Experiment: alpha-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3339 and Atu3340 overlap by 4 nucleotides Atu3340 and Atu3341 are separated by 10 nucleotides Atu3341 and Atu3342 are separated by 57 nucleotides Atu3342 and Atu3343 are separated by 6 nucleotides
Atu3339: Atu3339 - trehalose/maltose ABC transporter permease, at 373,807 to 374,781
Atu3339
Atu3340: Atu3340 - trehalose/maltose ABC transporter permease, at 374,778 to 375,611
Atu3340
Atu3341: Atu3341 - trehalose/maltose ABC transporter ATPase, at 375,622 to 376,650
Atu3341
Atu3342: Atu3342 - trehalose utilization-like protein, at 376,708 to 377,493
Atu3342
Atu3343: Atu3343 - trehalose utilization-like protein, at 377,500 to 378,549
Atu3343
Position (kb) 375
376
377 Strain fitness (log2 ratio) -1
0
1 at 374.622 kb on + strand, within Atu3339 at 374.622 kb on + strand, within Atu3339 at 374.630 kb on - strand, within Atu3339 at 374.630 kb on - strand, within Atu3339 at 374.774 kb on + strand at 374.818 kb on + strand at 374.868 kb on + strand, within Atu3340 at 374.868 kb on + strand, within Atu3340 at 375.057 kb on - strand, within Atu3340 at 375.103 kb on - strand, within Atu3340 at 375.232 kb on - strand, within Atu3340 at 375.301 kb on + strand, within Atu3340 at 375.309 kb on - strand, within Atu3340 at 375.316 kb on - strand, within Atu3340 at 375.347 kb on - strand, within Atu3340 at 375.364 kb on + strand, within Atu3340 at 375.364 kb on + strand, within Atu3340 at 375.372 kb on - strand, within Atu3340 at 375.372 kb on - strand, within Atu3340 at 375.426 kb on - strand, within Atu3340 at 375.577 kb on + strand at 375.577 kb on + strand at 375.626 kb on + strand at 375.665 kb on + strand at 375.665 kb on + strand at 375.756 kb on + strand, within Atu3341 at 375.885 kb on + strand, within Atu3341 at 375.981 kb on - strand, within Atu3341 at 375.987 kb on + strand, within Atu3341 at 375.998 kb on + strand, within Atu3341 at 376.006 kb on - strand, within Atu3341 at 376.073 kb on + strand, within Atu3341 at 376.081 kb on - strand, within Atu3341 at 376.201 kb on + strand, within Atu3341 at 376.203 kb on - strand, within Atu3341 at 376.206 kb on + strand, within Atu3341 at 376.230 kb on + strand, within Atu3341 at 376.630 kb on + strand at 376.729 kb on - strand at 376.799 kb on - strand, within Atu3342 at 376.833 kb on - strand, within Atu3342 at 376.859 kb on + strand, within Atu3342 at 376.944 kb on + strand, within Atu3342 at 376.984 kb on + strand, within Atu3342 at 376.985 kb on + strand, within Atu3342 at 376.998 kb on - strand, within Atu3342 at 377.163 kb on + strand, within Atu3342 at 377.171 kb on - strand, within Atu3342 at 377.228 kb on - strand, within Atu3342 at 377.307 kb on - strand, within Atu3342 at 377.393 kb on + strand, within Atu3342 at 377.459 kb on + strand at 377.461 kb on - strand at 377.461 kb on - strand at 377.490 kb on - strand at 377.618 kb on + strand, within Atu3343
Per-strain Table
Position Strand Gene LocusTag Fraction alpha-Lactose (C) remove 374,622 + Atu3339 0.84 -0.3 374,622 + Atu3339 0.84 +1.2 374,630 - Atu3339 0.84 -0.2 374,630 - Atu3339 0.84 -0.3 374,774 + +0.6 374,818 + -0.2 374,868 + Atu3340 0.11 -0.2 374,868 + Atu3340 0.11 -0.1 375,057 - Atu3340 0.33 +0.3 375,103 - Atu3340 0.39 -0.2 375,232 - Atu3340 0.54 -0.2 375,301 + Atu3340 0.63 +0.1 375,309 - Atu3340 0.64 +0.6 375,316 - Atu3340 0.65 -0.5 375,347 - Atu3340 0.68 -0.0 375,364 + Atu3340 0.70 -0.2 375,364 + Atu3340 0.70 +0.4 375,372 - Atu3340 0.71 -0.2 375,372 - Atu3340 0.71 -0.1 375,426 - Atu3340 0.78 -0.4 375,577 + +0.7 375,577 + -0.1 375,626 + -0.5 375,665 + +0.2 375,665 + +0.0 375,756 + Atu3341 0.13 +0.1 375,885 + Atu3341 0.26 -0.3 375,981 - Atu3341 0.35 +0.2 375,987 + Atu3341 0.35 -0.3 375,998 + Atu3341 0.37 -0.3 376,006 - Atu3341 0.37 +0.2 376,073 + Atu3341 0.44 +0.5 376,081 - Atu3341 0.45 +0.6 376,201 + Atu3341 0.56 +0.1 376,203 - Atu3341 0.56 +0.4 376,206 + Atu3341 0.57 +0.9 376,230 + Atu3341 0.59 +0.1 376,630 + +0.8 376,729 - -0.3 376,799 - Atu3342 0.12 -0.0 376,833 - Atu3342 0.16 +0.4 376,859 + Atu3342 0.19 -0.2 376,944 + Atu3342 0.30 +0.6 376,984 + Atu3342 0.35 +0.9 376,985 + Atu3342 0.35 -0.3 376,998 - Atu3342 0.37 +0.5 377,163 + Atu3342 0.58 -0.7 377,171 - Atu3342 0.59 -0.0 377,228 - Atu3342 0.66 -0.0 377,307 - Atu3342 0.76 +0.3 377,393 + Atu3342 0.87 -0.8 377,459 + -0.3 377,461 - -0.2 377,461 - -0.2 377,490 - -0.3 377,618 + Atu3343 0.11 +0.5
Or see this region's nucleotide sequence