Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_3220

Experiment: m.b. Spectinomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Spectinomycin 0.06 mg/ml
3,820,864	+		Echvi_3219	0.48	+1.0
3,820,864	+		Echvi_3219	0.48	-0.2
3,820,865	-		Echvi_3219	0.48	-0.5
3,820,865	-		Echvi_3219	0.48	-0.5
3,820,912	+		Echvi_3219	0.53	+0.0
3,820,921	-		Echvi_3219	0.54	-0.4
3,820,922	+		Echvi_3219	0.54	+0.2
3,820,923	-		Echvi_3219	0.54	-1.3
3,820,931	-		Echvi_3219	0.55	-0.8
3,820,943	-		Echvi_3219	0.56	-0.5
3,820,943	-		Echvi_3219	0.56	+0.2
3,820,969	+		Echvi_3219	0.58	-0.2
3,820,995	-		Echvi_3219	0.61	-1.6
3,821,011	+		Echvi_3219	0.62	+1.9
3,821,015	+		Echvi_3219	0.63	+0.3
3,821,016	-		Echvi_3219	0.63	-1.6
3,821,035	+		Echvi_3219	0.65	-1.5
3,821,035	+		Echvi_3219	0.65	+1.3
3,821,036	-		Echvi_3219	0.65	+0.0
3,821,086	-		Echvi_3219	0.70	-1.2
3,821,086	-		Echvi_3219	0.70	+0.1
3,821,118	-		Echvi_3219	0.73	+1.6
3,821,137	+		Echvi_3219	0.75	+0.3
3,821,137	+		Echvi_3219	0.75	+2.0
3,821,137	+		Echvi_3219	0.75	+0.4
3,821,137	+		Echvi_3219	0.75	-0.8
3,821,137	+		Echvi_3219	0.75	-0.6
3,821,138	-		Echvi_3219	0.75	+0.1
3,821,140	-		Echvi_3219	0.75	+0.2
3,821,140	-		Echvi_3219	0.75	+0.0
3,821,161	+		Echvi_3219	0.77	+1.6
3,821,272	+		Echvi_3219	0.88	-2.0
3,821,272	+		Echvi_3219	0.88	+0.8
3,821,287	+		Echvi_3219	0.89	-1.2
3,821,287	+		Echvi_3219	0.89	-0.8
3,821,330	-				+0.4
3,821,330	-				-0.6
3,821,330	-				-0.2
3,821,330	-				-0.5
3,821,344	-				+0.2
3,821,403	-				-0.7
3,821,425	+				+1.2
3,821,455	+				-0.7
3,821,455	+				+1.1
3,821,455	+				-0.6
3,821,456	-				-1.7
3,821,488	+				-0.5
3,821,488	+				-1.7
3,821,634	+				-1.7
3,821,654	+				+1.6
3,821,671	-				+0.2
3,821,691	+				-0.1
3,821,698	+				+0.0
3,821,698	+				+0.0
3,821,743	-				-1.2
3,821,796	+				-0.1
3,821,880	-		Echvi_3220	0.13	-2.2
3,821,925	-		Echvi_3220	0.23	+0.4
3,821,937	+		Echvi_3220	0.25	+0.9
3,821,937	+		Echvi_3220	0.25	-0.1
3,821,938	-		Echvi_3220	0.26	-0.9
3,821,968	+		Echvi_3220	0.32	-0.7
3,821,969	-		Echvi_3220	0.32	-2.8
3,821,969	-		Echvi_3220	0.32	-1.1
3,821,972	+		Echvi_3220	0.33	-0.5
3,822,336	-				-0.9
3,822,340	+				-1.0
3,822,345	+				+0.4
3,822,345	+				-0.3
3,822,345	+				-1.4
3,822,634	+		Echvi_3221	0.62	-0.7
3,822,634	+		Echvi_3221	0.62	+1.4
3,822,634	+		Echvi_3221	0.62	-0.1
3,822,635	-		Echvi_3221	0.62	+0.6
3,822,635	-		Echvi_3221	0.62	-1.4
3,822,635	-		Echvi_3221	0.62	+0.8
3,822,635	-		Echvi_3221	0.62	+0.0
3,822,635	-		Echvi_3221	0.62	+0.2
3,822,666	-		Echvi_3221	0.70	-0.3
3,822,743	+				-0.2
3,822,743	+				-0.7
3,822,760	+				+0.4
3,822,760	+				+0.8
3,822,761	-				+0.0
3,822,762	+				+1.1
3,822,763	-				-1.3
3,822,764	+				-0.3
3,822,764	+				-0.2
3,822,765	-				-0.5
3,822,765	-				+0.4
3,822,765	-				-0.3
3,822,765	-				-0.5
3,822,765	-				+1.4
3,822,765	-				-0.6
3,822,765	-				-0.1
3,822,765	-				+0.2
3,822,765	-				-1.3
3,822,765	-				-0.0
3,822,765	-				+1.6
3,822,787	+				-0.7
3,822,793	-				+0.1
3,822,819	+				-0.3
3,822,819	+				+0.7
3,822,823	+				-0.2
3,822,823	+				+0.3
3,822,838	+				+0.2
3,822,874	+				+0.3
3,822,904	-				-0.6
3,822,958	+				-0.9
3,822,983	+				+0.3
3,822,992	+				-0.1
3,823,102	+				-0.3
3,823,102	+				-0.1
3,823,108	+				-1.0
3,823,108	+				-1.0
3,823,108	+				+0.0
3,823,108	+				+0.5
3,823,109	-		Echvi_3222	0.10	-1.2
3,823,109	-		Echvi_3222	0.10	+0.7
3,823,109	-		Echvi_3222	0.10	-0.4
3,823,126	+		Echvi_3222	0.16	+1.2
3,823,127	-		Echvi_3222	0.16	-0.8
3,823,143	+		Echvi_3222	0.22	-0.2
3,823,209	+		Echvi_3222	0.46	-0.6
3,823,209	+		Echvi_3222	0.46	-0.8
3,823,210	-		Echvi_3222	0.46	+1.9
3,823,224	+		Echvi_3222	0.51	-1.4
3,823,247	-		Echvi_3222	0.59	-0.1
3,823,247	-		Echvi_3222	0.59	+0.2