Experiment: m.b. Spectinomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0468 and Echvi_0469 are separated by 117 nucleotides Echvi_0469 and Echvi_0470 are separated by 451 nucleotides
Echvi_0468: Echvi_0468 - SusD family., at 512,936 to 514,681
_0468
Echvi_0469: Echvi_0469 - TonB-linked outer membrane protein, SusC/RagA family, at 514,799 to 517,885
_0469
Echvi_0470: Echvi_0470 - beta-ketoacyl-acyl-carrier-protein synthase II, at 518,337 to 519,581
_0470
Position (kb) 514
515
516
517
518 Strain fitness (log2 ratio) -2
-1
0
1
2 at 513.910 kb on - strand, within Echvi_0468 at 513.928 kb on - strand, within Echvi_0468 at 513.941 kb on - strand, within Echvi_0468 at 513.944 kb on - strand, within Echvi_0468 at 513.944 kb on - strand, within Echvi_0468 at 513.953 kb on - strand, within Echvi_0468 at 513.953 kb on - strand, within Echvi_0468 at 513.953 kb on - strand, within Echvi_0468 at 513.963 kb on - strand, within Echvi_0468 at 513.997 kb on + strand, within Echvi_0468 at 513.997 kb on + strand, within Echvi_0468 at 514.002 kb on + strand, within Echvi_0468 at 514.002 kb on + strand, within Echvi_0468 at 514.003 kb on - strand, within Echvi_0468 at 514.016 kb on + strand, within Echvi_0468 at 514.062 kb on + strand, within Echvi_0468 at 514.062 kb on + strand, within Echvi_0468 at 514.063 kb on - strand, within Echvi_0468 at 514.066 kb on + strand, within Echvi_0468 at 514.066 kb on + strand, within Echvi_0468 at 514.067 kb on - strand, within Echvi_0468 at 514.067 kb on - strand, within Echvi_0468 at 514.067 kb on - strand, within Echvi_0468 at 514.075 kb on + strand, within Echvi_0468 at 514.096 kb on + strand, within Echvi_0468 at 514.134 kb on + strand, within Echvi_0468 at 514.134 kb on + strand, within Echvi_0468 at 514.234 kb on - strand, within Echvi_0468 at 514.360 kb on + strand, within Echvi_0468 at 514.361 kb on - strand, within Echvi_0468 at 514.361 kb on - strand, within Echvi_0468 at 514.361 kb on - strand, within Echvi_0468 at 514.361 kb on - strand, within Echvi_0468 at 514.501 kb on + strand, within Echvi_0468 at 514.501 kb on + strand, within Echvi_0468 at 514.502 kb on - strand, within Echvi_0468 at 514.511 kb on + strand at 514.511 kb on + strand at 514.511 kb on + strand at 514.511 kb on + strand at 514.512 kb on - strand at 514.512 kb on - strand at 514.512 kb on - strand at 514.512 kb on - strand at 514.515 kb on + strand at 514.616 kb on - strand at 514.621 kb on + strand at 514.672 kb on + strand at 514.673 kb on - strand at 514.814 kb on - strand at 514.840 kb on + strand at 514.924 kb on - strand at 515.016 kb on + strand at 515.026 kb on + strand at 515.047 kb on - strand at 515.080 kb on + strand at 515.080 kb on + strand at 515.081 kb on - strand at 515.176 kb on + strand, within Echvi_0469 at 515.176 kb on + strand, within Echvi_0469 at 515.176 kb on + strand, within Echvi_0469 at 515.177 