Experiment: m.b. Spectinomycin 0.06 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Echvi_0524 and Echvi_0525 are separated by 166 nucleotides Echvi_0525 and Echvi_0526 are separated by 153 nucleotides Echvi_0526 and Echvi_0527 are separated by 93 nucleotides Echvi_0527 and Echvi_0528 are separated by 46 nucleotides Echvi_0528 and Echvi_0529 are separated by 8 nucleotides
Echvi_0524: Echvi_0524 - hypothetical protein, at 592,336 to 594,291
_0524
Echvi_0525: Echvi_0525 - hypothetical protein, at 594,458 to 595,132
_0525
Echvi_0526: Echvi_0526 - hypothetical protein, at 595,286 to 595,378
_0526
Echvi_0527: Echvi_0527 - Predicted endonuclease containing a URI domain, at 595,472 to 595,720
_0527
Echvi_0528: Echvi_0528 - tRNA, at 595,767 to 595,843
_0528
Echvi_0529: Echvi_0529 - Predicted endonuclease containing a URI domain, at 595,852 to 596,106
_0529
Position (kb) 594
595
596 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 593.557 kb on - strand, within Echvi_0524 at 593.627 kb on + strand, within Echvi_0524 at 593.627 kb on + strand, within Echvi_0524 at 593.696 kb on + strand, within Echvi_0524 at 593.696 kb on + strand, within Echvi_0524 at 593.696 kb on + strand, within Echvi_0524 at 593.696 kb on + strand, within Echvi_0524 at 593.696 kb on + strand, within Echvi_0524 at 593.696 kb on + strand, within Echvi_0524 at 593.696 kb on + strand, within Echvi_0524 at 593.697 kb on - strand, within Echvi_0524 at 593.720 kb on - strand, within Echvi_0524 at 593.778 kb on + strand, within Echvi_0524 at 593.850 kb on - strand, within Echvi_0524 at 593.890 kb on + strand, within Echvi_0524 at 593.890 kb on + strand, within Echvi_0524 at 593.890 kb on + strand, within Echvi_0524 at 593.891 kb on - strand, within Echvi_0524 at 593.891 kb on - strand, within Echvi_0524 at 594.007 kb on + strand, within Echvi_0524 at 594.007 kb on + strand, within Echvi_0524 at 594.069 kb on + strand, within Echvi_0524 at 594.104 kb on + strand at 594.104 kb on + strand at 594.126 kb on - strand at 594.158 kb on + strand at 594.159 kb on - strand at 594.180 kb on + strand at 594.180 kb on + strand at 594.232 kb on - strand at 594.254 kb on - strand at 594.254 kb on - strand at 594.254 kb on - strand at 594.283 kb on - strand at 594.285 kb on - strand at 594.292 kb on - strand at 594.305 kb on + strand at 594.325 kb on - strand at 594.351 kb on + strand at 594.367 kb on + strand at 594.398 kb on + strand at 594.460 kb on - strand at 594.465 kb on - strand at 594.471 kb on + strand at 594.471 kb on + strand at 594.589 kb on + strand, within Echvi_0525 at 594.589 kb on + strand, within Echvi_0525 at 594.592 kb on + strand, within Echvi_0525 at 594.593 kb on - strand, within Echvi_0525 at 594.593 kb on - strand, within Echvi_0525 at 594.593 kb on - strand, within Echvi_0525 at 594.607 kb on + strand, within Echvi_0525 at 594.609 kb on + strand, within Echvi_0525 at 594.609 kb on + strand, within Echvi_0525 at 594.610 kb on - strand, within Echvi_0525 at 594.612 kb on + strand, within Echvi_0525 at 594.612 kb on + strand, within Echvi_0525 at 