Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0325

Experiment: m.b. Spectinomycin 0.12 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Spectinomycin 0.12 mg/ml
339,393	-		Echvi_0324	0.75	-0.7
339,441	+		Echvi_0324	0.79	-0.7
339,441	+		Echvi_0324	0.79	+1.2
339,519	+		Echvi_0324	0.86	-1.8
339,568	+				+0.2
339,587	+				+1.5
339,587	+				+0.1
339,620	-				+0.3
339,662	-				+0.8
339,678	+				+0.7
339,773	+				-0.5
339,773	+				-0.2
339,784	-				+0.9
339,883	-				-2.1
339,969	+				-0.6
339,969	+				+0.9
339,979	+				+0.6
339,979	+				-0.4
339,980	-				-0.4
339,980	-				+0.2
339,980	-				+0.4
339,983	+				-0.2
339,984	-				+0.8
339,984	-				-0.8
339,984	-				-0.1
339,986	+				+0.4
339,987	-				+0.4
339,987	-				+0.8
339,987	-				+0.2
340,090	+				+0.2
340,102	+				+1.4
340,102	+				-0.5
340,105	-				-0.1
340,117	+				+0.4
340,128	+				+0.8
340,129	-				+0.5
340,181	-				+2.1
340,181	-				+2.4
340,181	-				+1.2
340,185	+				-1.1
340,185	+				-0.0
340,185	+				+0.8
340,192	-				+0.4
340,192	-				-0.1
340,206	+				+1.5
340,206	+				+0.3
340,206	+				+0.1
340,206	+				-0.3
340,207	-				+1.3
340,236	-				+0.7
340,236	-				-0.5
340,236	-				+0.2
340,259	+				-0.2
340,259	+				-0.5
340,260	-				-0.3
340,264	-				-0.5
340,264	-				-0.4
340,265	+				+0.7
340,361	+				-0.1
340,361	+				+0.0
340,361	+				+0.9
340,361	+				+0.9
340,362	-				-1.0
340,362	-				+1.1
340,362	-				+0.5
340,362	-				+0.2
340,362	-				+0.2
340,365	+				-1.5
340,366	-				+0.6
340,366	-				-0.5
340,374	+				-0.7
340,375	-				+0.9
340,414	-				+0.5
340,423	-		Echvi_0325	0.13	-0.2
340,423	-		Echvi_0325	0.13	+1.8
340,497	-		Echvi_0325	0.36	+0.3
340,628	-		Echvi_0325	0.77	+1.0
340,663	+		Echvi_0325	0.88	-0.3
340,663	+		Echvi_0325	0.88	-0.6
340,664	-		Echvi_0325	0.88	-0.5
340,664	-				-0.8
340,814	+				-0.9
340,873	+				-0.5
340,873	+				+0.9
340,895	+				+0.7
340,963	-				-1.2
340,992	-				+0.6
341,064	-				+0.8
341,124	+				+0.4
341,125	-				+0.4
341,141	+				+0.0
341,144	-				-1.3
341,167	+				-0.8
341,167	+				-0.8
341,172	-				-0.5
341,198	+				-2.2
341,234	+				+0.8
341,244	-				+0.2
341,245	+				-1.8
341,245	+				+0.1
341,246	-				+0.7
341,288	-				-0.8
341,324	+				-1.1
341,324	+				-2.1
341,325	-				-1.0
341,426	-		Echvi_0326	0.10	+0.4
341,442	+		Echvi_0326	0.11	-0.1
341,443	-		Echvi_0326	0.11	+1.8
341,487	+		Echvi_0326	0.13	-1.3
341,488	-		Echvi_0326	0.13	+0.4
341,571	-		Echvi_0326	0.18	-0.9
341,572	+		Echvi_0326	0.18	+0.0
341,572	+		Echvi_0326	0.18	-0.8
341,573	-		Echvi_0326	0.18	+0.4
341,573	-		Echvi_0326	0.18	+0.2
341,573	-		Echvi_0326	0.18	-0.5
341,573	-		Echvi_0326	0.18	-0.1
341,636	+		Echvi_0326	0.22	+1.1
341,637	-		Echvi_0326	0.22	-1.1
341,637	-		Echvi_0326	0.22	-2.8
341,647	+		Echvi_0326	0.22	-1.4
341,647	+		Echvi_0326	0.22	-0.3
341,648	-		Echvi_0326	0.22	-0.4
341,648	-		Echvi_0326	0.22	-0.1
341,669	-		Echvi_0326	0.23	+1.8
341,669	-		Echvi_0326	0.23	-0.1
341,669	-		Echvi_0326	0.23	-2.7
341,669	-		Echvi_0326	0.23	+0.3
341,672	-		Echvi_0326	0.24	+1.0