
557,738 + Echvi_0500 0.61 -0.8
557,739 - Echvi_0500 0.61 -0.9
557,739 - Echvi_0500 0.61 -0.5
557,739 - Echvi_0500 0.61 -0.3
557,767 - Echvi_0500 0.64 +2.3
557,781 - Echvi_0500 0.65 -0.9
557,824 - Echvi_0500 0.70 +0.5
557,826 + Echvi_0500 0.70 -0.5
557,835 + Echvi_0500 0.71 -0.0
557,835 + Echvi_0500 0.71 -1.3
557,835 + Echvi_0500 0.71 +0.4
557,836 - Echvi_0500 0.71 -0.4
557,836 - Echvi_0500 0.71 +0.4
557,843 + Echvi_0500 0.71 +0.0
557,964 + Echvi_0500 0.84 -0.5
557,979 + Echvi_0500 0.85 -0.2
557,979 + Echvi_0500 0.85 +0.2
557,980 - Echvi_0500 0.85 +0.4
557,999 + Echvi_0500 0.87 +0.3
558,000 - Echvi_0500 0.87 +0.8
558,000 - Echvi_0500 0.87 -0.0
558,054 + +1.0
558,057 + -0.9
558,058 - +0.4
558,072 - -0.5
558,104 + -1.3
558,120 + -0.1
558,131 - +0.3
558,209 - -0.9
558,214 + -1.8
558,214 + +0.5
558,214 + +0.8
558,293 - Echvi_0501 0.22 -0.9
558,359 - Echvi_0501 0.36 -1.0
558,454 - Echvi_0501 0.57 -0.4
558,461 - Echvi_0501 0.59 +0.1
558,551 - Echvi_0501 0.79 -1.7
558,551 - Echvi_0501 0.79 -0.7
558,585 + Echvi_0501 0.86 -0.9
558,585 + Echvi_0501 0.86 -1.2
558,586 - Echvi_0501 0.86 -1.2
558,586 - Echvi_0501 0.86 -2.0
558,618 + -0.2
558,663 - -1.8
558,913 + +0.4
558,914 - +0.5
558,914 - +2.8
558,922 + -1.0
558,923 - -0.5
558,961 + +0.8
558,962 - -0.3
558,985 + -0.8
558,985 + +0.8
559,003 + +0.9
559,003 + +0.7
559,003 + +0.5
559,003 + -0.4
559,004 - +1.6
559,090 + Echvi_0502 0.11 +1.8
559,090 + Echvi_0502 0.11 -0.5
559,093 + Echvi_0502 0.11 -0.8
559,093 + Echvi_0502 0.11 -0.1
559,094 - Echvi_0502 0.11 +0.9
559,102 + Echvi_0502 0.12 -1.2
559,102 + Echvi_0502 0.12 +0.9
559,102 + Echvi_0502 0.12 -0.0
559,103 - Echvi_0502 0.12 -1.2
559,122 - Echvi_0502 0.13 -0.1
559,127 + Echvi_0502 0.14 -0.1
559,212 + Echvi_0502 0.21 -0.6
559,261 + Echvi_0502 0.25 +2.2
559,261 + Echvi_0502 0.25 -0.9
559,265 + Echvi_0502 0.26 +0.3
559,266 - Echvi_0502 0.26 +0.4
559,266 - Echvi_0502 0.26 -1.0
559,266 - Echvi_0502 0.26 +0.4
559,266 - Echvi_0502 0.26 +1.6
559,284 + Echvi_0502 0.27 +1.6
559,337 + Echvi_0502 0.32 +0.7
559,365 - Echvi_0502 0.34 +1.5
559,393 + Echvi_0502 0.37 +0.1
559,393 + Echvi_0502 0.37 -2.1
559,394 - Echvi_0502 0.37 -0.7
559,394 - Echvi_0502 0.37 +3.4
559,394 - Echvi_0502 0.37 -0.2
559,431 - Echvi_0502 0.40 +1.0
559,454 + Echvi_0502 0.42 -1.0
559,459 + Echvi_0502 0.42 -1.2
559,479 + Echvi_0502 0.44 +0.1
559,598 + Echvi_0502 0.54 +0.2
559,598 + Echvi_0502 0.54 +0.2
559,603 + Echvi_0502 0.55 -0.3
559,603 + Echvi_0502 0.55 -0.6
559,603 + Echvi_0502 0.55 +1.1
559,603 + Echvi_0502 0.55 -0.1
559,603 + Echvi_0502 0.55 -0.3
559,603 + Echvi_0502 0.55 -0.4
559,603 + Echvi_0502 0.55 +1.2
559,603 + Echvi_0502 0.55 +0.6
559,603 + Echvi_0502 0.55 +0.1
559,604 - Echvi_0502 0.55 +0.6
559,604 - Echvi_0502 0.55 +0.1
559,604 - Echvi_0502 0.55 -1.4
559,604 - Echvi_0502 0.55 +0.2
559,604 - Echvi_0502 0.55 +0.5
559,604 - Echvi_0502 0.55 -1.3
559,604 - Echvi_0502 0.55 +0.5
559,604 - Echvi_0502 0.55 +0.5
559,604 - Echvi_0502 0.55 +0.2
559,607 + Echvi_0502 0.55 -0.9

Or see this region's nucleotide sequence