594.612 kb on + strand, within Echvi_0525 at 594.613 kb on - strand, within Echvi_0525 at 594.614 kb on + strand, within Echvi_0525 at 594.614 kb on + strand, within Echvi_0525 at 594.614 kb on + strand, within Echvi_0525 at 594.614 kb on + strand, within Echvi_0525 at 594.614 kb on + strand, within Echvi_0525 at 594.614 kb on + strand, within Echvi_0525 at 594.651 kb on + strand, within Echvi_0525 at 594.651 kb on + strand, within Echvi_0525 at 594.651 kb on + strand, within Echvi_0525 at 594.651 kb on + strand, within Echvi_0525 at 594.658 kb on + strand, within Echvi_0525 at 594.658 kb on + strand, within Echvi_0525 at 594.658 kb on + strand, within Echvi_0525 at 594.659 kb on - strand, within Echvi_0525 at 594.659 kb on - strand, within Echvi_0525 at 594.722 kb on + strand, within Echvi_0525 at 594.780 kb on + strand, within Echvi_0525 at 594.781 kb on - strand, within Echvi_0525 at 594.781 kb on - strand, within Echvi_0525 at 594.801 kb on - strand, within Echvi_0525 at 594.814 kb on - strand, within Echvi_0525 at 594.818 kb on + strand, within Echvi_0525 at 594.823 kb on + strand, within Echvi_0525 at 594.823 kb on + strand, within Echvi_0525 at 594.823 kb on + strand, within Echvi_0525 at 594.824 kb on - strand, within Echvi_0525 at 594.862 kb on - strand, within Echvi_0525 at 594.893 kb on - strand, within Echvi_0525 at 594.913 kb on + strand, within Echvi_0525 at 594.913 kb on + strand, within Echvi_0525 at 594.913 kb on + strand, within Echvi_0525 at 594.913 kb on + strand, within Echvi_0525 at 594.916 kb on - strand, within Echvi_0525 at 594.918 kb on + strand, within Echvi_0525 at 594.919 kb on - strand, within Echvi_0525 at 594.919 kb on - strand, within Echvi_0525 at 594.984 kb on + strand, within Echvi_0525 at 594.984 kb on + strand, within Echvi_0525 at 594.985 kb on - strand, within Echvi_0525 at 594.986 kb on + strand, within Echvi_0525 at 594.986 kb on + strand, within Echvi_0525 at 594.986 kb on + strand, within Echvi_0525 at 594.986 kb on + strand, within Echvi_0525 at 594.987 kb on - strand, within Echvi_0525 at 594.987 kb on - strand, within Echvi_0525 at 594.987 kb on - strand, within Echvi_0525 at 595.060 kb on + strand, within Echvi_0525 at 595.061 kb on - strand, within Echvi_0525 at 595.073 kb on + strand at 595.073 kb on + strand at 595.073 kb on + strand at 595.074 kb on - strand at 595.086 kb on - strand at 595.110 kb on - strand at 595.113 kb on + strand at 595.114 kb on - strand at 595.114 kb on - strand at 595.114 kb on - strand at 595.140 kb on - strand at 595.142 kb on - strand at 595.175 kb on + strand at 595.176 kb on - strand at 595.176 kb on - strand at 595.179 kb on + strand at 595.183 kb on - strand at 595.183 kb on - strand at 595.183 kb on - strand at 595.183 kb on - strand at 595.185 kb on - strand at 595.227 kb on + strand at 595.227 kb on + strand at 595.231 kb on + strand at 595.231 kb on + strand at 595.232 kb on - strand at 595.233 kb on + strand at 595.233 kb on + strand at 595.233 kb on + strand at 595.234 kb on - strand at 595.235 kb on + strand at 595.235 kb on + strand at 595.239 kb on + strand at 595.239 kb on + strand at 595.245 kb on + strand at 595.254 kb on + strand at 595.254 kb on + strand at 595.255 kb on - strand at 595.255 kb on - strand at 595.259 kb on + strand at 595.259 kb on + strand at 595.263 kb on + strand at 595.263 kb on + strand at 595.276 kb on + strand at 595.276 kb on + strand at 595.285 kb on + strand at 595.285 kb on + strand at 595.286 kb on - strand at 595.373 kb on - strand at 595.376 kb on + strand at 595.376 kb on + strand at 595.376 kb on + strand at 595.376 kb on + strand at 595.376 kb on + strand at 595.377 kb on - strand at 595.377 kb on - strand at 595.377 kb on - strand at 595.393 kb on - strand at 595.431 kb on + strand at 595.468 kb on - strand at 595.474 kb on - strand at 595.480 kb on + strand at 595.484 kb on - strand at 595.484 kb on - strand at 595.520 kb on + strand, within Echvi_0527 at 595.520 kb on + strand, within Echvi_0527 at 595.521 kb on - strand, within Echvi_0527 at 595.561 kb on - strand, within Echvi_0527 at 595.572 kb on + strand, within Echvi_0527 at 595.619 kb on - strand, within Echvi_0527 at 595.619 kb on - strand, within Echvi_0527 at 595.619 kb on - strand, within Echvi_0527 at 595.622 kb on - strand, within Echvi_0527 at 595.622 kb on - strand, within Echvi_0527 at 595.622 kb on - strand, within Echvi_0527 at 595.668 kb on - strand, within Echvi_0527 at 595.668 kb on - strand, within Echvi_0527 at 595.672 kb on - strand, within Echvi_0527 at 595.672 kb on - strand, within Echvi_0527 at 595.675 kb on - strand, within Echvi_0527 at 595.675 kb on - strand, within Echvi_0527
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.06 mg/ml remove 593,557 - Echvi_0524 0.62 +0.1 593,627 + Echvi_0524 0.66 +1.1 593,627 + Echvi_0524 0.66 -0.4 593,696 + Echvi_0524 0.70 -1.3 593,696 + Echvi_0524 0.70 -0.5 593,696 + Echvi_0524 0.70 +0.5 593,696 + Echvi_0524 0.70 +0.5 593,696 + Echvi_0524 0.70 -0.6 593,696 + Echvi_0524 0.70 -0.3 593,696 + Echvi_0524 0.70 -1.1 593,697 - Echvi_0524 0.70 +0.6 593,720 - Echvi_0524 0.71 -1.1 593,778 + Echvi_0524 0.74 +0.4 593,850 - Echvi_0524 0.77 -0.6 593,890 + Echvi_0524 0.79 +0.4 593,890 + Echvi_0524 0.79 -0.1 593,890 + Echvi_0524 0.79 -1.6 593,891 - Echvi_0524 0.79 -0.4 593,891 - Echvi_0524 0.79 +0.5 594,007 + Echvi_0524 0.85 -3.1 594,007 + Echvi_0524 0.85 -0.5 594,069 + Echvi_0524 0.89 +1.3 594,104 + -1.3 594,104 + -0.9 594,126 - -1.1 594,158 + -1.1 594,159 - -2.5 594,180 + -0.4 594,180 + +0.3 594,232 - +1.2 594,254 - -0.7 594,254 - +1.1 594,254 - +1.0 594,283 - +0.3 594,285 - +0.6 594,292 - +0.7 594,305 + +1.0 594,325 - -1.7 594,351 + +0.8 594,367 + -0.4 594,398 + +0.4 594,460 - +0.5 594,465 - -1.1 594,471 + -0.3 594,471 + +0.1 594,589 + Echvi_0525 0.19 +0.9 594,589 + Echvi_0525 0.19 +0.8 594,592 + Echvi_0525 0.20 +1.2 594,593 - Echvi_0525 0.20 +0.5 594,593 - Echvi_0525 0.20 +0.7 594,593 - Echvi_0525 0.20 +0.1 594,607 + Echvi_0525 0.22 +1.0 594,609 + Echvi_0525 0.22 +0.0 594,609 + Echvi_0525 0.22 -0.3 594,610 - Echvi_0525 0.23 +0.5 594,612 + Echvi_0525 0.23 +1.1 594,612 + Echvi_0525 0.23 +0.3 