Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_0450

Experiment: m.b. Spectinomycin 0.06 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_0449 and Echvi_0450 are separated by 80 nucleotidesEchvi_0450 and Echvi_0451 are separated by 120 nucleotides Echvi_0449: Echvi_0449 - hypothetical protein, at 492,362 to 493,480 _0449 Echvi_0450: Echvi_0450 - hypothetical protein, at 493,561 to 494,091 _0450 Echvi_0451: Echvi_0451 - hypothetical protein, at 494,212 to 495,504 _0451 Position (kb) 493 494 495Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 492.603 kb on - strand, within Echvi_0449at 492.663 kb on + strand, within Echvi_0449at 492.667 kb on + strand, within Echvi_0449at 492.667 kb on + strand, within Echvi_0449at 492.728 kb on + strand, within Echvi_0449at 492.795 kb on + strand, within Echvi_0449at 492.796 kb on - strand, within Echvi_0449at 492.801 kb on + strand, within Echvi_0449at 492.969 kb on + strand, within Echvi_0449at 492.970 kb on - strand, within Echvi_0449at 492.970 kb on - strand, within Echvi_0449at 492.970 kb on - strand, within Echvi_0449at 492.970 kb on - strand, within Echvi_0449at 493.011 kb on + strand, within Echvi_0449at 493.011 kb on + strand, within Echvi_0449at 493.088 kb on + strand, within Echvi_0449at 493.246 kb on + strand, within Echvi_0449at 493.247 kb on - strand, within Echvi_0449at 493.276 kb on + strand, within Echvi_0449at 493.286 kb on - strand, within Echvi_0449at 493.432 kb on + strandat 493.432 kb on + strandat 493.433 kb on - strandat 493.433 kb on - strandat 493.435 kb on + strandat 493.435 kb on + strandat 493.436 kb on - strandat 493.437 kb on + strandat 493.438 kb on - strandat 493.451 kb on + strandat 493.451 kb on + strandat 493.451 kb on + strandat 493.452 kb on - strandat 493.452 kb on - strandat 493.475 kb on + strandat 493.476 kb on - strandat 493.487 kb on + strandat 493.487 kb on + strandat 493.487 kb on + strandat 493.487 kb on + strandat 493.488 kb on - strandat 493.490 kb on + strandat 493.491 kb on - strandat 493.527 kb on - strandat 493.550 kb on + strandat 493.563 kb on - strandat 493.661 kb on - strand, within Echvi_0450at 493.702 kb on - strand, within Echvi_0450at 493.717 kb on + strand, within Echvi_0450at 493.718 kb on - strand, within Echvi_0450at 493.825 kb on - strand, within Echvi_0450at 493.863 kb on + strand, within Echvi_0450at 493.919 kb on + strand, within Echvi_0450at 493.920 kb on - strand, within Echvi_0450at 493.920 kb on - strand, within Echvi_0450at 493.920 kb on - strand, within Echvi_0450at 493.963 kb on + strand, within Echvi_0450at 493.963 kb on + strand, within Echvi_0450at 493.964 kb on - strand, within Echvi_0450at 494.074 kb on + strandat 494.116 kb on + strandat 494.126 kb on + strandat 494.128 kb on + strandat 494.177 kb on - strandat 494.210 kb on + strandat 494.213 kb on + strandat 494.220 kb on + strandat 494.220 kb on + strandat 494.238 kb on - strandat 494.243 kb on - strandat 494.271 kb on + strandat 494.273 kb on + strandat 494.273 kb on + strandat 494.273 kb on + strandat 494.273 kb on + strandat 494.292 kb on + strandat 494.348 kb on + strand, within Echvi_0451at 494.349 kb on - strand, within Echvi_0451at 494.407 kb on - strand, within Echvi_0451at 494.408 kb on + strand, within Echvi_0451at 494.408 kb on + strand, within Echvi_0451at 494.408 kb on + strand, within Echvi_0451at 494.408 kb on + strand, within Echvi_0451at 494.409 kb on - strand, within Echvi_0451at 494.409 kb on - strand, within Echvi_0451at 494.507 kb on + strand, within Echvi_0451at 494.510 kb on + strand, within Echvi_0451at 494.620 kb on + strand, within Echvi_0451at 494.621 kb on - strand, within Echvi_0451at 494.621 kb on - strand, within Echvi_0451at 494.625 kb on - strand, within Echvi_0451at 494.637 kb on + strand, within Echvi_0451at 494.683 kb on - strand, within Echvi_0451at 494.683 kb on - strand, within Echvi_0451at 494.685 kb on + strand, within Echvi_0451at 494.685 kb on + strand, within Echvi_0451at 494.692 kb on + strand, within Echvi_0451at 494.693 kb on - strand, within Echvi_0451at 494.698 kb on - strand, within Echvi_0451at 494.698 kb on - strand, within Echvi_0451at 494.759 kb on + strand, within Echvi_0451at 494.772 kb on + strand, within Echvi_0451at 494.804 kb on + strand, within Echvi_0451at 494.814 kb on + strand, within Echvi_0451at 494.815 kb on - strand, within Echvi_0451at 494.817 kb on + strand, within Echvi_0451at 494.824 kb on + strand, within Echvi_0451at 494.825 kb on - strand, within Echvi_0451at 494.825 kb on - strand, within Echvi_0451at 494.825 kb on - strand, within Echvi_0451at 494.826 kb on + strand, within Echvi_0451at 494.959 kb on + strand, within Echvi_0451at 495.086 kb on - strand, within Echvi_0451at 495.090 kb on + strand, within Echvi_0451

