Experiment: m.b. Spectinomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0545 and Echvi_0546 are separated by 73 nucleotides Echvi_0546 and Echvi_0547 are separated by 30 nucleotides
Echvi_0545: Echvi_0545 - hypothetical protein, at 611,042 to 613,243
_0545
Echvi_0546: Echvi_0546 - hypothetical protein, at 613,317 to 614,129
_0546
Echvi_0547: Echvi_0547 - SusD family., at 614,160 to 616,307
_0547
Position (kb) 613
614
615 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 612.415 kb on + strand, within Echvi_0545 at 612.415 kb on + strand, within Echvi_0545 at 612.415 kb on + strand, within Echvi_0545 at 612.415 kb on + strand, within Echvi_0545 at 612.416 kb on - strand, within Echvi_0545 at 612.417 kb on + strand, within Echvi_0545 at 612.420 kb on + strand, within Echvi_0545 at 612.420 kb on + strand, within Echvi_0545 at 612.460 kb on + strand, within Echvi_0545 at 612.460 kb on + strand, within Echvi_0545 at 612.461 kb on - strand, within Echvi_0545 at 612.462 kb on + strand, within Echvi_0545 at 612.494 kb on - strand, within Echvi_0545 at 612.525 kb on + strand, within Echvi_0545 at 612.548 kb on + strand, within Echvi_0545 at 612.553 kb on - strand, within Echvi_0545 at 612.569 kb on - strand, within Echvi_0545 at 612.569 kb on - strand, within Echvi_0545 at 612.569 kb on - strand, within Echvi_0545 at 612.624 kb on + strand, within Echvi_0545 at 612.625 kb on - strand, within Echvi_0545 at 612.625 kb on - strand, within Echvi_0545 at 612.627 kb on + strand, within Echvi_0545 at 612.628 kb on - strand, within Echvi_0545 at 612.636 kb on + strand, within Echvi_0545 at 612.637 kb on - strand, within Echvi_0545 at 612.637 kb on - strand, within Echvi_0545 at 612.647 kb on - strand, within Echvi_0545 at 612.658 kb on - strand, within Echvi_0545 at 612.658 kb on - strand, within Echvi_0545 at 612.662 kb on - strand, within Echvi_0545 at 612.705 kb on + strand, within Echvi_0545 at 612.736 kb on + strand, within Echvi_0545 at 612.736 kb on + strand, within Echvi_0545 at 612.737 kb on - strand, within Echvi_0545 at 612.737 kb on - strand, within Echvi_0545 at 612.737 kb on - strand, within Echvi_0545 at 612.737 kb on - strand, within Echvi_0545 at 612.739 kb on - strand, within Echvi_0545 at 612.775 kb on - strand, within Echvi_0545 at 612.792 kb on - strand, within Echvi_0545 at 612.858 kb on + strand, within Echvi_0545 at 612.858 kb on + strand, within Echvi_0545 at 612.859 kb on - strand, within Echvi_0545 at 612.859 kb on - strand, within Echvi_0545 at 612.868 kb on + strand, within Echvi_0545 at 612.869 kb on - strand, within Echvi_0545 at 612.869 kb on - strand, within Echvi_0545 at 612.887 kb on - strand, within Echvi_0545 at 613.043 kb on - strand at 613.043 kb on - strand at 613.190 kb on - strand at 613.221 kb on + strand at 613.222 kb on - strand at 613.227 kb on - strand at 613.304 kb on - strand at 613.314 kb on + strand at 613.315 kb on - strand at 613.348 kb on + strand at 613.349 kb on - strand at 613.391 kb on + strand at 613.392 kb on - strand at 613.511 kb on + strand, within Echvi_0546 at 613.511 kb on + strand, within Echvi_0546 at 613.556 kb on - strand, within Echvi_0546 at 613.560 kb on + strand, within Echvi_0546 at 613.560 kb on + strand, within Echvi_0546 at 613.561 kb on - strand, within