kb on - strand, within Echvi_0469 at 515.177 kb on - strand, within Echvi_0469 at 515.177 kb on - strand, within Echvi_0469 at 515.187 kb on + strand, within Echvi_0469 at 515.188 kb on - strand, within Echvi_0469 at 515.188 kb on - strand, within Echvi_0469 at 515.194 kb on + strand, within Echvi_0469 at 515.241 kb on + strand, within Echvi_0469 at 515.245 kb on + strand, within Echvi_0469 at 515.254 kb on + strand, within Echvi_0469 at 515.265 kb on + strand, within Echvi_0469 at 515.265 kb on + strand, within Echvi_0469 at 515.266 kb on - strand, within Echvi_0469 at 515.266 kb on - strand, within Echvi_0469 at 515.266 kb on - strand, within Echvi_0469 at 515.266 kb on - strand, within Echvi_0469 at 515.369 kb on - strand, within Echvi_0469 at 515.369 kb on - strand, within Echvi_0469 at 515.386 kb on + strand, within Echvi_0469 at 515.388 kb on + strand, within Echvi_0469 at 515.388 kb on + strand, within Echvi_0469 at 515.389 kb on - strand, within Echvi_0469 at 515.389 kb on - strand, within Echvi_0469 at 515.418 kb on + strand, within Echvi_0469 at 515.482 kb on - strand, within Echvi_0469 at 515.496 kb on - strand, within Echvi_0469 at 515.504 kb on - strand, within Echvi_0469 at 515.536 kb on - strand, within Echvi_0469 at 515.697 kb on + strand, within Echvi_0469 at 515.698 kb on - strand, within Echvi_0469 at 515.698 kb on - strand, within Echvi_0469 at 515.860 kb on + strand, within Echvi_0469 at 515.861 kb on - strand, within Echvi_0469 at 515.975 kb on - strand, within Echvi_0469 at 516.011 kb on - strand, within Echvi_0469 at 516.011 kb on - strand, within Echvi_0469 at 516.052 kb on + strand, within Echvi_0469 at 516.053 kb on - strand, within Echvi_0469 at 516.095 kb on - strand, within Echvi_0469 at 516.108 kb on + strand, within Echvi_0469 at 516.185 kb on - strand, within Echvi_0469 at 516.203 kb on - strand, within Echvi_0469 at 516.232 kb on + strand, within Echvi_0469 at 516.319 kb on + strand, within Echvi_0469 at 516.320 kb on - strand, within Echvi_0469 at 516.327 kb on + strand, within Echvi_0469 at 516.331 kb on + strand, within Echvi_0469 at 516.332 kb on - strand, within Echvi_0469 at 516.343 kb on - strand, within Echvi_0469 at 516.343 kb on - strand, within Echvi_0469 at 516.346 kb on + strand, within Echvi_0469 at 516.346 kb on + strand, within Echvi_0469 at 516.347 kb on - strand, within Echvi_0469 at 516.367 kb on + strand, within Echvi_0469 at 516.438 kb on + strand, within Echvi_0469 at 516.438 kb on + strand, within Echvi_0469 at 516.439 kb on - strand, within Echvi_0469 at 516.447 kb on + strand, within Echvi_0469 at 516.480 kb on - strand, within Echvi_0469 at 516.480 kb on - strand, within Echvi_0469 at 516.497 kb on - strand, within Echvi_0469 at 516.498 kb on + strand, within Echvi_0469 at 516.498 kb on + strand, within Echvi_0469 at 516.499 kb on - strand, within Echvi_0469 at 