Experiment: m.b. Spectinomycin 0.12 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0178 and Echvi_0179 are separated by 465 nucleotides Echvi_0179 and Echvi_0180 are separated by 50 nucleotides Echvi_0180 and Echvi_0181 are separated by 154 nucleotides
Echvi_0178: Echvi_0178 - Bacteroidetes-specific putative membrane protein, at 195,851 to 196,819
_0178
Echvi_0179: Echvi_0179 - Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases, at 197,285 to 197,680
_0179
Echvi_0180: Echvi_0180 - transcription elongation factor GreA, at 197,731 to 198,204
_0180
Echvi_0181: Echvi_0181 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 198,359 to 199,294
_0181
Position (kb) 197
198 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 196.327 kb on + strand, within Echvi_0178 at 196.327 kb on + strand, within Echvi_0178 at 196.331 kb on - strand, within Echvi_0178 at 196.343 kb on + strand, within Echvi_0178 at 196.349 kb on + strand, within Echvi_0178 at 196.349 kb on + strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.350 kb on - strand, within Echvi_0178 at 196.354 kb on + strand, within Echvi_0178 at 196.364 kb on + strand, within Echvi_0178 at 196.406 kb on + strand, within Echvi_0178 at 196.420 kb on + strand, within Echvi_0178 at 196.426 kb on - strand, within Echvi_0178 at 196.437 kb on + strand, within Echvi_0178 at 196.506 kb on + strand, within Echvi_0178 at 196.506 kb on + strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.507 kb on - strand, within Echvi_0178 at 196.579 kb on + strand, within Echvi_0178 at 196.656 kb on + strand, within Echvi_0178 at 196.657 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.672 kb on - strand, within Echvi_0178 at 196.687 kb on - strand, within Echvi_0178 at 196.687 kb on - strand, within Echvi_0178 at 196.708 kb on + strand, within Echvi_0178 at 196.709 kb on - strand, within Echvi_0178 at 196.709 kb on - strand, within Echvi_0178 at 196.724 kb on + strand at 196.726 kb on + strand at 196.726 kb on + strand at 196.727 kb on - strand at 196.728 kb on + strand at 196.728 kb on + strand at 196.729 kb on - strand at 196.766 kb on + strand at 196.853 kb on + strand at 197.003 kb on + strand at 197.003 kb on + strand at 197.011 kb on + strand at 197.011 kb on + strand at 197.274 kb on - strand at 197.296 kb on + strand at 197.296 kb on + strand at 197.297 kb on - strand at 197.315 kb on + strand at 197.315 kb on + strand at 197.316 kb on - strand at 197.344 kb on + strand, within Echvi_0179 at 197.350 kb on + strand, within Echvi_0179 at 197.351 kb on - strand, within Echvi_0179 at 197.426 kb on + strand, within Echvi_0179 at 197.449 kb on + strand, within Echvi_0179 at 197.450 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.539 kb on - strand, within Echvi_0179 at 197.543 kb on + strand, within Echvi_0179 at 197.544 kb on - strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.554 kb on + strand, within Echvi_0179 at 197.555 kb on - strand, within Echvi_0179 at 197.558 kb on + strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.633 kb on - strand, within Echvi_0179 at 197.711 kb on - strand at 197.732 