Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0057

Experiment: m.b. Spectinomycin 0.12 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0055 and Echvi_0056 are separated by 3 nucleotidesEchvi_0056 and Echvi_0057 are separated by 86 nucleotidesEchvi_0057 and Echvi_0058 are separated by 53 nucleotides Echvi_0055: Echvi_0055 - Predicted Zn-dependent peptidases, at 51,567 to 52,796 _0055 Echvi_0056: Echvi_0056 - Predicted O-methyltransferase, at 52,800 to 53,444 _0056 Echvi_0057: Echvi_0057 - FOG: LysM repeat, at 53,531 to 55,102 _0057 Echvi_0058: Echvi_0058 - Protein of unknown function (DUF3078)., at 55,156 to 56,148 _0058 Position (kb) 53 54 55 56Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 52.575 kb on - strand, within Echvi_0055at 52.642 kb on + strand, within Echvi_0055at 52.739 kb on - strandat 52.770 kb on - strandat 52.807 kb on + strandat 52.823 kb on - strandat 52.823 kb on - strandat 52.823 kb on - strandat 52.825 kb on + strandat 52.825 kb on + strandat 52.826 kb on - strandat 52.826 kb on - strandat 52.831 kb on - strandat 52.831 kb on - strandat 52.831 kb on - strandat 52.901 kb on - strand, within Echvi_0056at 52.990 kb on + strand, within Echvi_0056at 52.998 kb on + strand, within Echvi_0056at 52.999 kb on - strand, within Echvi_0056at 53.008 kb on - strand, within Echvi_0056at 53.021 kb on + strand, within Echvi_0056at 53.057 kb on + strand, within Echvi_0056at 53.136 kb on + strand, within Echvi_0056at 53.136 kb on + strand, within Echvi_0056at 53.136 kb on + strand, within Echvi_0056at 53.136 kb on + strand, within Echvi_0056at 53.137 kb on - strand, within Echvi_0056at 53.137 kb on - strand, within Echvi_0056at 53.137 kb on - strand, within Echvi_0056at 53.137 kb on - strand, within Echvi_0056at 53.139 kb on - strand, within Echvi_0056at 53.287 kb on + strand, within Echvi_0056at 53.287 kb on + strand, within Echvi_0056at 53.287 kb on + strand, within Echvi_0056at 53.287 kb on + strand, within Echvi_0056at 53.288 kb on - strand, within Echvi_0056at 53.401 kb on + strandat 53.401 kb on + strandat 53.469 kb on - strandat 53.558 kb on + strandat 53.558 kb on + strandat 53.558 kb on + strandat 53.558 kb on + strandat 53.559 kb on - strandat 53.560 kb on + strandat 53.560 kb on + strandat 53.723 kb on + strand, within Echvi_0057at 53.723 kb on + strand, within Echvi_0057at 53.756 kb on + strand, within Echvi_0057at 53.756 kb on + strand, within Echvi_0057at 53.756 kb on + strand, within Echvi_0057at 53.757 kb on - strand, within Echvi_0057at 53.757 kb on - strand, within Echvi_0057at 53.759 kb on - strand, within Echvi_0057at 53.759 kb on - strand, within Echvi_0057at 53.809 kb on + strand, within Echvi_0057at 53.809 kb on + strand, within Echvi_0057at 53.809 kb on + strand, within Echvi_0057at 53.810 kb on - strand, within Echvi_0057at 53.810 kb on - strand, within Echvi_0057at 53.810 kb on - strand, within Echvi_0057at 53.979 kb on + strand, within Echvi_0057at 53.979 kb on + strand, within Echvi_0057at 53.979 kb on + strand, within Echvi_0057at 53.982 kb on - strand, within Echvi_0057at 53.982 kb on - strand, within Echvi_0057at 54.081 kb on - strand, within Echvi_0057at 54.107 kb on - strand, within Echvi_0057at 54.125 kb on + strand, within Echvi_0057at 54.126 kb on - strand, within Echvi_0057at 54.126 kb on - strand, within Echvi_0057at 54.274 kb on - strand, within Echvi_0057at 54.327 kb on - strand, within Echvi_0057at 54.327 kb on - strand, within Echvi_0057at 54.338 kb on + strand, within Echvi_0057at 54.388 kb on + strand, within Echvi_0057at 54.388 kb on + strand, within Echvi_0057at 54.403 kb on - strand, within Echvi_0057at 54.556 kb on + strand, within Echvi_0057at 54.556 kb on + strand, within Echvi_0057at 54.597 kb on + strand, within Echvi_0057at 54.630 kb on - strand, within Echvi_0057at 54.632 kb on + strand, within Echvi_0057at 54.632 kb on + strand, within Echvi_0057at 54.632 kb on + strand, within Echvi_0057at 54.632 kb on + strand, within Echvi_0057at 54.633 kb on - strand, within Echvi_0057at 54.633 kb on - strand, within Echvi_0057at 54.633 kb on - strand, within Echvi_0057at 54.636 kb on - strand, within Echvi_0057at 54.671 kb on + strand, within Echvi_0057at 54.719 kb on + strand, within Echvi_0057at 54.720 kb on - strand, within Echvi_0057at 54.760 kb on - strand, within Echvi_0057at 54.761 kb on + strand, within Echvi_0057at 54.762 kb on - strand, within Echvi_0057at 54.809 kb on + strand, within Echvi_0057at 54.810 kb on - strand, within Echvi_0057at 54.810 kb on - strand, within Echvi_0057at 54.814 kb on + strand, within Echvi_0057at 54.814 kb on + strand, within Echvi_0057at 54.846 kb on + strand, within Echvi_0057at 54.846 kb on + strand, within Echvi_0057at 54.846 kb on + strand, within Echvi_0057at 54.865 kb on + strand, within Echvi_0057at 54.964 kb on + strandat 54.964 kb on + strandat 54.964 kb on + strandat 54.964 kb on + strandat 54.965 kb on - strandat 54.965 kb on - strandat 54.965 kb on - strandat 54.989 kb on + strandat 55.084 kb on - strandat 55.084 kb on - strandat 55.118 kb on + strandat 55.119 kb on - strandat 55.119 kb on - strandat 55.123 kb on + strandat 55.123 kb on + strandat 55.136 kb on + strandat 55.136 kb on + strandat 55.136 kb on + strandat 55.170 kb on + strandat 55.170 kb on + strandat 55.187 kb on + strandat 55.257 kb on + strand, within Echvi_0058at 55.269 kb on + strand, within Echvi_0058at 55.270 kb on - strand, within Echvi_0058at 55.300 kb on - strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.313 kb on + strand, within Echvi_0058at 55.314 kb on - strand, within Echvi_0058at 55.321 