Echvi_0546 at 613.601 kb on + strand, within Echvi_0546 at 613.602 kb on - strand, within Echvi_0546 at 613.603 kb on + strand, within Echvi_0546 at 613.745 kb on + strand, within Echvi_0546 at 613.745 kb on + strand, within Echvi_0546 at 613.763 kb on + strand, within Echvi_0546 at 613.820 kb on + strand, within Echvi_0546 at 613.820 kb on + strand, within Echvi_0546 at 613.853 kb on + strand, within Echvi_0546 at 613.853 kb on + strand, within Echvi_0546 at 613.855 kb on + strand, within Echvi_0546 at 613.965 kb on + strand, within Echvi_0546 at 613.966 kb on - strand, within Echvi_0546 at 614.010 kb on + strand, within Echvi_0546 at 614.010 kb on + strand, within Echvi_0546 at 614.010 kb on + strand, within Echvi_0546 at 614.011 kb on - strand, within Echvi_0546 at 614.011 kb on - strand, within Echvi_0546 at 614.054 kb on - strand at 614.110 kb on - strand at 614.110 kb on - strand at 614.113 kb on + strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.114 kb on - strand at 614.153 kb on + strand at 614.157 kb on - strand at 614.224 kb on + strand at 614.224 kb on + strand at 614.237 kb on + strand at 614.242 kb on + strand at 614.291 kb on - strand at 614.321 kb on - strand at 614.404 kb on + strand, within Echvi_0547 at 614.486 kb on + strand, within Echvi_0547 at 614.487 kb on - strand, within Echvi_0547 at 614.487 kb on - strand, within Echvi_0547 at 614.487 kb on - strand, within Echvi_0547 at 614.487 kb on - strand, within Echvi_0547 at 614.553 kb on - strand, within Echvi_0547 at 614.574 kb on + strand, within Echvi_0547 at 614.575 kb on - strand, within Echvi_0547 at 614.604 kb on + strand, within Echvi_0547 at 614.604 kb on + strand, within Echvi_0547 at 614.665 kb on + strand, within Echvi_0547 at 614.665 kb on + strand, within Echvi_0547 at 614.666 kb on - strand, within Echvi_0547 at 614.738 kb on + strand, within Echvi_0547 at 614.739 kb on - strand, within Echvi_0547 at 614.746 kb on + strand, within Echvi_0547 at 614.746 kb on + strand, within Echvi_0547 at 614.746 kb on + strand, within Echvi_0547 at 614.747 kb on - strand, within Echvi_0547 at 614.747 kb on - strand, within Echvi_0547 at 614.888 kb on + strand, within Echvi_0547 at 614.889 kb on - strand, within Echvi_0547 at 614.890 kb on + strand, within Echvi_0547 at 614.924 kb on + strand, within Echvi_0547 at 614.977 kb on - strand, within Echvi_0547 at 614.977 kb on - strand, within Echvi_0547 at 614.977 kb on - strand, within Echvi_0547 at 615.034 kb on + strand, within Echvi_0547 at 615.085 kb on + strand, within Echvi_0547 at 615.085 kb on + strand, within Echvi_0547 at 615.086 kb on - strand, within Echvi_0547 at 615.094 kb on + strand, within Echvi_0547
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.06 mg/ml remove 612,415 + Echvi_0545 0.62 +0.1 612,415 + Echvi_0545 0.62 -2.4 612,415 + Echvi_0545 0.62 -0.4 612,415 + Echvi_0545 0.62 -0.4 612,416 - Echvi_0545 0.62 +3.5 612,417 + Echvi_0545 0.62 +0.3 612,420 + Echvi_0545 0.63 +0.1 612,420 + Echvi_0545 0.63 -1.8 612,460 + Echvi_0545 0.64 -0.2 612,460 + Echvi_0545 0.64 +0.4 612,461 - Echvi_0545 0.64 +0.6 612,462 + Echvi_0545 0.64 +2.5 612,494 - Echvi_0545 0.66 +0.9 612,525 + Echvi_0545 0.67 +0.2 612,548 + Echvi_0545 0.68 +0.1 612,553 - Echvi_0545 0.69 +0.9 612,569 - Echvi_0545 