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.739 kb on + strand at 197.782 kb on + strand, within Echvi_0180 at 197.890 kb on - strand, within Echvi_0180 at 197.914 kb on - strand at 198.060 kb on - strand, within Echvi_0180 at 198.183 kb on + strand at 198.185 kb on + strand at 198.188 kb on + strand at 198.188 kb on + strand at 198.189 kb on - strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.280 kb on + strand at 198.290 kb on - strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.308 kb on + strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.309 kb on - strand at 198.310 kb on + strand at 198.310 kb on + strand at 198.310 kb on + strand at 198.311 kb on - strand at 198.330 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.12 mg/ml remove 196,327 + Echvi_0178 0.49 -0.1 196,327 + Echvi_0178 0.49 +0.2 196,331 - Echvi_0178 0.50 -1.8 196,343 + Echvi_0178 0.51 +1.9 196,349 + Echvi_0178 0.51 -2.2 196,349 + Echvi_0178 0.51 -0.1 196,350 - Echvi_0178 0.51 +0.2 196,350 - Echvi_0178 0.51 -0.5 196,350 - Echvi_0178 0.51 +0.3 196,354 + Echvi_0178 0.52 -1.3 196,364 + Echvi_0178 0.53 -0.2 196,406 + Echvi_0178 0.57 +1.2 196,420 + Echvi_0178 0.59 +0.3 196,426 - Echvi_0178 0.59 +1.5 196,437 + Echvi_0178 0.60 -0.8 196,506 + Echvi_0178 0.68 +0.3 196,506 + Echvi_0178 0.68 -0.6 196,507 - Echvi_0178 0.68 +0.2 196,507 - Echvi_0178 0.68 +0.5 196,507 - Echvi_0178 0.68 -0.1 196,579 + Echvi_0178 0.75 +0.2 196,656 + Echvi_0178 0.83 +1.3 196,657 - Echvi_0178 0.83 +0.4 196,672 - Echvi_0178 0.85 +0.8 196,672 - Echvi_0178 0.85 -0.6 196,672 - Echvi_0178 0.85 -0.1 196,687 - Echvi_0178 0.86 -0.1 196,687 - Echvi_0178 0.86 +0.0 196,708 + Echvi_0178 0.88 -0.2 196,709 - Echvi_0178 0.89 -0.2 196,709 - Echvi_0178 0.89 -0.9 196,724 + -1.4 196,726 + +0.8 196,726 + +0.7 196,727 - -1.2 196,728 + +0.2 196,728 + -1.5 196,729 - -3.0 196,766 + +1.6 196,853 + -1.8 197,003 + -1.1 197,003 + -0.4 197,011 + -0.7 197,011 + -1.2 197,274 - +0.6 197,296 + +0.2 197,296 + +0.5 197,297 - +0.2 197,315 + +1.6 197,315 + +0.3 197,316 - +1.8 197,344 + Echvi_0179 0.15 -0.1 197,350 + Echvi_0179 0.16 -0.3 197,351 - Echvi_0179 0.17 -1.1 197,426 + Echvi_0179 0.36 +1.2 197,449 + Echvi_0179 0.41 +0.2 197,450 - Echvi_0179 0.42 -0.7 197,539 - Echvi_0179 0.64 -0.1 197,539 - Echvi_0179 0.64 +0.0 197,543 + Echvi_0179 0.65 -0.6 197,544 - Echvi_0179 0.65 -0.6 197,554 + Echvi_0179 0.68 -1.7 197,554 + Echvi_0179 0.68 -0.2 197,555 - Echvi_0179 0.68 -0.6 197,558 + Echvi_0179 0.69 +0.3 197,633 - Echvi_0179 0.88 -1.2 197,633 - Echvi_0179 0.88 -1.0 197,711 - +2.0 197,732 + +0.3 197,739 + -1.8 197,739 + -1.2 197,739 + -0.8 197,782 + Echvi_0180 0.11 -0.8 197,890 - Echvi_0180 0.34 +0.0 197,914 - +3.1 198,060 - Echvi_0180 0.69 +2.3 198,183 + +2.3 198,185 + +1.5 198,188 + -0.5 198,188 + -0.3 198,189 - -0.2 198,280 + -2.0 198,280 + -0.6 198,280 + +0.3 198,280 + +1.4 198,290 - -0.1 198,308 + +0.0 198,308 + -0.4 198,308 + +0.6 198,308 + -1.1 198,309 - -2.1 198,309 - -1.7 198,309 - +0.8 198,309 - +0.4 198,309 - -0.1 198,310 + -0.6 198,310 + +1.6 198,310 + +0.3 198,311 - -0.2 198,330 + -0.5
Or see this region's nucleotide sequence