Experiment: m.b. Spectinomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_4346 and Echvi_4347 are separated by 170 nucleotides Echvi_4347 and Echvi_4348 are separated by 87 nucleotides
Echvi_4346: Echvi_4346 - Signal transduction histidine kinase, at 5,200,684 to 5,204,886
_4346
Echvi_4347: Echvi_4347 - DNA repair proteins, at 5,205,057 to 5,205,245
_4347
Echvi_4348: Echvi_4348 - Site-specific recombinase XerD, at 5,205,333 to 5,206,346
_4348
Position (kb) 5205
5206 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5204.066 kb on + strand, within Echvi_4346 at 5204.067 kb on - strand, within Echvi_4346 at 5204.070 kb on + strand, within Echvi_4346 at 5204.070 kb on + strand, within Echvi_4346 at 5204.070 kb on + strand, within Echvi_4346 at 5204.070 kb on + strand, within Echvi_4346 at 5204.070 kb on + strand, within Echvi_4346 at 5204.070 kb on + strand, within Echvi_4346 at 5204.071 kb on - strand, within Echvi_4346 at 5204.071 kb on - strand, within Echvi_4346 at 5204.071 kb on - strand, within Echvi_4346 at 5204.071 kb on - strand, within Echvi_4346 at 5204.103 kb on + strand, within Echvi_4346 at 5204.104 kb on - strand, within Echvi_4346 at 5204.104 kb on - strand, within Echvi_4346 at 5204.112 kb on - strand, within Echvi_4346 at 5204.138 kb on + strand, within Echvi_4346 at 5204.138 kb on + strand, within Echvi_4346 at 5204.138 kb on + strand, within Echvi_4346 at 5204.139 kb on - strand, within Echvi_4346 at 5204.139 kb on - strand, within Echvi_4346 at 5204.175 kb on + strand, within Echvi_4346 at 5204.175 kb on + strand, within Echvi_4346 at 5204.210 kb on + strand, within Echvi_4346 at 5204.211 kb on - strand, within Echvi_4346 at 5204.211 kb on - strand, within Echvi_4346 at 5204.268 kb on + strand, within Echvi_4346 at 5204.271 kb on + strand, within Echvi_4346 at 5204.271 kb on + strand, within Echvi_4346 at 5204.272 kb on - strand, within Echvi_4346 at 5204.273 kb on + strand, within Echvi_4346 at 5204.282 kb on + strand, within Echvi_4346 at 5204.283 kb on - strand, within Echvi_4346 at 5204.312 kb on + strand, within Echvi_4346 at 5204.316 kb on + strand, within Echvi_4346 at 5204.316 kb on + strand, within Echvi_4346 at 5204.317 kb on - strand, within Echvi_4346 at 5204.317 kb on - strand, within Echvi_4346 at 5204.349 kb on + strand, within Echvi_4346 at 5204.405 kb on - strand, within Echvi_4346 at 5204.544 kb on - strand at 5204.544 kb on - strand at 5204.628 kb on + strand at 5204.629 kb on - strand at 5204.629 kb on - strand at 5204.669 kb on + strand at 5204.701 kb on - strand at 5204.701 kb on - strand at 5204.701 kb on - strand at 5204.733 kb on - strand at 5204.769 kb on + strand at 5204.770 kb on - strand at 5204.788 kb on + strand at 5204.788 kb on + strand at 5204.789 kb on - strand at 