516.503 kb on - strand, within Echvi_0469 at 516.533 kb on + strand, within Echvi_0469 at 516.533 kb on + strand, within Echvi_0469 at 516.534 kb on - strand, within Echvi_0469 at 516.534 kb on - strand, within Echvi_0469 at 516.534 kb on - strand, within Echvi_0469 at 516.534 kb on - strand, within Echvi_0469 at 516.611 kb on - strand, within Echvi_0469 at 516.611 kb on - strand, within Echvi_0469 at 516.637 kb on + strand, within Echvi_0469 at 516.713 kb on - strand, within Echvi_0469 at 516.730 kb on + strand, within Echvi_0469 at 516.730 kb on + strand, within Echvi_0469 at 516.733 kb on - strand, within Echvi_0469 at 516.941 kb on - strand, within Echvi_0469 at 517.017 kb on - strand, within Echvi_0469 at 517.021 kb on + strand, within Echvi_0469 at 517.081 kb on + strand, within Echvi_0469 at 517.168 kb on + strand, within Echvi_0469 at 517.198 kb on + strand, within Echvi_0469 at 517.253 kb on + strand, within Echvi_0469 at 517.253 kb on + strand, within Echvi_0469 at 517.253 kb on + strand, within Echvi_0469 at 517.254 kb on - strand, within Echvi_0469 at 517.257 kb on + strand, within Echvi_0469 at 517.257 kb on + strand, within Echvi_0469 at 517.257 kb on + strand, within Echvi_0469 at 517.257 kb on + strand, within Echvi_0469 at 517.257 kb on + strand, within Echvi_0469 at 517.257 kb on + strand, within Echvi_0469 at 517.257 kb on + strand, within Echvi_0469 at 517.258 kb on - strand, within Echvi_0469 at 517.258 kb on - strand, within Echvi_0469 at 517.258 kb on - strand, within Echvi_0469 at 517.258 kb on - strand, within Echvi_0469 at 517.259 kb on + strand, within Echvi_0469 at 517.260 kb on - strand, within Echvi_0469 at 517.342 kb on + strand, within Echvi_0469 at 517.350 kb on - strand, within Echvi_0469 at 517.370 kb on + strand, within Echvi_0469 at 517.387 kb on + strand, within Echvi_0469 at 517.387 kb on + strand, within Echvi_0469 at 517.387 kb on + strand, within Echvi_0469 at 517.405 kb on + strand, within Echvi_0469 at 517.442 kb on - strand, within Echvi_0469 at 517.520 kb on - strand, within Echvi_0469 at 517.523 kb on + strand, within Echvi_0469 at 517.523 kb on + strand, within Echvi_0469 at 517.524 kb on - strand, within Echvi_0469 at 517.625 kb on + strand at 517.708 kb on + strand at 517.708 kb on + strand at 517.709 kb on - strand at 517.753 kb on + strand at 517.754 kb on - strand at 517.852 kb on - strand at 517.852 kb on - strand at 517.885 kb on + strand at 517.944 kb on + strand at 517.945 kb on - strand at 517.945 kb on - strand at 517.961 kb on - strand at 517.967 kb on + strand at 517.967 kb on + strand at 517.968 kb on - strand at 517.969 kb on + strand at 517.969 kb on + strand at 517.969 kb on + strand at 517.969 kb on + strand at 517.969 kb on + strand at 517.969 kb on + strand at 517.970 kb on - strand at 517.985 kb on + strand at 517.986 kb on - strand at 517.991 kb on + strand at 