Experiment: alpha-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3347 and Atu3348 are separated by 23 nucleotides Atu3348 and Atu3349 are separated by 56 nucleotides Atu3349 and Atu3350 are separated by 5 nucleotides Atu3350 and Atu3351 overlap by 8 nucleotides
Atu3347: Atu3347 - hypothetical protein, at 380,545 to 381,678
Atu3347
Atu3348: Atu3348 - hypothetical protein, at 381,702 to 382,466
Atu3348
Atu3349: Atu3349 - ABC transporter permease, at 382,523 to 383,611
Atu3349
Atu3350: Atu3350 - ABC transporter permease, at 383,617 to 384,558
Atu3350
Atu3351: Atu3351 - sugar ABC transporter permease, at 384,551 to 385,453
Atu3351
Position (kb) 382
383
384 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 381.583 kb on - strand at 381.604 kb on - strand at 381.604 kb on - strand at 381.666 kb on + strand at 381.765 kb on - strand at 381.848 kb on + strand, within Atu3348 at 381.910 kb on + strand, within Atu3348 at 382.041 kb on - strand, within Atu3348 at 382.086 kb on + strand, within Atu3348 at 382.148 kb on + strand, within Atu3348 at 382.151 kb on - strand, within Atu3348 at 382.191 kb on - strand, within Atu3348 at 382.287 kb on + strand, within Atu3348 at 382.292 kb on + strand, within Atu3348 at 382.347 kb on + strand, within Atu3348 at 382.366 kb on + strand, within Atu3348 at 382.374 kb on - strand, within Atu3348 at 382.438 kb on + strand at 382.438 kb on + strand at 382.529 kb on - strand at 382.565 kb on + strand at 382.568 kb on - strand at 382.570 kb on + strand at 382.588 kb on + strand at 382.596 kb on - strand at 382.596 kb on - strand at 382.596 kb on - strand at 382.640 kb on + strand, within Atu3349 at 382.659 kb on - strand, within Atu3349 at 382.714 kb on + strand, within Atu3349 at 382.714 kb on - strand, within Atu3349 at 382.714 kb on - strand, within Atu3349 at 382.726 kb on + strand, within Atu3349 at 382.727 kb on - strand, within Atu3349 at 382.905 kb on - strand, within Atu3349 at 383.040 kb on + strand, within Atu3349 at 383.149 kb on + strand, within Atu3349 at 383.149 kb on + strand, within Atu3349 at 383.281 kb on - strand, within Atu3349 at 383.341 kb on + strand, within Atu3349 at 383.355 kb on + strand, within Atu3349 at 383.466 kb on + strand, within Atu3349 at 383.484 kb on - strand, within Atu3349 at 383.572 kb on + strand at 383.688 kb on + strand at 383.745 kb on + strand, within Atu3350 at 383.800 kb on + strand, within Atu3350 at 383.808 kb on - strand, within Atu3350 at 383.852 kb on - strand, within Atu3350 at 383.882 kb on - strand, within Atu3350 at 383.932 kb on - strand, within Atu3350 at 383.947 kb on - strand, within Atu3350 at 384.109 kb on - strand, within Atu3350 at 384.126 kb on - strand, within Atu3350 at 384.138 kb on + strand, within Atu3350 at 384.146 kb on - strand, within Atu3350 at 384.158 kb on + strand, within Atu3350 at 384.265 kb on + strand, within Atu3350 at 384.265 kb on + strand, within Atu3350 at 384.273 kb on - strand, within Atu3350 at 384.273 kb on - strand, within Atu3350 at 384.287 kb on + strand, within Atu3350 at 384.294 kb on + strand, within Atu3350 at 384.294 kb on + strand, within Atu3350 at 384.300 kb on - strand, within Atu3350 at 384.302 kb on - strand, within Atu3350 at 384.302 kb on - strand, within Atu3350 at 384.306 kb on + strand, within Atu3350 at 384.314 kb on - strand, within Atu3350 at 384.419 kb on + strand, within Atu3350 at 384.427 kb on - strand, within Atu3350
Per-strain Table
Position Strand Gene LocusTag Fraction alpha-Lactose (C) remove 381,583 - -3.1 381,604 - -1.8 381,604 - -2.2 381,666 + -1.9 381,765 - -1.2 381,848 + Atu3348 0.19 -1.6 381,910 + Atu3348 0.27 -2.9 382,041 - Atu3348 0.44 -2.1 382,086 + Atu3348 0.50 -2.2 382,148 + Atu3348 0.58 -1.7 382,151 - Atu3348 0.59 -2.4 382,191 - Atu3348 0.64 -2.1 382,287 + Atu3348 0.76 -1.8 382,292 + Atu3348 0.77 -2.3 382,347 + Atu3348 0.84 -1.6 382,366 + Atu3348 0.87 -1.8 382,374 - Atu3348 0.88 -2.7 382,438 + -2.4 382,438 + -1.8 382,529 - -0.5 382,565 + -0.9 382,568 - +0.9 382,570 + -1.0 382,588 + -0.8 382,596 - +0.3 382,596 - -0.3 382,596 - -0.1 382,640 + Atu3349 0.11 +0.4 382,659 - Atu3349 0.12 +1.5 382,714 + Atu3349 0.18 -1.2 382,714 - Atu3349 0.18 +0.4 382,714 - Atu3349 0.18 +0.9 382,726 + Atu3349 0.19 -0.9 382,727 - Atu3349 0.19 +0.7 382,905 - Atu3349 0.35 -0.4 383,040 + Atu3349 0.47 -1.1 383,149 + Atu3349 0.57 -1.8 383,149 + Atu3349 0.57 -2.0 383,281 - Atu3349 0.70 -2.0 383,341 + Atu3349 0.75 -0.7 383,355 + Atu3349 0.76 -0.7 383,466 + Atu3349 0.87 -4.3 383,484 - Atu3349 0.88 -1.7 383,572 + -0.8 383,688 + +0.2 383,745 + Atu3350 0.14 -0.1 383,800 + Atu3350 0.19 -0.2 383,808 - Atu3350 0.20 +1.0 383,852 - Atu3350 0.25 +0.1 383,882 - Atu3350 0.28 +0.5 383,932 - Atu3350 0.33 -2.9 383,947 - Atu3350 0.35 +0.6 384,109 - Atu3350 0.52 +0.7 384,126 - Atu3350 0.54 -1.2 384,138 + Atu3350 0.55 -1.6 384,146 - Atu3350 0.56 -1.8 384,158 + Atu3350 0.57 -0.1 384,265 + Atu3350 0.69 -1.7 384,265 + Atu3350 0.69 -2.0 384,273 - Atu3350 0.70 -1.0 384,273 - Atu3350 0.70 -0.1 384,287 + Atu3350 0.71 -1.2 384,294 + Atu3350 0.72 +0.0 384,294 + Atu3350 0.72 -1.0 384,300 - Atu3350 0.73 -1.1 384,302 - Atu3350 0.73 -0.4 384,302 - Atu3350 0.73 -1.7 384,306 + Atu3350 0.73 -1.5 384,314 - Atu3350 0.74 -2.2 384,419 + Atu3350 0.85 -1.4 384,427 - Atu3350 0.86 +2.5
Or see this region's nucleotide sequence