Strain Fitness in Escherichia coli BW25113 around b1657

Experiment: Adenosine (N)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntydhO and sodB are separated by 127 nucleotidessodB and ydhP are separated by 161 nucleotidesydhP and ynhF are separated by 165 nucleotidesynhF and purR are separated by 298 nucleotides b1655: ydhO - predicted lipoprotein (NCBI), at 1,732,459 to 1,733,274 ydhO b1656: sodB - superoxide dismutase, Fe (NCBI), at 1,733,402 to 1,733,983 sodB b1657: ydhP - predicted transporter (NCBI), at 1,734,145 to 1,735,314 ydhP b4602: ynhF - hypothetical protein (RefSeq), at 1,735,480 to 1,735,569 ynhF b1658: purR - DNA-binding transcriptional repressor, hypoxanthine-binding (NCBI), at 1,735,868 to 1,736,893 purR Position (kb) 1734 1735 1736Strain fitness (log2 ratio) -2 -1 0 1at 1733.172 kb on + strand, within ydhOat 1733.172 kb on + strand, within ydhOat 1733.225 kb on + strandat 1733.425 kb on + strandat 1733.522 kb on + strand, within sodBat 1733.612 kb on + strand, within sodBat 1733.702 kb on + strand, within sodBat 1733.803 kb on - strand, within sodBat 1733.803 kb on - strand, within sodBat 1734.037 kb on - strandat 1734.128 kb on - strandat 1734.128 kb on - strandat 1734.276 kb on + strand, within ydhPat 1734.372 kb on + strand, within ydhPat 1734.375 kb on - strand, within ydhPat 1734.375 kb on - strand, within ydhPat 1734.420 kb on + strand, within ydhPat 1734.590 kb on - strand, within ydhPat 1734.609 kb on + strand, within ydhPat 1734.686 kb on + strand, within ydhPat 1734.726 kb on - strand, within ydhPat 1734.906 kb on - strand, within ydhPat 1734.939 kb on - strand, within ydhPat 1735.214 kb on - strandat 1735.316 kb on + strandat 1735.660 kb on - strandat 1735.660 kb on - strandat 1735.783 kb on + strandat 1735.783 kb on + strandat 1735.791 kb on - strandat 1736.132 kb on + strand, within purRat 1736.147 kb on - strand, within purRat 1736.235 kb on - strand, within purRat 1736.243 kb on - strand, within purRat 1736.255 kb on + strand, within purRat 1736.255 kb on + strand, within purRat 1736.297 kb on + strand, within purR

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Adenosine (N)
remove
1,733,172 + ydhO b1655 0.87 -0.6
1,733,172 + ydhO b1655 0.87 +0.1
1,733,225 + -1.9
1,733,425 + -0.5
1,733,522 + sodB b1656 0.21 +0.4
1,733,612 + sodB b1656 0.36 -0.4
1,733,702 + sodB b1656 0.52 -0.4
1,733,803 - sodB b1656 0.69 +0.8
1,733,803 - sodB b1656 0.69 -0.9
1,734,037 - +0.7
1,734,128 - -0.2
1,734,128 - +1.4
1,734,276 + ydhP b1657 0.11 +0.7
1,734,372 + ydhP b1657 0.19 +0.6
1,734,375 - ydhP b1657 0.20 +0.4
1,734,375 - ydhP b1657 0.20 +0.8
1,734,420 + ydhP b1657 0.24 +1.6
1,734,590 - ydhP b1657 0.38 +0.0
1,734,609 + ydhP b1657 0.40 +1.5
1,734,686 + ydhP b1657 0.46 +0.7
1,734,726 - ydhP b1657 0.50 +0.6
1,734,906 - ydhP b1657 0.65 +0.0
1,734,939 - ydhP b1657 0.68 +0.6
1,735,214 - -0.9
1,735,316 + +0.6
1,735,660 - +1.4
1,735,660 - +0.4
1,735,783 + +0.9
1,735,783 + +0.8
1,735,791 - -0.6
1,736,132 + purR b1658 0.26 +0.4
1,736,147 - purR b1658 0.27 +0.7
1,736,235 - purR b1658 0.36 +0.8
1,736,243 - purR b1658 0.37 -0.1
1,736,255 + purR b1658 0.38 -0.6
1,736,255 + purR b1658 0.38 +0.4
1,736,297 + purR b1658 0.42 -0.2

Or see this region's nucleotide sequence