0.69 +0.4 612,569 - Echvi_0545 0.69 -0.3 612,569 - Echvi_0545 0.69 +0.2 612,624 + Echvi_0545 0.72 +0.3 612,625 - Echvi_0545 0.72 -1.1 612,625 - Echvi_0545 0.72 -0.5 612,627 + Echvi_0545 0.72 -1.3 612,628 - Echvi_0545 0.72 -0.7 612,636 + Echvi_0545 0.72 -0.4 612,637 - Echvi_0545 0.72 -0.8 612,637 - Echvi_0545 0.72 +0.7 612,647 - Echvi_0545 0.73 -1.2 612,658 - Echvi_0545 0.73 +1.5 612,658 - Echvi_0545 0.73 -0.2 612,662 - Echvi_0545 0.74 +0.5 612,705 + Echvi_0545 0.76 +0.0 612,736 + Echvi_0545 0.77 -0.8 612,736 + Echvi_0545 0.77 -0.7 612,737 - Echvi_0545 0.77 +0.1 612,737 - Echvi_0545 0.77 -0.0 612,737 - Echvi_0545 0.77 +0.9 612,737 - Echvi_0545 0.77 +1.1 612,739 - Echvi_0545 0.77 +0.4 612,775 - Echvi_0545 0.79 +1.6 612,792 - Echvi_0545 0.79 +1.4 612,858 + Echvi_0545 0.82 +0.7 612,858 + Echvi_0545 0.82 +1.0 612,859 - Echvi_0545 0.83 +1.9 612,859 - Echvi_0545 0.83 -0.9 612,868 + Echvi_0545 0.83 +0.3 612,869 - Echvi_0545 0.83 +1.0 612,869 - Echvi_0545 0.83 +0.2 612,887 - Echvi_0545 0.84 +1.2 613,043 - +0.9 613,043 - -0.2 613,190 - +0.6 613,221 + +0.8 613,222 - +0.5 613,227 - -0.2 613,304 - -2.5 613,314 + +0.3 613,315 - -0.8 613,348 + +0.4 613,349 - -0.0 613,391 + -0.5 613,392 - +0.2 613,511 + Echvi_0546 0.24 -0.4 613,511 + Echvi_0546 0.24 -1.2 613,556 - Echvi_0546 0.29 -0.3 613,560 + Echvi_0546 0.30 +0.6 613,560 + Echvi_0546 0.30 +0.9 613,561 - Echvi_0546 0.30 +1.6 613,601 + Echvi_0546 0.35 +0.3 613,602 - Echvi_0546 0.35 -0.1 613,603 + Echvi_0546 0.35 +0.3 613,745 + Echvi_0546 0.53 +1.3 613,745 + Echvi_0546 0.53 +0.8 613,763 + Echvi_0546 0.55 -0.2 613,820 + Echvi_0546 0.62 +0.2 613,820 + Echvi_0546 0.62 +1.5 613,853 + Echvi_0546 0.66 -0.4 613,853 + Echvi_0546 0.66 +0.3 613,855 + Echvi_0546 0.66 +0.9 613,965 + Echvi_0546 0.80 -1.5 613,966 - Echvi_0546 0.80 -1.3 614,010 + Echvi_0546 0.85 -0.1 614,010 + Echvi_0546 0.85 +1.3 614,010 + Echvi_0546 0.85 +0.9 614,011 - Echvi_0546 0.85 +1.4 614,011 - Echvi_0546 0.85 +0.3 614,054 - -0.9 614,110 - -0.1 614,110 - -0.2 614,113 + -0.4 614,114 - +1.9 614,114 - +0.6 614,114 - -0.9 614,114 - -0.9 614,114 - -0.2 614,114 - +0.2 614,153 + +0.0 614,157 - +0.5 614,224 + +1.1 614,224 + -1.4 614,237 + -0.3 614,242 + +0.6 614,291 - +0.5 614,321 - -1.2 614,404 + Echvi_0547 0.11 +0.0 614,486 + Echvi_0547 0.15 +0.3 614,487 - Echvi_0547 0.15 -2.4 614,487 - Echvi_0547 0.15 +1.1 614,487 - Echvi_0547 0.15 -1.1 614,487 - Echvi_0547 0.15 -0.9 614,553 - Echvi_0547 0.18 +0.9 614,574 + Echvi_0547 0.19 +0.8 614,575 - Echvi_0547 0.19 +0.3 614,604 + Echvi_0547 0.21 +1.3 614,604 + Echvi_0547 0.21 +0.5 614,665 + Echvi_0547 0.24 -1.6 614,665 + Echvi_0547 0.24 +0.1 614,666 - Echvi_0547 0.24 -0.2 614,738 + Echvi_0547 0.27 -0.4 614,739 - Echvi_0547 0.27 +0.6 614,746 + Echvi_0547 0.27 -0.3 614,746 + Echvi_0547 0.27 +0.8 614,746 + Echvi_0547 0.27 +0.4 614,747 - Echvi_0547 0.27 -0.1 614,747 - Echvi_0547 0.27 +0.3 614,888 + Echvi_0547 0.34 +0.7 614,889 - Echvi_0547 0.34 +1.6 614,890 + Echvi_0547 0.34 +0.7 614,924 + Echvi_0547 0.36 -3.2 614,977 - Echvi_0547 0.38 -0.3 614,977 - Echvi_0547 0.38 -1.1 614,977 - Echvi_0547 0.38 +0.2 615,034 + Echvi_0547 0.41 -0.9 615,085 + Echvi_0547 0.43 +1.4 615,085 + Echvi_0547 0.43 -0.7 615,086 - Echvi_0547 0.43 -0.5 615,094 + Echvi_0547 0.43 -0.5
Or see this region's nucleotide sequence