594,612 + Echvi_0525 0.23 +1.2 594,613 - Echvi_0525 0.23 -0.8 594,614 + Echvi_0525 0.23 -0.0 594,614 + Echvi_0525 0.23 -1.4 594,614 + Echvi_0525 0.23 -0.4 594,614 + Echvi_0525 0.23 +0.3 594,614 + Echvi_0525 0.23 +2.1 594,614 + Echvi_0525 0.23 -0.0 594,651 + Echvi_0525 0.29 +0.9 594,651 + Echvi_0525 0.29 -1.4 594,651 + Echvi_0525 0.29 +1.9 594,651 + Echvi_0525 0.29 +0.5 594,658 + Echvi_0525 0.30 -0.2 594,658 + Echvi_0525 0.30 -0.4 594,658 + Echvi_0525 0.30 -2.7 594,659 - Echvi_0525 0.30 -0.8 594,659 - Echvi_0525 0.30 -0.1 594,722 + Echvi_0525 0.39 +0.0 594,780 + Echvi_0525 0.48 +0.5 594,781 - Echvi_0525 0.48 -0.2 594,781 - Echvi_0525 0.48 -0.8 594,801 - Echvi_0525 0.51 -0.1 594,814 - Echvi_0525 0.53 +0.6 594,818 + Echvi_0525 0.53 -0.7 594,823 + Echvi_0525 0.54 +1.1 594,823 + Echvi_0525 0.54 +0.2 594,823 + Echvi_0525 0.54 -0.9 594,824 - Echvi_0525 0.54 +0.3 594,862 - Echvi_0525 0.60 -0.6 594,893 - Echvi_0525 0.64 -0.4 594,913 + Echvi_0525 0.67 -1.4 594,913 + Echvi_0525 0.67 +0.3 594,913 + Echvi_0525 0.67 -0.7 594,913 + Echvi_0525 0.67 +0.3 594,916 - Echvi_0525 0.68 +0.6 594,918 + Echvi_0525 0.68 -0.9 594,919 - Echvi_0525 0.68 -0.3 594,919 - Echvi_0525 0.68 +1.9 594,984 + Echvi_0525 0.78 -0.4 594,984 + Echvi_0525 0.78 +0.4 594,985 - Echvi_0525 0.78 -0.0 594,986 + Echvi_0525 0.78 -0.5 594,986 + Echvi_0525 0.78 +0.1 594,986 + Echvi_0525 0.78 -0.7 594,986 + Echvi_0525 0.78 -0.9 594,987 - Echvi_0525 0.78 -0.2 594,987 - Echvi_0525 0.78 +1.3 594,987 - Echvi_0525 0.78 -0.6 595,060 + Echvi_0525 0.89 +1.4 595,061 - Echvi_0525 0.89 -3.0 595,073 + +0.3 595,073 + +0.1 595,073 + -2.9 595,074 - +1.1 595,086 - +0.5 595,110 - +2.2 595,113 + -0.8 595,114 - -0.3 595,114 - -1.3 595,114 - -0.2 595,140 - -1.0 595,142 - -0.2 595,175 + +0.3 595,176 - -1.1 595,176 - +0.5 595,179 + +0.6 595,183 - -0.8 595,183 - -1.0 595,183 - +0.3 595,183 - +0.6 595,185 - -0.9 595,227 + +1.1 595,227 + -0.3 595,231 + -0.5 595,231 + +1.1 595,232 - +0.1 595,233 + +0.4 595,233 + +0.8 595,233 + -0.2 595,234 - +0.3 595,235 + +0.0 595,235 + -1.1 595,239 + -1.6 595,239 + +1.7 595,245 + +0.3 595,254 + +0.3 595,254 + +1.9 595,255 - +1.1 595,255 - -0.6 595,259 + +1.4 595,259 + +1.7 595,263 + +0.3 595,263 + -1.4 595,276 + -0.6 595,276 + +0.5 595,285 + -0.8 595,285 + +0.5 595,286 - -0.3 595,373 - +0.9 595,376 + -1.9 595,376 + +0.9 595,376 + -0.2 595,376 + +1.3 595,376 + +0.9 595,377 - +0.9 595,377 - -0.7 595,377 - -0.5 595,393 - +0.5 595,431 + -0.6 595,468 - +0.3 595,474 - +0.3 595,480 + -1.5 595,484 - -1.1 595,484 - -0.4 595,520 + Echvi_0527 0.19 +0.4 595,520 + Echvi_0527 0.19 +0.5 595,521 - Echvi_0527 0.20 +0.2 595,561 - Echvi_0527 0.36 -0.9 595,572 + Echvi_0527 0.40 -0.5 595,619 - Echvi_0527 0.59 +0.9 595,619 - Echvi_0527 0.59 +1.9 595,619 - Echvi_0527 0.59 -1.9 595,622 - Echvi_0527 0.60 -0.3 595,622 - Echvi_0527 0.60 -0.3 595,622 - Echvi_0527 0.60 -0.3 595,668 - Echvi_0527 0.79 +0.3 595,668 - Echvi_0527 0.79 +0.1 595,672 - Echvi_0527 0.80 -0.1 595,672 - Echvi_0527 0.80 -2.6 595,675 - Echvi_0527 0.82 -0.3 595,675 - Echvi_0527 0.82 -0.7
Or see this region's nucleotide sequence