kb on - strand, within Echvi_0058at 55.345 kb on + strand, within Echvi_0058at 55.368 kb on - strand, within Echvi_0058at 55.431 kb on - strand, within Echvi_0058at 55.442 kb on - strand, within Echvi_0058at 55.517 kb on - strand, within Echvi_0058at 55.517 kb on - strand, within Echvi_0058at 55.517 kb on - strand, within Echvi_0058at 55.589 kb on - strand, within Echvi_0058at 55.635 kb on + strand, within Echvi_0058at 55.636 kb on - strand, within Echvi_0058at 55.640 kb on - strand, within Echvi_0058at 55.732 kb on + strand, within Echvi_0058at 55.755 kb on + strand, within Echvi_0058at 55.767 kb on + strand, within Echvi_0058at 55.772 kb on + strand, within Echvi_0058at 55.860 kb on - strand, within Echvi_0058at 55.887 kb on + strand, within Echvi_0058at 55.887 kb on + strand, within Echvi_0058at 55.991 kb on - strand, within Echvi_0058at 56.013 kb on + strand, within Echvi_0058at 56.017 kb on + strand, within Echvi_0058at 56.017 kb on + strand, within Echvi_0058at 56.017 kb on + strand, within Echvi_0058at 56.017 kb on + strand, within Echvi_0058at 56.018 kb on - strand, within Echvi_0058at 56.018 kb on - strand, within Echvi_0058at 56.028 kb on + strand, within Echvi_0058at 56.102 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.12 mg/ml
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52,575 - Echvi_0055 0.82 +1.2
52,642 + Echvi_0055 0.87 +0.2
52,739 - -3.4
52,770 - -0.7
52,807 + +0.6
52,823 - +0.1
52,823 - -0.3
52,823 - +0.6
52,825 + +1.4
52,825 + -0.1
52,826 - -1.8
52,826 - +0.5
52,831 - -0.5
52,831 - -0.1
52,831 - -0.1
52,901 - Echvi_0056 0.16 +0.4
52,990 + Echvi_0056 0.29 +0.5
52,998 + Echvi_0056 0.31 +0.2
52,999 - Echvi_0056 0.31 -0.9
53,008 - Echvi_0056 0.32 -0.2
53,021 + Echvi_0056 0.34 +1.3
53,057 + Echvi_0056 0.40 -3.5
53,136 + Echvi_0056 0.52 +0.4
53,136 + Echvi_0056 0.52 +0.4
53,136 + Echvi_0056 0.52 +0.2
53,136 + Echvi_0056 0.52 -0.8
53,137 - Echvi_0056 0.52 +0.1
53,137 - Echvi_0056 0.52 -0.8
53,137 - Echvi_0056 0.52 -0.2
53,137 - Echvi_0056 0.52 +0.3
53,139 - Echvi_0056 0.53 -0.8
53,287 + Echvi_0056 0.76 -1.2
53,287 + Echvi_0056 0.76 -0.6
53,287 + Echvi_0056 0.76 +0.3
53,287 + Echvi_0056 0.76 +1.1
53,288 - Echvi_0056 0.76 +1.8
53,401 + -0.4
53,401 + -0.4
53,469 - -0.8
53,558 + +1.0
53,558 + -1.2
53,558 + +0.7
53,558 + +0.8
53,559 - -0.8
53,560 + +0.2
53,560 + +0.0
53,723 + Echvi_0057 0.12 -1.4
53,723 + Echvi_0057 0.12 +0.2
53,756 + Echvi_0057 0.14 -0.2
53,756 + Echvi_0057 0.14 -1.5
53,756 + Echvi_0057 0.14 -0.2
53,757 - Echvi_0057 0.14 +0.2
53,757 - Echvi_0057 0.14 +0.3
53,759 - Echvi_0057 0.15 -0.2
53,759 - Echvi_0057 0.15 -2.6
53,809 + Echvi_0057 0.18 +0.5
53,809 + Echvi_0057 0.18 +0.0
53,809 + Echvi_0057 0.18 +1.8
53,810 - Echvi_0057 0.18 -1.1
53,810 - Echvi_0057 0.18 -0.2
53,810 - Echvi_0057 0.18 +0.5
