Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_4238

Experiment: m.b. Spectinomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Spectinomycin 0.06 mg/ml
5,082,097	+		Echvi_4237	0.18	-0.1
5,082,098	-		Echvi_4237	0.18	-0.5
5,082,100	+		Echvi_4237	0.18	+0.4
5,082,336	+		Echvi_4237	0.44	+0.7
5,082,336	+		Echvi_4237	0.44	+0.6
5,082,532	-		Echvi_4237	0.65	+1.1
5,082,594	+		Echvi_4237	0.72	+1.0
5,082,772	+				+0.9
5,082,773	-				-0.1
5,082,938	+				-0.9
5,082,939	-				+3.1
5,082,941	-				+0.5
5,082,965	+				-1.2
5,083,209	-		Echvi_4238	0.29	+1.3
5,083,254	+		Echvi_4238	0.35	-1.3
5,083,254	+		Echvi_4238	0.35	-0.3
5,083,255	-		Echvi_4238	0.35	-0.7
5,083,255	-		Echvi_4238	0.35	-1.0
5,083,308	+		Echvi_4238	0.43	-0.0
5,083,324	+		Echvi_4238	0.45	-1.4
5,083,327	-		Echvi_4238	0.45	-1.8
5,083,455	+		Echvi_4238	0.63	+1.1
5,083,455	+		Echvi_4238	0.63	-0.2
5,083,456	-		Echvi_4238	0.63	-2.7
5,083,456	-		Echvi_4238	0.63	-0.3
5,083,495	-		Echvi_4238	0.69	-0.5
5,083,579	+		Echvi_4238	0.80	-1.5
5,083,625	-		Echvi_4238	0.87	-0.3
5,083,665	+				+0.3
5,083,718	-				+1.0
5,083,734	-				-0.5
5,083,740	+				-0.4
5,083,741	-				-1.1
5,083,742	+				-1.1
5,083,743	-				+0.6
5,083,743	-				-2.1
5,083,746	+				+1.0
5,083,747	-				-1.2
5,083,747	-				+1.2
5,083,797	-				-2.4
5,083,814	-				+1.2
5,083,817	-				+0.2
5,083,869	-				-0.2
5,083,872	-				-0.1
5,083,951	-				+0.4
5,084,007	+				-0.0
5,084,008	-				+1.2
5,084,114	+				+1.7
5,084,114	+				-0.6
5,084,153	-				+1.4
5,084,153	-				-0.1
5,084,313	-				-1.9
5,084,372	+				-0.8
5,084,395	+		Echvi_4239	0.11	-0.3
5,084,395	+		Echvi_4239	0.11	+1.0
5,084,396	-		Echvi_4239	0.11	-1.7
5,084,396	-		Echvi_4239	0.11	+0.5
5,084,407	+		Echvi_4239	0.14	+0.7
5,084,408	-		Echvi_4239	0.15	-0.2
5,084,422	+		Echvi_4239	0.18	-0.2
5,084,422	+		Echvi_4239	0.18	-0.6
5,084,422	+		Echvi_4239	0.18	+1.4
5,084,427	+		Echvi_4239	0.20	-0.4
5,084,427	+		Echvi_4239	0.20	+0.9
5,084,428	-		Echvi_4239	0.20	+1.4
5,084,428	-		Echvi_4239	0.20	-0.0
5,084,432	+		Echvi_4239	0.21	+1.0
5,084,432	+		Echvi_4239	0.21	-1.0
5,084,432	+		Echvi_4239	0.21	-1.6
5,084,433	-		Echvi_4239	0.22	-0.7
5,084,433	-		Echvi_4239	0.22	-1.3
5,084,437	+		Echvi_4239	0.23	+0.5
5,084,437	+		Echvi_4239	0.23	+0.8
5,084,437	+		Echvi_4239	0.23	-0.0
5,084,437	+		Echvi_4239	0.23	-1.1
5,084,437	+		Echvi_4239	0.23	+0.1
5,084,437	+		Echvi_4239	0.23	+2.3
5,084,437	+		Echvi_4239	0.23	+0.5
5,084,438	-		Echvi_4239	0.23	-0.6
5,084,438	-		Echvi_4239	0.23	-0.4
5,084,438	-		Echvi_4239	0.23	-2.3
5,084,438	-		Echvi_4239	0.23	-0.1
5,084,440	+		Echvi_4239	0.24	+1.5
5,084,440	+		Echvi_4239	0.24	-1.3
5,084,441	-		Echvi_4239	0.24	-1.1
5,084,442	+		Echvi_4239	0.24	-0.9
5,084,443	-		Echvi_4239	0.24	+2.0
5,084,494	+		Echvi_4239	0.39	+0.6
5,084,494	+		Echvi_4239	0.39	+0.7
5,084,494	+		Echvi_4239	0.39	-0.4
5,084,494	+		Echvi_4239	0.39	+0.1
5,084,495	-				+0.4
5,084,495	-		Echvi_4239	0.39	-0.1
5,084,495	-		Echvi_4239	0.39	-0.2
5,084,495	-		Echvi_4239	0.39	-0.9
5,084,495	-		Echvi_4239	0.39	-0.1
5,084,496	+		Echvi_4239	0.39	+0.2
5,084,497	-		Echvi_4239	0.39	-0.5
5,084,556	-		Echvi_4239	0.56	+0.9
5,084,556	-		Echvi_4239	0.56	-1.6
5,084,559	+		Echvi_4239	0.57	-0.4
5,084,560	-		Echvi_4239	0.57	+0.1
5,084,560	-		Echvi_4239	0.57	+1.9
5,084,581	+		Echvi_4239	0.63	-0.9
5,084,597	-		Echvi_4239	0.68	+0.7
5,084,602	-		Echvi_4239	0.69	-0.5
5,084,602	-		Echvi_4239	0.69	+2.1
5,084,621	+		Echvi_4239	0.74	+0.5
5,084,623	-		Echvi_4239	0.75	-2.3
5,084,623	-		Echvi_4239	0.75	-1.4
5,084,626	+		Echvi_4239	0.76	+0.1