Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0946

Experiment: m.b. Spectinomycin 0.06 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	m.b. Spectinomycin 0.06 mg/ml
1,089,155	+				-0.2
1,089,179	+				+0.4
1,089,179	+				-0.1
1,089,180	-				+1.1
1,089,180	-				-0.5
1,089,192	+				+1.1
1,089,192	+				-0.7
1,089,192	+				-0.2
1,089,198	-				-2.9
1,089,198	-				-0.9
1,089,208	+				+0.2
1,089,246	+				-0.1
1,089,252	+				-0.9
1,089,253	-				-0.8
1,089,260	-				+0.4
1,089,263	+				+0.0
1,089,263	+				+1.0
1,089,284	+				-0.4
1,089,289	+				-0.5
1,089,289	+				+0.9
1,089,290	-				-1.0
1,089,299	+				-0.1
1,089,300	-				-0.3
1,089,324	-				-0.0
1,089,324	-				-0.3
1,089,325	+				+0.1
1,089,325	+				-0.3
1,089,326	-				-0.7
1,089,326	-				-0.6
1,089,332	-				+1.9
1,089,336	+				-2.2
1,089,337	-				+0.1
1,089,355	+		Echvi_0944	0.12	+0.0
1,089,355	+		Echvi_0944	0.12	+1.2
1,089,355	+		Echvi_0944	0.12	+1.6
1,089,355	+		Echvi_0944	0.12	+0.2
1,089,356	-		Echvi_0944	0.12	-0.7
1,089,356	-		Echvi_0944	0.12	-0.4
1,089,450	+		Echvi_0944	0.31	-0.8
1,089,451	-		Echvi_0944	0.31	-0.4
1,089,451	-		Echvi_0944	0.31	+1.1
1,089,473	-		Echvi_0944	0.35	-0.9
1,089,473	-		Echvi_0944	0.35	+0.1
1,089,494	+		Echvi_0944	0.39	+0.5
1,089,494	+		Echvi_0944	0.39	-1.0
1,089,494	+		Echvi_0944	0.39	-2.8
1,089,494	+		Echvi_0944	0.39	+0.0
1,089,494	+		Echvi_0944	0.39	-1.1
1,089,495	-		Echvi_0944	0.40	-0.1
1,089,495	-		Echvi_0944	0.40	-1.3
1,089,495	-		Echvi_0944	0.40	+1.3
1,089,504	+		Echvi_0944	0.41	+0.6
1,089,570	+		Echvi_0944	0.54	+0.4
1,089,570	+		Echvi_0944	0.54	-0.7
1,089,571	-		Echvi_0944	0.55	+1.9
1,089,571	-		Echvi_0944	0.55	+0.0
1,089,614	-		Echvi_0944	0.63	+0.1
1,089,663	+		Echvi_0944	0.73	-1.0
1,089,663	+		Echvi_0944	0.73	-0.6
1,089,664	-		Echvi_0944	0.73	-0.7
1,089,664	-		Echvi_0944	0.73	-0.1
1,089,731	-		Echvi_0944	0.86	+0.1
1,089,731	-		Echvi_0944	0.86	-1.4
1,089,731	-		Echvi_0944	0.86	+1.8
1,089,731	-		Echvi_0944	0.86	+0.0
1,089,731	-		Echvi_0944	0.86	-1.4
1,089,731	-		Echvi_0944	0.86	-0.2
1,089,779	+				-0.6
1,089,787	-				-1.2
1,089,787	-				+2.7
1,089,805	+		Echvi_0945	0.44	-1.6
1,089,815	+		Echvi_0945	0.51	-1.2
1,089,832	+		Echvi_0945	0.64	+0.3
1,089,845	+		Echvi_0945	0.73	-1.5
1,089,851	+		Echvi_0945	0.78	-1.1
1,089,856	+		Echvi_0945	0.81	+0.3
1,089,859	-		Echvi_0945	0.83	+0.3
1,089,859	-		Echvi_0945	0.83	+1.3
1,089,896	+				+0.4
1,089,896	+				+0.3
1,089,897	-				-1.0
1,089,916	+				-1.2
1,089,916	+				-0.4
1,089,916	+				+1.9
1,089,917	-				+1.0
1,089,917	-				-0.0
1,089,917	-				-1.0
1,089,917	-				+0.3
1,089,921	+				-1.8
1,089,921	+				-1.2
1,089,921	+				-0.4
1,089,921	+				-0.7
1,089,922	-				-0.4
1,089,922	-				-1.2
1,089,925	+				+0.1
1,089,925	+				+0.7
1,089,926	-				-1.3
1,089,926	-				-1.2
1,089,959	+				+0.3
1,089,959	+				-0.4
1,089,960	-				+1.0
1,089,960	-				-1.0
1,089,963	+				-0.1
1,089,964	-				-1.0
1,089,964	-				+0.5
1,089,980	+				-1.1
1,089,980	+				-1.2
1,089,980	+				-0.3
1,089,998	-				-0.2
1,089,998	-				+0.0
1,090,000	-				-1.4
1,090,011	+				-0.6