53,979 + Echvi_0057 0.28 +0.2
53,979 + Echvi_0057 0.28 +0.9
53,979 + Echvi_0057 0.28 +1.0
53,982 - Echvi_0057 0.29 +0.2
53,982 - Echvi_0057 0.29 -0.3
54,081 - Echvi_0057 0.35 +0.3
54,107 - Echvi_0057 0.37 -0.6
54,125 + Echvi_0057 0.38 +0.8
54,126 - Echvi_0057 0.38 +0.4
54,126 - Echvi_0057 0.38 -1.6
54,274 - Echvi_0057 0.47 -1.6
54,327 - Echvi_0057 0.51 -0.2
54,327 - Echvi_0057 0.51 +0.5
54,338 + Echvi_0057 0.51 +0.3
54,388 + Echvi_0057 0.55 +1.2
54,388 + Echvi_0057 0.55 +1.3
54,403 - Echvi_0057 0.55 +1.8
54,556 + Echvi_0057 0.65 +0.1
54,556 + Echvi_0057 0.65 +1.4
54,597 + Echvi_0057 0.68 -2.0
54,630 - Echvi_0057 0.70 -0.8
54,632 + Echvi_0057 0.70 -2.4
54,632 + Echvi_0057 0.70 -1.4
54,632 + Echvi_0057 0.70 -1.1
54,632 + Echvi_0057 0.70 -0.8
54,633 - Echvi_0057 0.70 +2.2
54,633 - Echvi_0057 0.70 +0.7
54,633 - Echvi_0057 0.70 +0.8
54,636 - Echvi_0057 0.70 +0.8
54,671 + Echvi_0057 0.73 +0.4
54,719 + Echvi_0057 0.76 -1.0
54,720 - Echvi_0057 0.76 +0.6
54,760 - Echvi_0057 0.78 +0.8
54,761 + Echvi_0057 0.78 +0.5
54,762 - Echvi_0057 0.78 +0.2
54,809 + Echvi_0057 0.81 +0.8
54,810 - Echvi_0057 0.81 -0.3
54,810 - Echvi_0057 0.81 +0.6
54,814 + Echvi_0057 0.82 -0.1
54,814 + Echvi_0057 0.82 +0.4
54,846 + Echvi_0057 0.84 +0.8
54,846 + Echvi_0057 0.84 -0.6
54,846 + Echvi_0057 0.84 +1.6
54,865 + Echvi_0057 0.85 -0.6
54,964 + -0.1
54,964 + -0.5
54,964 + +0.3
54,964 + +1.5
54,965 - -0.9
54,965 - -0.4
54,965 - +0.2
54,989 + -0.5
55,084 - +0.6
55,084 - +0.3
55,118 + -0.3
55,119 - +0.9
55,119 - +0.5
55,123 + -1.8
55,123 + -0.9
55,136 + -0.7
55,136 + +3.2
55,136 + +1.2
55,170 + -0.2
55,170 + +1.3
55,187 + +1.2
55,257 + Echvi_0058 0.10 +0.7
55,269 + Echvi_0058 0.11 -0.6
55,270 - Echvi_0058 0.11 +0.2
55,300 - Echvi_0058 0.15 +1.5
55,313 + Echvi_0058 0.16 +0.2
55,313 + Echvi_0058 0.16 -0.2
55,313 + Echvi_0058 0.16 -1.5
55,313 + Echvi_0058 0.16 -0.1
55,313 + Echvi_0058 0.16 +0.1
55,314 - Echvi_0058 0.16 -0.4
55,321 - Echvi_0058 0.17 +0.9
55,345 + Echvi_0058 0.19 -0.2
55,368 - Echvi_0058 0.21 +0.4
55,431 - Echvi_0058 0.28 +0.3
55,442 - Echvi_0058 0.29 +0.2
55,517 - Echvi_0058 0.36 +0.1
55,517 - Echvi_0058 0.36 +0.3
55,517 - Echvi_0058 0.36 -1.2
55,589 - Echvi_0058 0.44 +0.8
55,635 + Echvi_0058 0.48 -0.3
55,636 - Echvi_0058 0.48 -1.3
55,640 - Echvi_0058 0.49 -2.7
55,732 + Echvi_0058 0.58 +0.9
55,755 + Echvi_0058 0.60 +0.2
55,767 + Echvi_0058 0.62 +0.3
55,772 + Echvi_0058 0.62 +1.3
55,860 - Echvi_0058 0.71 -0.6
55,887 + Echvi_0058 0.74 +0.2
55,887 + Echvi_0058 0.74 +0.8
55,991 - Echvi_0058 0.84 -1.1
56,013 + Echvi_0058 0.86 +1.0
56,017 + Echvi_0058 0.87 -0.5
56,017 + Echvi_0058 0.87 +2.1
56,017 + Echvi_0058 0.87 -0.4
56,017 + Echvi_0058 0.87 +0.0
56,018 - Echvi_0058 0.87 +0.5
56,018 - Echvi_0058 0.87 +0.0
56,028 + Echvi_0058 0.88 +0.2
56,102 + +0.1

Or see this region's nucleotide sequence