Strain Fitness in Pseudomonas sp. RS175 around PFR28_02178

Experiment: L-Lactate (C) 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFR28_02177 and PFR28_02178 are separated by 26 nucleotidesPFR28_02178 and PFR28_02179 are separated by 67 nucleotides PFR28_02177: PFR28_02177 - Arginine/ornithine antiporter, at 2,501,716 to 2,503,143 _02177 PFR28_02178: PFR28_02178 - Arginine deiminase, at 2,503,170 to 2,504,426 _02178 PFR28_02179: PFR28_02179 - Ornithine carbamoyltransferase, catabolic, at 2,504,494 to 2,505,504 _02179 Position (kb) 2503 2504 2505Strain fitness (log2 ratio) -2 -1 0 1 2at 2504.961 kb on + strand, within PFR28_02179at 2504.961 kb on + strand, within PFR28_02179at 2504.961 kb on + strand, within PFR28_02179at 2504.974 kb on + strand, within PFR28_02179at 2504.974 kb on + strand, within PFR28_02179at 2504.993 kb on - strand, within PFR28_02179at 2504.993 kb on - strand, within PFR28_02179at 2504.993 kb on - strand, within PFR28_02179

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Lactate (C) 10 mM
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2,504,961 + PFR28_02179 0.46 +0.4
2,504,961 + PFR28_02179 0.46 +0.5
2,504,961 + PFR28_02179 0.46 +1.8
2,504,974 + PFR28_02179 0.47 -2.1
2,504,974 + PFR28_02179 0.47 +0.6
2,504,993 - PFR28_02179 0.49 -0.8
2,504,993 - PFR28_02179 0.49 -0.0
2,504,993 - PFR28_02179 0.49 +1.4

Or see this region's nucleotide sequence