1,090,011	+				-0.4
1,090,011	+				-0.4
1,090,011	+				+0.9
1,090,012	-				-0.5
1,090,012	-				+1.3
1,090,012	-				+0.3
1,090,012	-				-1.3
1,090,012	-				-0.8
1,090,012	-				+1.3
1,090,015	-				-1.2
1,090,037	+				+0.8
1,090,038	-				+1.3
1,090,040	+				-0.8
1,090,040	+				-1.5
1,090,040	+				-0.2
1,090,040	+				+1.3
1,090,040	+				-1.7
1,090,040	+				-0.2
1,090,041	-				-0.7
1,090,041	-				-0.5
1,090,041	-				+0.9
1,090,041	-				-1.2
1,090,074	+				-0.5
1,090,094	+				-1.4
1,090,116	-				-0.7
1,090,123	+				-0.2
1,090,124	-				+0.9
1,090,124	-				-1.2
1,090,124	-				+0.0
1,090,134	+				-0.1
1,090,134	+				+1.3
1,090,135	-				-0.1
1,090,135	-				-0.7
1,090,135	-				+1.0
1,090,138	+				+1.8
1,090,138	+				-1.3
1,090,142	+				+0.6
1,090,142	+				+0.4
1,090,152	+				+0.9
1,090,156	+				+0.4
1,090,156	+				-0.5
1,090,156	+				-0.0
1,090,156	+				-0.1
1,090,156	+				+0.7
1,090,157	-				+0.9
1,090,157	-				+0.1
1,090,221	+		Echvi_0946	0.18	-0.7
1,090,222	-		Echvi_0946	0.18	-1.3
1,090,330	+		Echvi_0946	0.47	+0.3
1,090,354	+		Echvi_0946	0.53	-0.6
1,090,354	+		Echvi_0946	0.53	-2.8
1,090,391	+		Echvi_0946	0.63	-1.9
1,090,392	-		Echvi_0946	0.64	-0.4
1,090,393	+		Echvi_0946	0.64	+0.9
1,090,393	+		Echvi_0946	0.64	-0.1
1,090,431	+		Echvi_0946	0.74	+0.6
1,090,450	-		Echvi_0946	0.79	-0.3
1,090,510	+				-0.4
1,090,511	-				+0.9
1,090,532	-				+0.4
1,090,580	+				+3.9
1,090,582	+				-2.2
1,090,583	-				-0.8
1,090,637	+				+1.2
1,090,637	+				+0.3
1,090,637	+				-0.7
1,090,687	-				-0.9
1,090,687	-				-0.1
1,090,741	+				-0.5
1,090,789	-				-1.1
1,090,806	+				+0.7
1,090,806	+				+0.7
1,090,815	+				+1.1
1,090,815	+				-0.9
1,090,824	-				-0.1
1,090,824	-				-1.0
1,090,893	+				-0.4
1,090,893	+				+0.5
1,090,893	+				+1.3
1,090,893	+				-0.1
1,090,894	-				-0.9
1,090,936	+		Echvi_0947	0.10	+0.6
1,090,936	+		Echvi_0947	0.10	+0.5
1,090,936	+		Echvi_0947	0.10	+0.3
1,090,936	+		Echvi_0947	0.10	+0.4
1,090,940	-		Echvi_0947	0.11	+0.7
1,090,940	-		Echvi_0947	0.11	+0.6
1,090,940	-		Echvi_0947	0.11	-1.8
1,090,984	-		Echvi_0947	0.14	+1.6
1,090,988	+		Echvi_0947	0.15	-2.2
1,091,037	+		Echvi_0947	0.19	+0.2
1,091,038	-		Echvi_0947	0.19	-1.0
1,091,038	-		Echvi_0947	0.19	+0.1
1,091,069	-		Echvi_0947	0.22	+0.3
1,091,094	+		Echvi_0947	0.24	+0.7
1,091,094	+		Echvi_0947	0.24	-1.6
1,091,094	+		Echvi_0947	0.24	-0.8
1,091,111	+		Echvi_0947	0.26	+1.3
1,091,111	+		Echvi_0947	0.26	-0.1
1,091,129	+		Echvi_0947	0.27	+0.9
1,091,129	+		Echvi_0947	0.27	-0.8
1,091,129	+		Echvi_0947	0.27	-0.2
1,091,129	+		Echvi_0947	0.27	-1.3
1,091,130	-		Echvi_0947	0.27	-1.4
1,091,130	-		Echvi_0947	0.27	+0.1
1,091,132	+		Echvi_0947	0.28	+0.9
1,091,132	+		Echvi_0947	0.28	+0.4
1,091,133	-		Echvi_0947	0.28	-1.5
1,091,133	-		Echvi_0947	0.28	-0.8
1,091,144	-		Echvi_0947	0.29	+0.3
1,091,191	+		Echvi_0947	0.33	+1.7
1,091,222	+		Echvi_0947	0.36	+1.3
1,091,222	+		Echvi_0947	0.36	+1.1
1,091,271	+		Echvi_0947	0.40	+0.1
1,091,398	-		Echvi_0947	0.51	+1.1
1,091,432	+		Echvi_0947	0.54	+0.0
1,091,469	-		Echvi_0947	0.58	-0.3
1,091,524	-		Echvi_0947	0.63	-1.2