517.991 kb on + strand at 517.992 kb on - strand at 517.992 kb on - strand at 517.996 kb on + strand at 518.004 kb on + strand at 518.004 kb on + strand at 518.005 kb on - strand at 518.011 kb on + strand at 518.012 kb on - strand at 518.041 kb on + strand at 518.059 kb on + strand at 518.101 kb on - strand at 518.162 kb on + strand at 518.192 kb on + strand at 518.193 kb on - strand at 518.215 kb on + strand at 518.215 kb on + strand at 518.215 kb on + strand at 518.216 kb on - strand at 518.281 kb on - strand at 518.326 kb on - strand at 518.326 kb on - strand at 518.326 kb on - strand at 518.339 kb on - strand at 518.348 kb on - strand at 518.372 kb on + strand at 518.373 kb on - strand at 518.373 kb on - strand at 518.412 kb on + strand at 518.459 kb on + strand at 518.460 kb on - strand at 518.480 kb on + strand, within Echvi_0470 at 518.486 kb on + strand, within Echvi_0470 at 518.487 kb on - strand, within Echvi_0470 at 518.522 kb on + strand, within Echvi_0470 at 518.525 kb on + strand, within Echvi_0470 at 518.525 kb on + strand, within Echvi_0470 at 518.604 kb on - strand, within Echvi_0470 at 518.622 kb on - strand, within Echvi_0470 at 518.669 kb on + strand, within Echvi_0470 at 518.670 kb on - strand, within Echvi_0470 at 518.678 kb on + strand, within Echvi_0470 at 518.678 kb on + strand, within Echvi_0470 at 518.685 kb on - strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.686 kb on + strand, within Echvi_0470 at 518.687 kb on - strand, within Echvi_0470 at 518.743 kb on + strand, within Echvi_0470 at 518.743 kb on + strand, within Echvi_0470 at 518.744 kb on - strand, within Echvi_0470 at 518.744 kb on - strand, within Echvi_0470 at 518.744 kb on - strand, within Echvi_0470 at 518.782 kb on + strand, within Echvi_0470 at 518.811 kb on + strand, within Echvi_0470
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.12 mg/ml remove 513,910 - Echvi_0468 0.56 +0.2 513,928 - Echvi_0468 0.57 +1.2 513,941 - Echvi_0468 0.58 -0.4 513,944 - Echvi_0468 0.58 -1.2 513,944 - Echvi_0468 0.58 -1.4 513,953 - Echvi_0468 0.58 -0.5 513,953 - Echvi_0468 0.58 +1.2 513,953 - Echvi_0468 0.58 +0.9 513,963 - Echvi_0468 0.59 -1.2 513,997 + Echvi_0468 0.61 -0.6 513,997 + Echvi_0468 0.61 +0.6 514,002 + Echvi_0468 0.61 -1.2 514,002 + Echvi_0468 0.61 +1.4 514,003 - Echvi_0468 0.61 -0.1 514,016 + Echvi_0468 0.62 -0.2 514,062 + Echvi_0468 0.64 +0.0 514,062 + Echvi_0468 0.64 +0.2 514,063 - Echvi_0468 0.65 +1.4 514,066 + Echvi_0468 0.65 +1.2 514,066 + Echvi_0468 0.65 -0.0 514,067 - Echvi_0468 0.65 -1.0 514,067 - Echvi_0468 0.65 +2.0 514,067 - Echvi_0468 0.65 -0.1 514,075 + Echvi_0468 0.65 +0.5 514,096 + Echvi_0468 0.66 -0.7 514,134 + Echvi_0468 0.69 -0.4 514,134 + Echvi_0468 0.69 +1.3 514,234 - Echvi_0468 0.74 -0.5 514,360 + Echvi_0468 0.82 -0.6 514,361 - Echvi_0468 0.82 -1.9 514,361 - Echvi_0468 0.82 -0.4 514,361 - Echvi_0468 0.82 -2.1 514,361 - Echvi_0468 0.82 -1.0 514,501 + Echvi_0468 0.90 -1.0 514,501 + Echvi_0468 0.90 +0.8 514,502 - Echvi_0468 0.90 +1.8 514,511 + +1.1 514,511 + -0.1 514,511 + +0.5 514,511 + -2.1 514,512 - +0.5 514,512 - -0.9 514,512 - -0.4 514,512 - -1.8 514,515 + -0.7 514,616 - -0.1 514,621 + +1.8 514,672 + -1.4 514,673 - -0.2 514,814 - +0.5 514,840 + -1.0 514,924 - -0.8 515,016 + +0.3 515,026 + -0.3 515,047 - -1.0 515,080 + -0.2 515,080 + -0.6 515,081 - -0.4 515,176 + Echvi_0469 0.12 -0.8 515,176 + Echvi_0469 0.12 +1.2 515,176 + Echvi_0469 0.12 -1.3 515,177 - Echvi_0469 0.12 -0.4 515,177 - Echvi_0469 0.12 +1.5 515,177 - Echvi_0469 0.12 -2.2 515,187 + Echvi_0469 0.13 -1.0 515,188 - Echvi_0469 0.13 +1.0 515,188 - Echvi_0469 0.13 -0.8 515,194 + Echvi_0469 0.13 -0.2 515,241 + Echvi_0469 0.14 +0.8 515,245 + Echvi_0469 0.14 -2.0 515,254 + Echvi_0469 0.15 +1.2 515,265 + Echvi_0469 0.15 -1.7 515,265 + Echvi_0469 0.15 +1.8 515,266 - Echvi_0469 0.15 -2.7 515,266 - Echvi_0469 0.15 -1.1 515,266 - Echvi_0469 0.15 -1.8 515,266 - Echvi_0469 0.15 -1.2 515,369 - Echvi_0469 0.18 +0.8 515,369 - Echvi_0469 0.18 +0.1 515,386 + Echvi_0469 0.19 -1.5 515,388 + Echvi_0469 0.19 +0.3 515,388 + Echvi_0469 0.19 -0.5 515,389 - Echvi_0469 0.19 +0.4 515,389 - Echvi_0469 0.19 -0.4 515,418 + Echvi_0469 0.20 -2.4 515,482 - Echvi_0469 0.22 -1.8 515,496 - Echvi_0469 0.23 -0.2 515,504 - Echvi_0469 0.23 +0.8 515,536 - Echvi_0469 0.24 -0.1 515,697 + Echvi_0469 0.29 -0.1 515,698 - Echvi_0469 0.29 -0.7 515,698 - Echvi_0469 0.29 +0.6 515,860 + Echvi_0469 0.34 +1.5 515,861 - Echvi_0469 0.34 -0.4 515,975 - Echvi_0469 0.38 +0.5 516,011 - Echvi_0469 0.39 -0.2 516,011 - Echvi_0469 0.39 +0.2 516,052 + Echvi_0469 0.41 -0.8 516,053 - Echvi_0469 0.41 -0.1 516,095 - Echvi_0469 0.42 +0.0 516,108 + Echvi_0469 0.42 +0.2 516,185 - Echvi_0469 0.45 +0.5 516,203 - Echvi_0469 0.45 -0.3 516,232 + Echvi_0469 0.46 -0.3 516,319 + Echvi_0469 0.49 +0.0 516,320 - Echvi_0469 0.49 -1.3 516,327 + Echvi_0469 0.49 -2.3 516,331 + Echvi_0469 0.50 +1.0 516,332 - Echvi_0469 0.50 -0.6 516,343 - Echvi_0469 0.50 -0.5 516,343 - Echvi_0469 0.50 -1.0 516,346 + Echvi_0469 0.50 -0.2 516,346 + Echvi_0469 0.50 -0.8 516,347 - Echvi_0469 0.50 -1.8 516,367 + Echvi_0469 0.51 -0.4 516,438 + Echvi_0469 0.53 -1.0 516,438 + Echvi_0469 0.53 +0.8 516,439 - Echvi_0469 0.53 -0.3 516,447 + Echvi_0469 0.53 -0.4 516,480 - Echvi_0469 0.54 -1.0 516,480 - Echvi_0469 0.54 +0.2 516,497 - Echvi_0469 0.55 -0.6 516,498 + Echvi_0469 0.55 -0.1 516,498 + Echvi_0469 0.55 -1.5 516,499 - Echvi_0469 0.55 +0.2 516,503 - Echvi_0469 0.55 -0.3 516,533 + Echvi_0469 0.56 -0.7 516,533 + Echvi_0469 0.56 -1.5 516,534 - Echvi_0469 0.56 -0.0 516,534 - Echvi_0469 0.56 -0.2 516,534 - Echvi_0469 0.56 -1.2 516,534 - Echvi_0469 0.56 +0.1 516,611 - Echvi_0469 0.59 -0.8 516,611 - Echvi_0469 0.59 -1.1 516,637 + Echvi_0469 0.60 +0.3 516,713 - Echvi_0469 0.62 +0.8 