5204.790 kb on + strand at 5204.790 kb on + strand at 5204.791 kb on - strand at 5204.791 kb on - strand at 5204.815 kb on + strand at 5204.843 kb on + strand at 5204.864 kb on - strand at 5204.891 kb on + strand at 5204.892 kb on - strand at 5204.899 kb on - strand at 5205.016 kb on - strand at 5205.016 kb on - strand at 5205.020 kb on - strand at 5205.020 kb on - strand at 5205.025 kb on - strand at 5205.088 kb on + strand, within Echvi_4347 at 5205.106 kb on - strand, within Echvi_4347 at 5205.110 kb on + strand, within Echvi_4347 at 5205.226 kb on - strand, within Echvi_4347 at 5205.238 kb on - strand at 5205.248 kb on - strand at 5205.248 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.06 mg/ml remove 5,204,066 + Echvi_4346 0.80 +0.5 5,204,067 - Echvi_4346 0.80 +0.8 5,204,070 + Echvi_4346 0.81 +0.8 5,204,070 + Echvi_4346 0.81 -0.6 5,204,070 + Echvi_4346 0.81 +3.8 5,204,070 + Echvi_4346 0.81 +0.9 5,204,070 + Echvi_4346 0.81 +0.2 5,204,070 + Echvi_4346 0.81 -0.6 5,204,071 - Echvi_4346 0.81 +2.2 5,204,071 - Echvi_4346 0.81 -1.9 5,204,071 - Echvi_4346 0.81 +1.9 5,204,071 - Echvi_4346 0.81 -0.4 5,204,103 + Echvi_4346 0.81 -0.5 5,204,104 - Echvi_4346 0.81 +0.3 5,204,104 - Echvi_4346 0.81 -0.1 5,204,112 - Echvi_4346 0.82 -0.6 5,204,138 + Echvi_4346 0.82 -1.6 5,204,138 + Echvi_4346 0.82 -0.8 5,204,138 + Echvi_4346 0.82 +0.5 5,204,139 - Echvi_4346 0.82 +0.3 5,204,139 - Echvi_4346 0.82 -0.2 5,204,175 + Echvi_4346 0.83 -0.1 5,204,175 + Echvi_4346 0.83 -0.4 5,204,210 + Echvi_4346 0.84 -2.3 5,204,211 - Echvi_4346 0.84 -0.6 5,204,211 - Echvi_4346 0.84 -0.9 5,204,268 + Echvi_4346 0.85 -1.0 5,204,271 + Echvi_4346 0.85 -0.9 5,204,271 + Echvi_4346 0.85 -0.8 5,204,272 - Echvi_4346 0.85 -0.2 5,204,273 + Echvi_4346 0.85 +0.1 5,204,282 + Echvi_4346 0.86 +1.8 5,204,283 - Echvi_4346 0.86 -0.4 5,204,312 + Echvi_4346 0.86 -0.2 5,204,316 + Echvi_4346 0.86 -0.4 5,204,316 + Echvi_4346 0.86 +0.4 5,204,317 - Echvi_4346 0.86 +0.5 5,204,317 - Echvi_4346 0.86 -1.0 5,204,349 + Echvi_4346 0.87 -0.1 5,204,405 - Echvi_4346 0.89 -0.2 5,204,544 - +1.0 5,204,544 - +0.2 5,204,628 + +0.4 5,204,629 - -0.6 5,204,629 - +0.4 5,204,669 + +1.6 5,204,701 - -1.2 5,204,701 - -2.1 5,204,701 - -1.6 5,204,733 - -0.3 5,204,769 + +0.2 5,204,770 - -0.1 5,204,788 + -0.9 5,204,788 + +0.2 5,204,789 - +0.1 5,204,790 + +1.8 5,204,790 + +0.5 5,204,791 - +0.2 5,204,791 - -0.3 5,204,815 + +2.8 5,204,843 + +1.1 5,204,864 - +0.5 5,204,891 + +0.8 5,204,892 - +0.3 5,204,899 - +0.1 5,205,016 - -0.6 5,205,016 - -0.5 5,205,020 - +0.7 5,205,020 - -0.9 5,205,025 - +0.5 5,205,088 + Echvi_4347 0.16 -0.7 5,205,106 - Echvi_4347 0.26 -1.7 5,205,110 + Echvi_4347 0.28 -0.0 5,205,226 - Echvi_4347 0.89 -1.8 5,205,238 - -1.0 5,205,248 - -0.0 5,205,248 - -0.0
Or see this region's nucleotide sequence