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Spectinomycin 0.06 mg/ml
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492,603 - Echvi_0449 0.22 +0.3
492,663 + Echvi_0449 0.27 -0.3
492,667 + Echvi_0449 0.27 -0.8
492,667 + Echvi_0449 0.27 +0.6
492,728 + Echvi_0449 0.33 +0.6
492,795 + Echvi_0449 0.39 +0.8
492,796 - Echvi_0449 0.39 -0.6
492,801 + Echvi_0449 0.39 +1.1
492,969 + Echvi_0449 0.54 -1.3
492,970 - Echvi_0449 0.54 +0.1
492,970 - Echvi_0449 0.54 +0.5
492,970 - Echvi_0449 0.54 +0.3
492,970 - Echvi_0449 0.54 +0.0
493,011 + Echvi_0449 0.58 +0.2
493,011 + Echvi_0449 0.58 -1.8
493,088 + Echvi_0449 0.65 +0.2
493,246 + Echvi_0449 0.79 -0.4
493,247 - Echvi_0449 0.79 -1.6
493,276 + Echvi_0449 0.82 +0.9
493,286 - Echvi_0449 0.83 -0.2
493,432 + -2.9
493,432 + +0.1
493,433 - -0.7
493,433 - -0.8
493,435 + +1.3
493,435 + -0.9
493,436 - -0.4
493,437 + +0.5
493,438 - -0.4
493,451 + -0.2
493,451 + -1.1
493,451 + -0.4
493,452 - -1.3
493,452 - -1.2
493,475 + +0.1
493,476 - -0.0
493,487 + +0.1
493,487 + +0.5
493,487 + +0.7
493,487 + -0.2
493,488 - -0.4
493,490 + -0.9
493,491 - -0.6
493,527 - -0.2
493,550 + +0.1
493,563 - -0.4
493,661 - Echvi_0450 0.19 +1.9
493,702 - Echvi_0450 0.27 +2.4
493,717 + Echvi_0450 0.29 +0.9
493,718 - Echvi_0450 0.30 +0.8
493,825 - Echvi_0450 0.50 -0.6
493,863 + Echvi_0450 0.57 +0.9
493,919 + Echvi_0450 0.67 +0.1
493,920 - Echvi_0450 0.68 +0.0
493,920 - Echvi_0450 0.68 +0.3
493,920 - Echvi_0450 0.68 -1.7
493,963 + Echvi_0450 0.76 -0.4
493,963 + Echvi_0450 0.76 +1.0
493,964 - Echvi_0450 0.76 -1.4
494,074 + -0.1
494,116 + -0.9
494,126 + -1.1
494,128 + -0.1
494,177 - +0.0
494,210 + +1.6
494,213 + -0.9
494,220 + +0.5
494,220 + +0.0
494,238 - +0.1
494,243 - -1.1
494,271 + -1.3
494,273 + -1.9
494,273 + -0.1
494,273 + +0.1
494,273 + +1.9
494,292 + -1.6
494,348 + Echvi_0451 0.11 -2.0
494,349 - Echvi_0451 0.11 -0.7
494,407 - Echvi_0451 0.15 +0.0
494,408 + Echvi_0451 0.15 +0.9
494,408 + Echvi_0451 0.15 +0.4
494,408 + Echvi_0451 0.15 -1.3
494,408 + Echvi_0451 0.15 -0.4
494,409 - Echvi_0451 0.15 +0.0
494,409 - Echvi_0451 0.15 -0.8
494,507 + Echvi_0451 0.23 -0.3
494,510 + Echvi_0451 0.23 +0.7
494,620 + Echvi_0451 0.32 +0.3
494,621 - Echvi_0451 0.32 -0.9
494,621 - Echvi_0451 0.32 -0.6
494,625 - Echvi_0451 0.32 -0.6
494,637 + Echvi_0451 0.33 -2.2
494,683 - Echvi_0451 0.36 +0.0
494,683 - Echvi_0451 0.36 -1.1
494,685 + Echvi_0451 0.37 -1.2
494,685 + Echvi_0451 0.37 +0.9
494,692 + Echvi_0451 0.37 +1.2
494,693 - Echvi_0451 0.37 -0.4
494,698 - Echvi_0451 0.38 +0.3
494,698 - Echvi_0451 0.38 -0.1
494,759 + Echvi_0451 0.42 +1.0
494,772 + Echvi_0451 0.43 -0.4
494,804 + Echvi_0451 0.46 -0.3
494,814 + Echvi_0451 0.47 +2.9
494,815 - Echvi_0451 0.47 -0.6
494,817 + Echvi_0451 0.47 +0.0
494,824 + Echvi_0451 0.47 -1.4
494,825 - Echvi_0451 0.47 +1.1
494,825 - Echvi_0451 0.47 -0.0
494,825 - Echvi_0451 0.47 -0.1
494,826 + Echvi_0451 0.47 +0.1
494,959 + Echvi_0451 0.58 +0.2
495,086 - Echvi_0451 0.68 -0.0
495,090 + Echvi_0451 0.68 -0.1

Or see this region's nucleotide sequence