516,730 + Echvi_0469 0.63 -0.0 516,730 + Echvi_0469 0.63 -0.8 516,733 - Echvi_0469 0.63 -0.2 516,941 - Echvi_0469 0.69 +1.5 517,017 - Echvi_0469 0.72 -0.4 517,021 + Echvi_0469 0.72 -0.0 517,081 + Echvi_0469 0.74 -0.8 517,168 + Echvi_0469 0.77 -0.4 517,198 + Echvi_0469 0.78 -0.1 517,253 + Echvi_0469 0.79 -0.8 517,253 + Echvi_0469 0.79 -2.4 517,253 + Echvi_0469 0.79 +0.2 517,254 - Echvi_0469 0.80 -1.1 517,257 + Echvi_0469 0.80 -0.4 517,257 + Echvi_0469 0.80 -0.1 517,257 + Echvi_0469 0.80 +1.8 517,257 + Echvi_0469 0.80 +0.7 517,257 + Echvi_0469 0.80 -2.6 517,257 + Echvi_0469 0.80 -0.9 517,257 + Echvi_0469 0.80 +1.0 517,258 - Echvi_0469 0.80 -0.8 517,258 - Echvi_0469 0.80 +0.7 517,258 - Echvi_0469 0.80 +0.8 517,258 - Echvi_0469 0.80 -0.8 517,259 + Echvi_0469 0.80 +1.4 517,260 - Echvi_0469 0.80 +0.1 517,342 + Echvi_0469 0.82 -0.4 517,350 - Echvi_0469 0.83 -0.0 517,370 + Echvi_0469 0.83 -0.7 517,387 + Echvi_0469 0.84 +0.6 517,387 + Echvi_0469 0.84 +0.3 517,387 + Echvi_0469 0.84 +0.5 517,405 + Echvi_0469 0.84 -0.4 517,442 - Echvi_0469 0.86 -1.9 517,520 - Echvi_0469 0.88 -0.1 517,523 + Echvi_0469 0.88 -1.0 517,523 + Echvi_0469 0.88 -0.7 517,524 - Echvi_0469 0.88 +0.1 517,625 + +0.9 517,708 + +0.8 517,708 + +0.2 517,709 - +0.4 517,753 + +0.4 517,754 - -0.1 517,852 - -0.8 517,852 - +1.0 517,885 + +1.2 517,944 + -0.1 517,945 - -0.7 517,945 - -0.9 517,961 - +0.4 517,967 + +2.2 517,967 + +0.5 517,968 - +0.5 517,969 + -0.2 517,969 + -0.1 517,969 + +0.4 517,969 + +0.5 517,969 + +0.2 517,969 + +1.4 517,970 - -0.5 517,985 + +1.1 517,986 - -0.6 517,991 + -0.2 517,991 + -0.3 517,992 - -0.2 517,992 - +0.1 517,996 + +0.8 518,004 + +0.9 518,004 + +0.2 518,005 - +1.1 518,011 + +0.8 518,012 - -0.2 518,041 + +0.9 518,059 + -1.7 518,101 - -0.5 518,162 + +0.2 518,192 + +0.1 518,193 - +0.6 518,215 + +0.4 518,215 + -1.0 518,215 + -2.2 518,216 - +1.5 518,281 - +0.3 518,326 - -0.4 518,326 - -0.0 518,326 - -0.8 518,339 - -1.6 518,348 - +1.8 518,372 + +0.4 518,373 - -0.1 518,373 - +0.8 518,412 + -0.4 518,459 + -1.0 518,460 - +1.8 518,480 + Echvi_0470 0.11 +0.7 518,486 + Echvi_0470 0.12 -1.6 518,487 - Echvi_0470 0.12 +1.5 518,522 + Echvi_0470 0.15 +0.8 518,525 + Echvi_0470 0.15 -0.4 518,525 + Echvi_0470 0.15 -0.8 518,604 - Echvi_0470 0.21 +0.7 518,622 - Echvi_0470 0.23 +0.3 518,669 + Echvi_0470 0.27 +0.3 518,670 - Echvi_0470 0.27 +1.4 518,678 + Echvi_0470 0.27 +0.2 518,678 + Echvi_0470 0.27 +0.6 518,685 - Echvi_0470 0.28 -1.5 518,686 + Echvi_0470 0.28 -0.8 518,686 + Echvi_0470 0.28 +0.2 518,686 + Echvi_0470 0.28 +0.2 518,686 + Echvi_0470 0.28 -0.3 518,686 + Echvi_0470 0.28 -1.3 518,687 - Echvi_0470 0.28 -1.2 518,743 + Echvi_0470 0.33 -1.5 518,743 + Echvi_0470 0.33 +1.0 518,744 - Echvi_0470 0.33 +1.0 518,744 - Echvi_0470 0.33 +0.8 518,744 - Echvi_0470 0.33 +0.3 518,782 + Echvi_0470 0.36 +0.4 518,811 + Echvi_0470 0.38 -0.4
Or see this region's nucleotide sequence